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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000290_pilon:138845..140803+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_040050 ID=XLOC_040050|Name=XLOC_040050|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1959bp|location=Sequence derived from alignment at sc0000290_pilon:138845..140803+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTATCTTCGAAGCATTGCAATATTTTTGGTCGTTTATTGGTTTGAGAC
ACACGGTAAATTCAACTTATTGTGAAATTgactgaaaaatatgaaaaatc
gaaataaatccTATATAAATTTCGAAAGTTTATTGAACTTTTATCTATCA
ATCCTTCTTTTGATTCTAGAAATAAAGCTAAGATACTTAGAAAGCAATAG
CACAACGTAGAAAAAACAGGTCGAATTTAATCTAAATAGTAGTACACTTC
AAAACggtttttcttcttattttaactcaggatttaaaagattAGAAAGA
TGTTATGATCCCAAACAACGTTGGCGCTGTAAAATCAGAGTGAAGttcta
taaaaacttttgcAGTGATGAACTAAGAAAGCAAACATGTATCAAAAGTT
GCGGTGGTTGTAAAATAGGACCAGTCACACCCAAACGAAAATGTGGCATT
TCAAATGCTTTTCAAGGGCGTGTTGTGAATGGTGAAAACGCCCCTGAAGG
AGCTTACCCTTGGATAGGTTCGCTTCAATTTCGTAAGCCTGGAACCAAga
aacacatttgtggagccaCTCTTATTTATCCAAGATgggtaaataaataa
atacatgTTAAGACAATTCGTTTAATTCGAAAGTAAAGGAAAAATGCCCG
ATTAAATCCTCTTAATTAAGCTATCACAGCATAGGAAAAACTACATTGAG
CTCTCATCCCCACTAGGAAAGCactaaaattttgtgaatcCTGCTCTGTT
TTGACCAGGTAACTTAATTTTTATGTATGTGTTTTCTGCCACGTAGATGA
TTAGCTTTTGAATCTTCTAGATCCTGATGAACTGAGGTAGACTGTAAACC
AGCACTTTTACCGTGTTCCATTGGGTCAGAATTGCAGAATaatccaaatc
gcttcagttacTCCACCGTCCTCGAAAGAGCAAATATCACTTATTGGTCA
CTGAGATATAGGTCTGTTAGGAGGGTAATCCGTTATAATATCAACCTTTT
TCAGGTTTTGTCAGCTGCACATTGTTTTTCGTTCGAAAAAGCCAATATTG
ATGATGTTCTACCATTACTTCGTGTCGAGTTTGGAATCCAtaaccaaaac
aaaacagagcCTTCGTCTCAAGTCAGAAGAATATCAATGCTTATTCAAAG
CCCTGATCTTCAAGTTATCCCAGAGCAAAACACAATATATGGTgatttaa
ttttaattgaaCTTGAAAAGACAGTGATGTTGAATGATCGAGTAAATATA
CCATGCTTGCCAGACAAAGAAGACTACCCAACCATTGGACAGAACTGTGT
TGTAGCAGGTTAGGCAAACTTCATATGACttcgtttttaatttttccttt
ttggcTGAGCAACCTTATAGCATCTTTCTGCATCTTCTACAGCCAATAGG
CTAGAAAATGGACCAATCGTATAACCAACAACTGTTGCTAAGATGGTAAA
TTTGTATAACCTATTATTCAAGTCTTATTCAAATCGAATCTTTCTGCAAA
TGAAAATACTTCGAGAAAACTACCTCGTTTAAGAGAATCTCAGAGAACTA
AACGTCAATCTTTCAATGACAAGTTTCAACAACCATTCTGAAAGTGTAAG
AACTTCTTTATTGACTTCAAACAGGTTGGGGGAGTATAAAATGGCCAAGT
GAAAAGACAGGAGGCATTCTTCAACAAGCTCGGTTACCGGTTGTTGGGCC
AAATCATATCGGTTGCCGTAACAACACTGAAGTCATTTGTGTTGGATACG
GTTTTGGAACTCAACTTAGTGGAAAACACCATCCAAATGCATGCAAAGGA
GATTCTGGCGGCCCACTTGTTTGTCAGAAACAAAGTGGGAATTGGGAATT
TGTTGGTGTAGCAAGTTATGTTCATACTTTGTGCAAGTATTACACAGCTT
ATGCTCCCGTTGGAAAATACATGTCCTGGATCAGTAGCTATGTGCCGGCA
CATTTTTAA Coding sequence (CDS) from alignment at sc0000290_pilon:138845..140803+ >XLOC_040050 ID=XLOC_040050|Name=XLOC_040050|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2004bp|location=Sequence derived from alignment at sc0000290_pilon:138845..140803+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTATCTTCGAAGCATTGCAATATTTTTGGTCGTTTATTGGTTTGAGAC
ACACGATGTATCTTCGAAGCATTGCAATATTTTTGGTCGTTTATTGGTTT
GAGACACACGgatttaaaagattAGAAAGATGTTATGATCCCAAACAACG
TTGGCGCTGTAAAATCAGAGTGAAGttctataaaaacttttgcAGTGATG
AACTAAGAAAGCAAACATGTATCAAAAGTTGCGGTGGTTGTAAAATAGGA
CCAGTCACACCCAAACGAAAATGTGGCATTTCAAATGCTTTTCAAGGGCG
TGTTGTGAATGGTGAAAACGCCCCTGAAGGAGCTTACCCTTGGATAGGTT
CGCTTCAATTTCGTAAGCCTGGAACCAAgaaacacatttgtggagccaCT
CTTATTTATCCAAGATgggatttaaaagattAGAAAGATGTTATGATCCC
AAACAACGTTGGCGCTGTAAAATCAGAGTGAAGttctataaaaacttttg
cAGTGATGAACTAAGAAAGCAAACATGTATCAAAAGTTGCGGTGGTTGTA
AAATAGGACCAGTCACACCCAAACGAAAATGTGGCATTTCAAATGCTTTT
CAAGGGCGTGTTGTGAATGGTGAAAACGCCCCTGAAGGAGCTTACCCTTG
GATAGGTTCGCTTCAATTTCGTAAGCCTGGAACCAAgaaacacatttgtg
gagccaCTCTTATTTATCCAAGATggGTTTTGTCAGCTGCACATTGTTTT
TCGTTCGAAAAAGCCAATATTGATGATGTTCTACCATTACTTCGTGTCGA
GTTTGGAATCCAtaaccaaaacaaaacagagcCTTCGTCTCAAGTCAGAA
GAATATCAATGCTTATTCAAAGCCCTGATCTTCAAGTTATCCCAGAGCAA
AACACAATATATGGTgatttaattttaattgaaCTTGAAAAGACAGTGAT
GTTGAATGATCGAGTAAATATACCATGCTTGCCAGACAAAGAAGACTACC
CAACCATTGGACAGAACTGTGTTGTAGCAGGTTTTGTCAGCTGCACATTG
TTTTTCGTTCGAAAAAGCCAATATTGATGATGTTCTACCATTACTTCGTG
TCGAGTTTGGAATCCAtaaccaaaacaaaacagagcCTTCGTCTCAAGTC
AGAAGAATATCAATGCTTATTCAAAGCCCTGATCTTCAAGTTATCCCAGA
GCAAAACACAATATATGGTgatttaattttaattgaaCTTGAAAAGACAG
TGATGTTGAATGATCGAGTAAATATACCATGCTTGCCAGACAAAGAAGAC
TACCCAACCATTGGACAGAACTGTGTTGTAGCAGGTTGGGGGAGTATAAA
ATGGCCAAGTGAAAAGACAGGAGGCATTCTTCAACAAGCTCGGTTACCGG
TTGTTGGGCCAAATCATATCGGTTGCCGTAACAACACTGAAGTCATTTGT
GTTGGATACGGTTTTGGAACTCAACTTAGTGGAAAACACCATCCAAATGC
ATGCAAAGGAGATTCTGGCGGCCCACTTGTTTGTCAGAAACAAAGTGGGA
ATTGGGAATTTGTTGGTGTAGCAAGTTATGTTCATACTTTGTGCAAGTAT
TACACAGCTTATGCTCCCGTTGGAAAATACATGTCCTGGATCAGTAGCTA
TGTGCCGGCACATTTTTAAGTTGGGGGAGTATAAAATGGCCAAGTGAAAA
GACAGGAGGCATTCTTCAACAAGCTCGGTTACCGGTTGTTGGGCCAAATC
ATATCGGTTGCCGTAACAACACTGAAGTCATTTGTGTTGGATACGGTTTT
GGAACTCAACTTAGTGGAAAACACCATCCAAATGCATGCAAAGGAGATTC
TGGCGGCCCACTTGTTTGTCAGAAACAAAGTGGGAATTGGGAATTTGTTG
GTGTAGCAAGTTATGTTCATACTTTGTGCAAGTATTACACAGCTTATGCT
CCCGTTGGAAAATACATGTCCTGGATCAGTAGCTATGTGCCGGCACATTT
TTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000290_pilon | genome | sc0000290_pilon:138845..140803 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 670-1002:1627 |
| Aaloc | 364-666:1005 |
| Aaloc | 58-363:283 |
| Aaloc | 1-54:1 |
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