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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000006_pilon:926126..929614+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_040146 ID=XLOC_040146|Name=XLOC_040146|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3489bp|location=Sequence derived from alignment at sc0000006_pilon:926126..929614+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAACAAATGGAACAGATCACAAAGTCCAAGTGCTATACCACGTTTATT
ACAAAAAAGGCCTTTGTTTGGTTCTGCAGATAGTATTCCACGCACTCCTT
CACCCGTTAAAACTAAACCTGGAAGCAAACTGCCCACTCCTActataaga
aaaacaaactcAACACCAAATCTGAAGAGAGGAGAAATTTTGAGTGATAG
TGCTTCATCAAACAAGGAAACATTTCAGATCAAGAGTGTATCTATAGATG
ATTCAAGGAATAACTCTATTTCCACAGAACCTTTCGAAGAGCTTCTTATG
CCTAGCTCTCACAAGTTGATTCATGATTCAGATTCAGATGATGACAAAAG
AGAGTCTTTTTTATCTGGTGGACATGGTGAAGACAACTGGTTGCTTTCAG
ATGGTGGGAATAAGATACAACCTCTTTTGGAAATGGATGTTTTAGTGGAA
GAATCAGATTTTGAGGATGATGATTTACCTGAGGATGCTGAAACTGGTGT
AAATAGAATTGAAAATGGTGCTTGTTCTTCCAATAGAGACTTTGTAATTC
ATCAAAATGTTGCTGGACCATTAAAAAATCATGATGTGGCTACTATAGAA
ATTCAACATAATCGTGCCCAAATTGAGTCATGCCTTGATGACCAAGAACC
CTGTAAGCAATCTTCACCTTTAGTATCAATAACATGGTAATAATGGCTCT
TTTCAGGTCTTTTATTTTGTAATTGTCCGCCTGGTTTCTCAAAGTTTCAG
TCAAGTTGGTCCTTACAGACAAGTTGCTTTGGTCCTTAGTTTTCCTGATG
TCAAACAGCTACATTACATATATATATGTAAAAGAGTTAATGTTACAGTA
CTGACAACTTTTTCGACCTGTTTTCtaattttatcttttattttacaGTG
TCTCGAGAAACTGCTGTCCCTACAGAAAGTGGCTTTCTTCAACAAGCTAC
AAAAGAAAATGTAATGTACATCACTGAAAATCTCATTAAGCGTATCACAA
AAGTCGCTgatttaaattcaatcaaaaaactAAATCTATGTGTTGCAAAA
CAGTGGAAAAGGAAAATTCaggtatttcttgattttttggtaattatttt
ttaagaaaactaacattttaaatcatcttttttcgtttttcatgtAATTA
ATACATGAACCATTAGTTTGACTTGAATGGTCATTacttatttaaatttt
tgaaattttgtcattttttgattaataattttgTCTTCTACTGCAGTTTA
TAGAAAATTTGGAACCATTGAGGAACttagaaatgttgaaattatCCAAT
AACTTCAtcactaaaattcaaaaactcaaCACACTGGTCAATTTGCGCTA
CCTGGATCTATCAATGAATCAAATCACAAATGTTGAAGGATTGGAAACAC
TTGTGAATTTGGAATCTCTGTATCTTGATTATAATCATATTGAATCTTTC
CCTAATTGGTTTGGCAAGAAAATGAGGAGCTTGCAAACTTTTTCAATCTC
AAATAATAGATTCACAAAGGTATATTATCATACAGCATCTGGATTATAAA
TGAATAGTGCTCTTTTCACAACCTACGTTACCGACCGCTACTACAAACTA
TGTATTGAACATAAATAATTTCCTTTCTTttctcaaaacaaacaaacaaa
caaacttttaaacaatatttctattttccacattttagtTGGATGAATTT
GTGAAGCTAGCATCCTTGTCTAACTTGAGTCTTCTTGATATTCGGGACAA
CCCATGCTGTCGCCTGAACCACTTGGAAAGTTTTGTTGTTTTCCACTTGC
GATCATTGAATACAATAAATGGAAAAGTCATTTGCATTGAAATGAGGAAT
ATGGCTGATCAGCGATTCTCTAAAGGTGAAATAATGGAAAACTTTAGCCA
ATATTGCTTAATCTTAAAATGAAGTAAACTAGATTCAATAACCTCAAGAA
TTAATTAATAACATAACATCCTTTCAAGGTTCTGTTCGATTTTTCCTTGG
AGATCCTATTTTCATCATACTCTATCTTTTTTGTATCCTTAGATGAAATT
GATTGCCGTGAGAAACAAATCAATGAACTTCAAAAGCAAAATACAGCATT
actaaaagaaaatagaaagcTAACTGAAAGTCAAAACCAAACCGGTAATA
TTGAGAAAAAGCTTATTGATAAAGTTAAAACTTTGAAGAAATCTCTGCAC
ACTTGTACTCAAGACTTGGAGACCAAAAATGGACTGGTACGTGAAAAAGT
TTTAAACTTGCCCAAAATCTCAGGAAATTGCATTGAACTTTTACCCCTTT
AATCAcataaattcaaaaagtcaaaacattgtTTTGTATGGTTTGAATGA
AGATAATTTGAATGGAGGTAATTTGAATGAAGTAGTTACAATCTTTCCTC
AAAAGTGCTTTTTCTCAAATCTCAATTTCAGCTGGAAAGTAAAACAACGG
AGTTGAACAAAGCATGTGAAAAGCAATACAAATTGGAACAAGAGCTAGCT
TTTTACAAATTGGACGCAAAATTTGATGAGATGTGGCAAATGCCTCCTAG
AGAAGGCAATGAAATGGTAAGTAAAAAGGTCaactctaaaaatgtttttt
cctggCCCATTGGGTGACaaaaaaaGTCATGCGGGCAGCCGGGATAACTT
TATTTCCAGTCCTTTTCATGATCTTTTTAAAAcatgaaagaaaatgaaaa
cacaaaggagaatattataaagaaatacaagtaagtttccaaaaaaggaa
aaaacaatcGTTAAAATTCCAATTCATGTACTGTaaacatcattttttta
aacaatttgttaacattttcagattagaaattttcatttcaatgttttta
aactgATAATGGTGGTCGGATGACACCGAAAcgtttttaataaatttttg
tctttatgaaaataaaatgaagtcgcttctgtgtttgaaatttttattga
aatcatTCAGGAGGAGCAACCAATTTGAAAACATCATTGTAAACGCATTA
ACATTTTGCAgaaaatattaaatgggaaaattggaaaaaaagaaaagttt
taaaaaattggacTTGGTGCTTATGAAGAAGGTTTTTACCCAGCAGAAAA
GATTTTCACCAGGCTGGTAGAcggaaaaagaaatatttttaggtttcagC
CAATTTACAAACTTTATAGTTCTTACTACAAATCAATTCAGAGTAttctt
ttgccatttttttgtaaaaaaacttttaattccAACTGCTTTATCACCAA
CAAGCAATCAacacaaactttttaatttttttttgcaggaGACTGAAGAG
TTCAACGAACACGCTTACATTGGGAAAGCCAGATACAAGAAAGCCAGCTT
ACCCAAAGACAACATCATCTTGAATGAAGAGCAAAGCATGAGATTCTCAT
CTTTTCTTTCTCGTCTCAATCCAACACAATTtcgagaaaatgaaaatatt
tgcaCAGCTCTAGAGCAAGCCTTGGATATTGATCTCAGT Coding sequence (CDS) from alignment at sc0000006_pilon:926126..929614+ >XLOC_040146 ID=XLOC_040146|Name=XLOC_040146|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3630bp|location=Sequence derived from alignment at sc0000006_pilon:926126..929614+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAACAAATGGAACAGATCACAAAGTCCAAGTGCTATACCACGTTTATT
ACAAAAAAGGCCTTTGTTTGGTTCTGCAGATAGTATTCCACGCACTCCTT
CACCCGTTAAAACTAAACCTGGAAGCAAACTGCCCACTCCTActataaga
aaaacaaactcAACACCAAATCTGAAGAGAGGAGAAATTTTGAGTGATAG
TGCTTCATCAAACAAGGAAACATTTCAGATCAAGAGTGTATCTATAGATG
ATTCAAGGAATAACTCTATTTCCACAGAACCTTTCGAAGAGCTTCTTATG
CCTAGCTCTCACAAGTTGATTCATGATTCAGATTCAGATGATGACAAAAG
AGAGTCTTTTTTATCTGGTGGACATGGTGAAGACAACTGGTTGCTTTCAG
ATGGTGGGAATAAGATACAACCTCTTTTGGAAATGGATGTTTTAGTGGAA
GAATCAGATTTTGAGGATGATGATTTACCTGAGGATGCTGAAACTGGTGT
AAATAGAATTGAAAATGGTGCTTGTTCTTCCAATAGAGACTTTGTAATTC
ATCAAAATGTTGCTGGACCATTAAAAAATCATGATGTGGCTACTATAGAA
ATTCAACATAATCGTGCCCAAATTGAGTCATGCCTTGATGACCAAGAACC
CTATGAACAAATGGAACAGATCACAAAGTCCAAGTGCTATACCACGTTTA
TTACAAAAAAGGCCTTTGTTTGGTTCTGCAGATAGTATTCCACGCACTCC
TTCACCCGTTAAAACTAAACCTGGAAGCAAACTGCCCACTCCTActataa
gaaaaacaaactcAACACCAAATCTGAAGAGAGGAGAAATTTTGAGTGAT
AGTGCTTCATCAAACAAGGAAACATTTCAGATCAAGAGTGTATCTATAGA
TGATTCAAGGAATAACTCTATTTCCACAGAACCTTTCGAAGAGCTTCTTA
TGCCTAGCTCTCACAAGTTGATTCATGATTCAGATTCAGATGATGACAAA
AGAGAGTCTTTTTTATCTGGTGGACATGGTGAAGACAACTGGTTGCTTTC
AGATGGTGGGAATAAGATACAACCTCTTTTGGAAATGGATGTTTTAGTGG
AAGAATCAGATTTTGAGGATGATGATTTACCTGAGGATGCTGAAACTGGT
GTAAATAGAATTGAAAATGGTGCTTGTTCTTCCAATAGAGACTTTGTAAT
TCATCAAAATGTTGCTGGACCATTAAAAAATCATGATGTGGCTACTATAG
AAATTCAACATAATCGTGCCCAAATTGAGTCATGCCTTGATGACCAAGAA
CCCTTGTCTCGAGAAACTGCTGTCCCTACAGAAAGTGGCTTTCTTCAACA
AGCTACAAAAGAAAATGTAATGTACATCACTGAAAATCTCATTAAGCGTA
TCACAAAAGTCGCTgatttaaattcaatcaaaaaactAAATCTATGTGTT
GCAAAACAGTGGAAAAGGAAAATTCagTGTCTCGAGAAACTGCTGTCCCT
ACAGAAAGTGGCTTTCTTCAACAAGCTACAAAAGAAAATGTAATGTACAT
CACTGAAAATCTCATTAAGCGTATCACAAAAGTCGCTgatttaaattcaa
tcaaaaaactAAATCTATGTGTTGCAAAACAGTGGAAAAGGAAAATTCag
TTTATAGAAAATTTGGAACCATTGAGGAACttagaaatgttgaaattatC
CAATAACTTCAtcactaaaattcaaaaactcaaCACACTGGTCAATTTGC
GCTACCTGGATCTATCAATGAATCAAATCACAAATGTTGAAGGATTGGAA
ACACTTGTGAATTTGGAATCTCTGTATCTTGATTATAATCATATTGAATC
TTTCCCTAATTGGTTTGGCAAGAAAATGAGGAGCTTGCAAACTTTTTCAA
TCTCAAATAATAGATTCACAAAGTTTATAGAAAATTTGGAACCATTGAGG
AACttagaaatgttgaaattatCCAATAACTTCAtcactaaaattcaaaa
actcaaCACACTGGTCAATTTGCGCTACCTGGATCTATCAATGAATCAAA
TCACAAATGTTGAAGGATTGGAAACACTTGTGAATTTGGAATCTCTGTAT
CTTGATTATAATCATATTGAATCTTTCCCTAATTGGTTTGGCAAGAAAAT
GAGGAGCTTGCAAACTTTTTCAATCTCAAATAATAGATTCACAAAGtTGG
ATGAATTTGTGAAGCTAGCATCCTTGTCTAACTTGAGTCTTCTTGATATT
CGGGACAACCCATGCTGTCGCCTGAACCACTTGGAAAGTTTTGTTGTTTT
CCACTTGCGATCATTGAATACAATAAATGGAAAAGTCATTTGCATTGAAA
TGAGGAATATGGCTGATCAGCGATTCTCTAAAGtTGGATGAATTTGTGAA
GCTAGCATCCTTGTCTAACTTGAGTCTTCTTGATATTCGGGACAACCCAT
GCTGTCGCCTGAACCACTTGGAAAGTTTTGTTGTTTTCCACTTGCGATCA
TTGAATACAATAAATGGAAAAGTCATTTGCATTGAAATGAGGAATATGGC
TGATCAGCGATTCTCTAAAGATGAAATTGATTGCCGTGAGAAACAAATCA
ATGAACTTCAAAAGCAAAATACAGCATTactaaaagaaaatagaaagcTA
ACTGAAAGTCAAAACCAAACCGGTAATATTGAGAAAAAGCTTATTGATAA
AGTTAAAACTTTGAAGAAATCTCTGCACACTTGTACTCAAGACTTGGAGA
CCAAAAATGGACTGATGAAATTGATTGCCGTGAGAAACAAATCAATGAAC
TTCAAAAGCAAAATACAGCATTactaaaagaaaatagaaagcTAACTGAA
AGTCAAAACCAAACCGGTAATATTGAGAAAAAGCTTATTGATAAAGTTAA
AACTTTGAAGAAATCTCTGCACACTTGTACTCAAGACTTGGAGACCAAAA
ATGGACTGCTGGAAAGTAAAACAACGGAGTTGAACAAAGCATGTGAAAAG
CAATACAAATTGGAACAAGAGCTAGCTTTTTACAAATTGGACGCAAAATT
TGATGAGATGTGGCAAATGCCTCCTAGAGAAGGCAATGAAATGCTGGAAA
GTAAAACAACGGAGTTGAACAAAGCATGTGAAAAGCAATACAAATTGGAA
CAAGAGCTAGCTTTTTACAAATTGGACGCAAAATTTGATGAGATGTGGCA
AATGCCTCCTAGAGAAGGCAATGAAATGgaGACTGAAGAGTTCAACGAAC
ACGCTTACATTGGGAAAGCCAGATACAAGAAAGCCAGCTTACCCAAAGAC
AACATCATCTTGAATGAAGAGCAAAGCATGAGATTCTCATCTTTTCTTTC
TCGTCTCAATCCAACACAATTtcgagaaaatgaaaatatttgcaCAGCTC
TAGAGCAAGCCTTGGATATTGATCTCAGTgaGACTGAAGAGTTCAACGAA
CACGCTTACATTGGGAAAGCCAGATACAAGAAAGCCAGCTTACCCAAAGA
CAACATCATCTTGAATGAAGAGCAAAGCATGAGATTCTCATCTTTTCTTT
CTCGTCTCAATCCAACACAATTtcgagaaaatgaaaatatttgcaCAGCT
CTAGAGCAAGCCTTGGATATTGATCTCAGT
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000006_pilon | genome | sc0000006_pilon:926126..929614 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1615-1815:3289 |
| Aaloc | 1480-1614:2432 |
| Aaloc | 1288-1479:2045 |
| Aaloc | 1099-1284:1689 |
| Aaloc | 826-1098:1247 |
| Aaloc | 655-825:901 |
| Aaloc | 1-651:1 |
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