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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000006_pilon:1006415..1010303- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_040166 ID=XLOC_040166|Name=XLOC_040166|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3889bp|location=Sequence derived from alignment at sc0000006_pilon:1006415..1010303- (Clytia hemisphaerica_ch_hm2_pilon)
AATGATCATGAAATTTTCTTTAAGCACAACGATATGATGAGTGAACAAGA
CAAAAAACGAAAAGAAGACTTTAAGAAACATGAAATGGATAAAGAACACG
AGCGAAGAGAAAAACAAAAAAATATGAGTGAAGAAGAACGCAAAAAGGAT
GATGAGGAATACAAACAACATCATGAACAAAAACATGAATCAATGCATGA
ACCTGTGAGGATGATTTTAAAATTATATAAAGTTTTAAATGCTTTTCAGT
ATTTCTTTGGATTCTTATAACTAGATAAGTAAATACACTACAAGCCTAAA
GAAATGGTGAAGAAAAAATCATTTATTGTTCAAATGTTTGACTTGACTAA
CATTTCAATGTTTATTCAGCTGATTTGATCATTTTTTTCTTTTTCGTTCT
TTTTCATAGGGACATAAGAAACAATTAGAAGAGGTCTGGGAAAAGGAAGA
TGGTCTAGATCCTGATAGTTTCGATCCACGAACTTTCTTCAATTTACACG
GTAACGACTTTCATTTAAAAAAAACATATCTCAATTTGAAAAGATTAATT
AAAAAAGAACCTTGGAAAGAATCTTTTTAAAGCACTTTTGTCTTTTTCGT
CAATTTCTAAGGAGGTTATATCTTGAATAGATATTTCTTGTATCAGTTTT
TTTTTCATTGAAACTTTTAAACGAGTAATGCAAAATTGTTCTTGGGATAT
TTCAAAATCGGGTTGATATTATTCAATAAACAACTTATATACACGTCTCA
TTTCACACAAGCATGTTCCTTATACATCTTAACTCTTCCTCCTCTTAATA
AATCACTTCCTTATCATAAACTATCATTACCGCCATCCAATCAAGAATTA
TGAAGGAAATCCCACAAAATAACTTTACGCTTTTCAACAATTAGATTATA
ATTATTTCAAATAACAACCTGCTTTCGATAATGTTGATGTAAACAAATAC
AGAACATATTTTAAAAAGGTGATGAAGTAAAATCAACACAAATAACAATT
CATTATATTAAAAAAAATATATTATTCTTTTCTGTCTTAAAGATTGTTTT
CTTAAGTTTTCCTCGATTGCATTTTCTAGACAAAAATGGTGACGGCTATT
TGGACACTTATGAATTGGAAACATTCTTTTTATCTGATGTAAGTAGGGGC
CTAAAAAATTCATTCAGAATAAACCAAACAGATTACCAGTCACCAGAAAT
AGAGTAGTTACAAGTGTAGAACAGCTACTTACCAATTTATGATGACTAAT
TTAAAGAATGAAAAAAAAACTAAACTCTAATCATTAATGAATAAAATGTT
ACCCTAACCTAATAGGCCCTAATATTGAAGTAATCTAATTCAAAATATAA
AATCAAAAACTGCAATCCATCAAAAATTTAAAACTTAAATCCGAAGAAAA
ATCTTTAAAAAATACTGTATCAATCTTAAAGGCATAACCATATGGTTTGA
GATATTTGGCCTGTAGATCCCTCCATGGACCTGTGGAAAACCTTTAATCC
TTTTTCCTTAACTTCATATTATGATTAAGTTTTTTTTACTTTTACAAAGA
ATTGCCTAGATCTCGATTTAAGAAATGACAAATTTTCATACAACTTTGGA
AAAGAATTCGACAAAAAGTCTTTTACTCATCATGAGTATGGAAGGAATCA
TACTGTAGGACATATCTCAAACCATCTGATAATCCCTTTCAAATTAATTA
AGGAAGGCACAGTGCAACTTTGGAAAACTTATTAAAAATTAATTATTAAT
CTAATAACCTTTGAAAGTTTTTAAAAAATCCATCACACAAAACATTGCAT
GCACTAGGTAATCACATCACTCTAATTTCAGACGTTTTCTTACAATGCTG
GGTTGTAAATTAACACTTGACTTATTTACTGACTTGTCTTGCTTACACAG
ACAAAAATAATGACGGACACTTGGACACCTACGAACTTGAAACAATGTTC
TTAAATGACGTGAGTAAATTTTAATCTTAAAAATATTTCTAATTTTAATG
ATATTTCATTTTTTATTAAAAAAAGATAATAATTCTAATTTTGGAGGTGA
CTTATTTATAATGATCTAAAAGTTAGTATCTAAGATTTCCAAAATAGTCT
CTCTCTTGAGAAAACACTCTTAAGCCTCGTTAACATAATGTAATGTCTTT
TATATAATTGTTTATAGTGAATAAAGATTAACTTTTGTTATGTTACTGCG
CTAATCAAGTTGACTTAAATTTTGGTCATTTTACTTTAATATGAAGTATT
CGTTAGTCAAGATAATATTTACAAGCAGTTTTTATTAAGATAGTCTGTAA
ATAACATGATTGCTTCTTCGTAGCTAATATTTTTTCCTATTCGTTTTCTT
TCAGTTGGACAAGGTGTACAATGAATCAGACCCAAATACTGATAAACAAG
AGAGAGAAGAAGAAATGGAAAGAATGAGAGAACACGTCTTGAAAAATGTA
ACCATTTAATTAGCCCTAAAATACATTTGAATTACTATAAATCAGTATTT
CAATCTGTTTCAATAAGACCTTTTTATCGAAGTTGCGTTCTTGCAAGTTC
GACTTGAGCAGACTTGTATCGTGTAGTGGATGTTCATGTTCAAAATCTTT
TCTAAAATCTTAACCCGTTCTGTCCCAGAACTTTTGCACTTAAAAAAAAA
AAATTTACAATCTTCAATGAGCCCAGGAAACCTTATGAATCTTAGCCCGT
CAAAGGTGAAATATCTGGGGACCGCTCACGTGGTCCTTTGACTGAAAGAG
TCAAGTACTGATGTTGTTTTATTTTGGGATATCAAATTATTCATGGTCTC
CCAGTTTCTAGATATTACAGAGTGACTTAAATAAAAGCAACCCTCTTGGT
TTCATCTTGGTTTATTTCCATACACTAAGGAGTATATTATACTAATGTAT
TTTCTTTCCAATCTGTCAGATGGACACGGATAAGGATGGATTAGTTTCAT
ACGACGAGTTCATTGCGGAAACAAAAGACACAGATTTCGATAAAGATGAA
GAATGGAAACCTTTGACTGAAGAAGAACAATTTAGCGATGAAGAATATAA
AGAATACGAACGATTGTTATCGGAACAAGAAGGACATGTAAGTAAAAGAT
CTTGACATTTTAAGTAGCGCGACTGTTACTACTGGTGCTCGGGGGGATTA
GGTTTATGAGGTGACGGGTATGTTGTTCGAGTCAAAGATTTGAGAGACTG
TATTTCGAAAATTTTGCCCTCTGAGGGACTATTTTTCCCAATTTTCAAAC
AATCAAAAATTTCAAATTTAATCCAAATTACGAGAATTTATTATCGTAAT
TTTAGGACCTTTAAAAAGACTCCATTGCTAATTTGCGGTTTTTGTACCCC
TGTGAGAAACTTCCGAGGATGTAAAAAGGAACCCTTATAGCTTGCACGTA
CCCGATACTCATTAGCGAGATTATGTATCTGGAATTCTCTACGGCTACGG
CTAAAGTGGCGAGGGAAATGGCGAGTAAGGCAAGTAATGGCGGGTGAAAG
TTCGATATTTGACGTACGGCATTATGTCGACTTTGCTTATACGGTGTTTT
GGTGTTTTTCCCGTACGGAGCAAAGTAGACAACGACATGTCGCCTTTGTT
GACGACCCTTTCAGGCAGCCCCGCAACCGTAGCCGTAGAATATCTCCGAT
ACATAATCTCGCAATTTTGCCCGAGTACCAGCCCCTCGGTCTAGTGCTGC
TGATGCCCATAAGTTCAACCAAATAAGAGATTCTGGTCAGTGTTCAGTTT
ATCGCTTAATAAGGCGTGGTCCATTTAAACAGTTTGTCGCAAATCTTTTC
ATTCTAACCTCTTTTAATTCTTTCTTTTACTCCAGCACGAAGACGAAAAT
CACGTGGAAGGAGGTGCACAGGCTGAAGTTCATCACTAG Coding sequence (CDS) from alignment at sc0000006_pilon:1006415..1010303- >XLOC_040166 ID=XLOC_040166|Name=XLOC_040166|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1338bp|location=Sequence derived from alignment at sc0000006_pilon:1006415..1010303- (Clytia hemisphaerica_ch_hm2_pilon)
AATGATCATGAAATTTTCTTTAAGCACAACGATATGATGAGTGAACAAGA
CAAAAAACGAAAAGAAGACTTTAAGAAACATGAAATGGATAAAGAACACG
AGCGAAGAGAAAAACAAAAAAATATGAGTGAAGAAGAACGCAAAAAGGAT
GATGAGGAATACAAACAACATCATGAACAAAAACATGAATCAATGCATGA
ACCTAATGATCATGAAATTTTCTTTAAGCACAACGATATGATGAGTGAAC
AAGACAAAAAACGAAAAGAAGACTTTAAGAAACATGAAATGGATAAAGAA
CACGAGCGAAGAGAAAAACAAAAAAATATGAGTGAAGAAGAACGCAAAAA
GGATGATGAGGAATACAAACAACATCATGAACAAAAACATGAATCAATGC
ATGAACCTGGACATAAGAAACAATTAGAAGAGGTCTGGGAAAAGGAAGAT
GGTCTAGATCCTGATAGTTTCGATCCACGAACTTTCTTCAATTTACACGG
GACATAAGAAACAATTAGAAGAGGTCTGGGAAAAGGAAGATGGTCTAGAT
CCTGATAGTTTCGATCCACGAACTTTCTTCAATTTACACGACAAAAATGG
TGACGGCTATTTGGACACTTATGAATTGGAAACATTCTTTTTATCTGATA
CAAAAATGGTGACGGCTATTTGGACACTTATGAATTGGAAACATTCTTTT
TATCTGATTTGGACAAGGTGTACAATGAATCAGACCCAAATACTGATAAA
CAAGAGAGAGAAGAAGAAATGGAAAGAATGAGAGAACACGTCTTGAAAAA
TTTGGACAAGGTGTACAATGAATCAGACCCAAATACTGATAAACAAGAGA
GAGAAGAAGAAATGGAAAGAATGAGAGAACACGTCTTGAAAAATATGGAC
ACGGATAAGGATGGATTAGTTTCATACGACGAGTTCATTGCGGAAACAAA
AGACACAGATTTCGATAAAGATGAAGAATGGAAACCTTTGACTGAAGAAG
AACAATTTAGCGATGAAGAATATAAAGAATACGAACGATTGTTATCGGAA
CAAGAAGGACATATGGACACGGATAAGGATGGATTAGTTTCATACGACGA
GTTCATTGCGGAAACAAAAGACACAGATTTCGATAAAGATGAAGAATGGA
AACCTTTGACTGAAGAAGAACAATTTAGCGATGAAGAATATAAAGAATAC
GAACGATTGTTATCGGAACAAGAAGGACATCACGAAGACGAAAATCACGT
GGAAGGAGGTGCACAGGCTGAAGTTCATCACTAGCACGAAGACGAAAATC
ACGTGGAAGGAGGTGCACAGGCTGAAGTTCATCACTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000006_pilon | genome | sc0000006_pilon:1006415..1010303 - |
Properties
| Property Name | Value |
|---|
| Aaloc | 616-669:55 |
| Aaloc | 448-615:971 |
| Aaloc | 355-447:1536 |
| Aaloc | 298-354:2809 |
| Aaloc | 205-294:3481 |
| Aaloc | 1-204:3890 |
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