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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000152_pilon:730549..734579+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_040042 ID=XLOC_040042|Name=XLOC_040042|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4031bp|location=Sequence derived from alignment at sc0000152_pilon:730549..734579+ (Clytia hemisphaerica_ch_hm2_pilon)
ATggaattaattcaaaatttggtgttaaatAGAGAAGGAAAAAAGGTAAG
ACAATCCatatcatttttttgtaaaagaaaatcGACTCTATATTGAAATC
TCATTGAGAAGTATTATTAGTAGTAACTAGAAAATTCACAAagattttat
tgtattttgaatGGGTTCACTTTCACATTATGGTTGTCTTTATTTCTAGT
GGAAACAACGATGGGCATGTTTAAAGCGGGCATCACCTAAAAACTCTCAA
GCTACAAATGaaggtttttttcttattttctcacaaatttttatgtataa
cattttttcaaatttcactcACCCGAAATTGAGCTGACAAAATCATTTGT
TAGGAAAATTTTATGGAATGTAATTTCTAGGCTGGTATCATTTTTGATCC
CAGGACTAACTTTTTTGCTCACTGAGGAACTTTTAATTTGACGTCTTACA
ACTGAAACCTAGAAAAAATTGCttaagcaaaaaaaagattGCTTCTAATA
GTTCAGACAATCAAGATTAATCAAGATGAAAATAATTGCATCAGAgtttc
ctttttatttgaagataaaactatTTTGGTTTCAACCTGCTACGTCATAC
TTTGTCaatataatttttctttgttaagaattattcaaaatgttttttct
ttcagataATTTCCTTTACGATTTGTACGTGTTTCTTTATAAAAGTGAAG
AACATGCCCATGAAGGGAAAAACGCAAAACTTGTCATCCCCCTGACTGAC
TTTTGCGGTGTAGAGGCACGCAAAGACTACGACAAATCAAATAATGTTTT
GGTGTTGATAACCACTTCACAAACCTCTTTCTTATCCTTTGATAATGCTC
TGTTACGTGATCAATGGATGCGAGCATTAGAAGACCAATTTGGTAAAGGT
TAGTTAAAAGtcagtttttatttctttacacAAGAAAAATGGGACATCTT
TAATACAACACAACCAAATCTGGTCCATTTCTGGTTTTTTGCTAAGGCCT
AGGGAAATTTTCTAGGACtcaaaaactgacgtcacaagcaaagcCCCCTT
GACccctaaaatttgacaaaattcaaTATAACCAAAAACCACTTATACCT
AttgaaagctctcaaaaaatgataaagagGACTTTTTAGTGGATCAGAGT
GGATATAGTCGATTTCTCAACCTTTCacaagaaaattgatttcaaaatta
cgTTTTGACGTGACTTCCAGTCGATTTACTTGCCTTACGTTAAGAAATCG
TATGGCTTCACTTAAAAGTCCTCTGTATCATTTTTTGAGAGCATTTTGTC
AAATGCCTTAGCaaaaaaaCCACTCACGAAAAACTCGTGACATCTAAATA
CTGtacttcattttttgaaatggaTCAGATTTGGTTGCGTTGCATAAAAG
ATGTAACAGGTACTAAGGGTTTGCCCCCTTACTAATATTGTTGTTGAACA
CCATTTTAAAAAGTGCAATCATCGTACAAAAATATTATGATTGCCGCCGT
AAGGCATGAAACTTGAAGTAATGTAATCTTtttggcttcaaaattttgaa
ataaatttatcaatcatCTATTATATCGTCATTTTCTTGCTTTGTAGTTA
CTGCTTTCAACATAAACATACCAGacaaacagaagaaaaagaatgcAGAA
TCAACAATAAGGATTTACAGAAACTTCTTTTCAATTAcaaataaaaatct
taaatgTATAAACAGATGGTATACCAAGGACATAAAAAGCTTCTCTAGAG
GGGAGGACTCACAGTTCATGTTCGAAATCTGTCCTGAACATAAGACTAAA
GGACTCCTTGTAAATATTGTGACTCCAAATGCCAATGAACTTCTCGGAGC
TTTTGAAGAAATCAAAGCTGACCAGGATGAGCCAGGTATCACATTTTTCC
TAAAATATGGTTGGGACTCCTGTCCCTGGACAACAATGACTCGTTTTCAA
TTCATTATTTACTACTTATAACATGAGGGGTATAAGATTTGAGTTCTGTG
ACATGTTttattgaaatgattttaagccaaaaaaattttgtttgaaaaac
atttgtttAGTTTTCTATGAATGAAAATATCATTAAATCCATTTGTTTCT
ACTGTAAATTATGcattatcttttgattaaaaaaaatcttaattgtTCTT
CTAGTTTTGACTCAACGAGATTTCACAGGCTCATCTGTCCTCATTGACCT
TGAGCAAGCCAAAAGAGGAGGAGCTGATGGTAATTTCATACGAAGAGCAA
TTTTGCGGGCCAGTGATCGACTACGGCGAAAACACAGAGACAGGACACGC
AGTACGCCAATGACAAGAAAAAACTTCAGATCGCCTAGAGCTGCTACAAA
TTCAATGAGTGACGAGGCAAAATATTGTAGTCTCGATAGAAGAAAAAGCC
CTGACCTGGGTATACAAATAAACAATGAAAGTCGAGATAAGACAATTAAT
CTAATTCGGAGTACATCATCCCCTTCAGGTAGTCCAATAAAGAAAGCGTT
CAGTAAACAAATAAGTGTTGATGAATCAGCACCCATTCTAcaaccaaaaa
agaaatcacCAAGCTCCTCAAGTAGTTCACAACCTGTCCATATAGAAGGG
AAAGTAGATTCACGAAATACTAATGAAAGGACATTACTTAAACCAAGAAG
TATGACGATAGGTGATATTCCTGTACCTAAGGAACTTGCATCAACATCTA
AAGACCAAACAACCAAATCTGAGGAGAAAATACCGTTAGGTCTAGAACCA
AGAATGAAAGACAAACCAGATATTCTAACAGCAGAAGAGGCTAAAAAATT
TCGAATGACTATGTCTCCAACTGACAAAAGTGAAATGTCAAGTAAAAATA
ATCCTCGGAGAAGTACTGACAGTGTCACAAACAATAACTATAATAGGCAA
CCAACGAATCCAGCGCATTATGTAATAGCTAAAAAGAAAGGTAATAAAAA
GACTCCAACACCACCACCAAGATCACCAGCTAGCCTCGGACTAACACCAC
AAACCATGTTTGATTTTCCACCAACGGAACCCAATAATGATATCACAGAT
GGCAAAGACAAAGTAAATAAGACTCAAGATTCAAGTACTAAAAGGAGGAC
TTATCATTCAGAAGGATCCGATGATGCGTTTGCCAGCTCTGAACCTTCAC
CACTACATTTTGATTATAGTAATATTGATTATTCAGATGAACCAGCATAT
GGTAATATCAGTCAAATAAGAAAGGACTCGTCAGATGACAGTTCTTCATC
ACAAATTGTTAATGCACACAATGCAAGACGTTGGAATGGAGCTTCAAAAC
ATTCTTCAGATCCACTTTGTTATGATGAATGGAAGAAAGCCACTGGAGAA
GGACAAGCTCAAAGTCTACAAAATTTCGATGCGCTAGACAATCTAGATTA
TATTAATGTTAAAAACAATACAATTCAAAAGCAGGATTCACACCATGGTT
CCTATGTAAACGTTAGTACGTCAGAATCTGGGAAACCTGAAATTGGTGGC
GATTTAAGGAACAGAAGGAAACATAAGCCAGCACCTCTAAATTTAGGTAA
TAAGCAAACAAAAACTTATAagaatgaatttgaaaagtatgatgatgatg
attcgAATATTTATCACCCCTTTGGGGGGTTGGATTCTGCAGATGGAAGT
AGCAGTGCATCTTCTATAATAAGTCGCAGACCAGGTGGCTCATATGAAAA
CATGGCTGGCAAAAGTAGCACACCAAGCAGTAACCATAATAGTGATTACT
TGAATTTAATGTCGCCAGCTAATGCCACTAAAAGTGGTGGGTCAATTAAT
TCTTCAAAGCCATCTATGGACTACGCagttttgactggaaaaatgaCTTC
TTATTCAAAATCAGTATCGACTTCACCTATCAGGGGTTCAGCTAGATCTC
CCATAGAAAAACCTAACAAAAGTGATTACACTCTGATTGACGGTAAAGCA
ACCGATGCACTGAATCGAGCAAGGGATACTAGAGATAAACAGCTAACAGG
AAACAAAACACCGACAAAAACCTTGAAATGA Coding sequence (CDS) from alignment at sc0000152_pilon:730549..734579+ >XLOC_040042 ID=XLOC_040042|Name=XLOC_040042|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5034bp|location=Sequence derived from alignment at sc0000152_pilon:730549..734579+ (Clytia hemisphaerica_ch_hm2_pilon)
ATggaattaattcaaaatttggtgttaaatAGAGAAGGAAAAAAGATgga
attaattcaaaatttggtgttaaatAGAGAAGGAAAAAAGTGGAAACAAC
GATGGGCATGTTTAAAGCGGGCATCACCTAAAAACTCTCAAGCTACAAAT
GaagTGGAAACAACGATGGGCATGTTTAAAGCGGGCATCACCTAAAAACT
CTCAAGCTACAAATGaagataATTTCCTTTACGATTTGTACGTGTTTCTT
TATAAAAGTGAAGAACATGCCCATGAAGGGAAAAACGCAAAACTTGTCAT
CCCCCTGACTGACTTTTGCGGTGTAGAGGCACGCAAAGACTACGACAAAT
CAAATAATGTTTTGGTGTTGATAACCACTTCACAAACCTCTTTCTTATCC
TTTGATAATGCTCTGTTACGTGATCAATGGATGCGAGCATTAGAAGACCA
ATTTGGTAAAGataATTTCCTTTACGATTTGTACGTGTTTCTTTATAAAA
GTGAAGAACATGCCCATGAAGGGAAAAACGCAAAACTTGTCATCCCCCTG
ACTGACTTTTGCGGTGTAGAGGCACGCAAAGACTACGACAAATCAAATAA
TGTTTTGGTGTTGATAACCACTTCACAAACCTCTTTCTTATCCTTTGATA
ATGCTCTGTTACGTGATCAATGGATGCGAGCATTAGAAGACCAATTTGGT
AAAGTTACTGCTTTCAACATAAACATACCAGacaaacagaagaaaaagaa
tgcAGAATCAACAATAAGGATTTACAGAAACTTCTTTTCAATTAcaaata
aaaatcttaaatgTATAAACAGATGGTATACCAAGGACATAAAAAGCTTC
TCTAGAGGGGAGGACTCACAGTTCATGTTCGAAATCTGTCCTGAACATAA
GACTAAAGGACTCCTTGTAAATATTGTGACTCCAAATGCCAATGAACTTC
TCGGAGCTTTTGAAGAAATCAAAGCTGACCAGGATGAGCCAGTTACTGCT
TTCAACATAAACATACCAGacaaacagaagaaaaagaatgcAGAATCAAC
AATAAGGATTTACAGAAACTTCTTTTCAATTAcaaataaaaatcttaaat
gTATAAACAGATGGTATACCAAGGACATAAAAAGCTTCTCTAGAGGGGAG
GACTCACAGTTCATGTTCGAAATCTGTCCTGAACATAAGACTAAAGGACT
CCTTGTAAATATTGTGACTCCAAATGCCAATGAACTTCTCGGAGCTTTTG
AAGAAATCAAAGCTGACCAGGATGAGCCAGTTTTGACTCAACGAGATTTC
ACAGGCTCATCTGTCCTCATTGACCTTGAGCAAGCCAAAAGAGGAGGAGC
TGATGGTAATTTCATACGAAGAGCAATTTTGCGGGCCAGTGATCGACTAC
GGCGAAAACACAGAGACAGGACACGCAGTACGCCAATGACAAGAAAAAAC
TTCAGATCGCCTAGAGCTGCTACAAATTCAATGAGTGACGAGGCAAAATA
TTGTAGTCTCGATAGAAGAAAAAGCCCTGACCTGGGTATACAAATAAACA
ATGAAAGTCGAGATAAGACAATTAATCTAATTCGGAGTACATCATCCCCT
TCAGGTAGTCCAATAAAGAAAGCGTTCAGTAAACAAATAAGTGTTGATGA
ATCAGCACCCATTCTAcaaccaaaaaagaaatcacCAAGCTCCTCAAGTA
GTTCACAACCTGTCCATATAGAAGGGAAAGTAGATTCACGAAATACTAAT
GAAAGGACATTACTTAAACCAAGAAGTATGACGATAGGTGATATTCCTGT
ACCTAAGGAACTTGCATCAACATCTAAAGACCAAACAACCAAATCTGAGG
AGAAAATACCGTTAGGTCTAGAACCAAGAATGAAAGACAAACCAGATATT
CTAACAGCAGAAGAGGCTAAAAAATTTCGAATGACTATGTCTCCAACTGA
CAAAAGTGAAATGTCAAGTAAAAATAATCCTCGGAGAAGTACTGACAGTG
TCACAAACAATAACTATAATAGGCAACCAACGAATCCAGCGCATTATGTA
ATAGCTAAAAAGAAAGGTAATAAAAAGACTCCAACACCACCACCAAGATC
ACCAGCTAGCCTCGGACTAACACCACAAACCATGTTTGATTTTCCACCAA
CGGAACCCAATAATGATATCACAGATGGCAAAGACAAAGTAAATAAGACT
CAAGATTCAAGTACTAAAAGGAGGACTTATCATTCAGAAGGATCCGATGA
TGCGTTTGCCAGCTCTGAACCTTCACCACTACATTTTGATTATAGTAATA
TTGATTATTCAGATGAACCAGCATATGGTAATATCAGTCAAATAAGAAAG
GACTCGTCAGATGACAGTTCTTCATCACAAATTGTTAATGCACACAATGC
AAGACGTTGGAATGGAGCTTCAAAACATTCTTCAGATCCACTTTGTTATG
ATGAATGGAAGAAAGCCACTGGAGAAGGACAAGCTCAAAGTCTACAAAAT
TTCGATGCGCTAGACAATCTAGATTATATTAATGTTAAAAACAATACAAT
TCAAAAGCAGGATTCACACCATGGTTCCTATGTAAACGTTAGTACGTCAG
AATCTGGGAAACCTGAAATTGGTGGCGATTTAAGGAACAGAAGGAAACAT
AAGCCAGCACCTCTAAATTTAGGTAATAAGCAAACAAAAACTTATAagaa
tgaatttgaaaagtatgatgatgatgattcgAATATTTATCACCCCTTTG
GGGGGTTGGATTCTGCAGATGGAAGTAGCAGTGCATCTTCTATAATAAGT
CGCAGACCAGGTGGCTCATATGAAAACATGGCTGGCAAAAGTAGCACACC
AAGCAGTAACCATAATAGTGATTACTTGAATTTAATGTCGCCAGCTAATG
CCACTAAAAGTGGTGGGTCAATTAATTCTTCAAAGCCATCTATGGACTAC
GCagttttgactggaaaaatgaCTTCTTATTCAAAATCAGTATCGACTTC
ACCTATCAGGGGTTCAGCTAGATCTCCCATAGAAAAACCTAACAAAAGTG
ATTACACTCTGATTGACGGTAAAGCAACCGATGCACTGAATCGAGCAAGG
GATACTAGAGATAAACAGCTAACAGGAAACAAAACACCGACAAAAACCTT
GAAATGATTTTGACTCAACGAGATTTCACAGGCTCATCTGTCCTCATTGA
CCTTGAGCAAGCCAAAAGAGGAGGAGCTGATGGTAATTTCATACGAAGAG
CAATTTTGCGGGCCAGTGATCGACTACGGCGAAAACACAGAGACAGGACA
CGCAGTACGCCAATGACAAGAAAAAACTTCAGATCGCCTAGAGCTGCTAC
AAATTCAATGAGTGACGAGGCAAAATATTGTAGTCTCGATAGAAGAAAAA
GCCCTGACCTGGGTATACAAATAAACAATGAAAGTCGAGATAAGACAATT
AATCTAATTCGGAGTACATCATCCCCTTCAGGTAGTCCAATAAAGAAAGC
GTTCAGTAAACAAATAAGTGTTGATGAATCAGCACCCATTCTAcaaccaa
aaaagaaatcacCAAGCTCCTCAAGTAGTTCACAACCTGTCCATATAGAA
GGGAAAGTAGATTCACGAAATACTAATGAAAGGACATTACTTAAACCAAG
AAGTATGACGATAGGTGATATTCCTGTACCTAAGGAACTTGCATCAACAT
CTAAAGACCAAACAACCAAATCTGAGGAGAAAATACCGTTAGGTCTAGAA
CCAAGAATGAAAGACAAACCAGATATTCTAACAGCAGAAGAGGCTAAAAA
ATTTCGAATGACTATGTCTCCAACTGACAAAAGTGAAATGTCAAGTAAAA
ATAATCCTCGGAGAAGTACTGACAGTGTCACAAACAATAACTATAATAGG
CAACCAACGAATCCAGCGCATTATGTAATAGCTAAAAAGAAAGGTAATAA
AAAGACTCCAACACCACCACCAAGATCACCAGCTAGCCTCGGACTAACAC
CACAAACCATGTTTGATTTTCCACCAACGGAACCCAATAATGATATCACA
GATGGCAAAGACAAAGTAAATAAGACTCAAGATTCAAGTACTAAAAGGAG
GACTTATCATTCAGAAGGATCCGATGATGCGTTTGCCAGCTCTGAACCTT
CACCACTACATTTTGATTATAGTAATATTGATTATTCAGATGAACCAGCA
TATGGTAATATCAGTCAAATAAGAAAGGACTCGTCAGATGACAGTTCTTC
ATCACAAATTGTTAATGCACACAATGCAAGACGTTGGAATGGAGCTTCAA
AACATTCTTCAGATCCACTTTGTTATGATGAATGGAAGAAAGCCACTGGA
GAAGGACAAGCTCAAAGTCTACAAAATTTCGATGCGCTAGACAATCTAGA
TTATATTAATGTTAAAAACAATACAATTCAAAAGCAGGATTCACACCATG
GTTCCTATGTAAACGTTAGTACGTCAGAATCTGGGAAACCTGAAATTGGT
GGCGATTTAAGGAACAGAAGGAAACATAAGCCAGCACCTCTAAATTTAGG
TAATAAGCAAACAAAAACTTATAagaatgaatttgaaaagtatgatgatg
atgattcgAATATTTATCACCCCTTTGGGGGGTTGGATTCTGCAGATGGA
AGTAGCAGTGCATCTTCTATAATAAGTCGCAGACCAGGTGGCTCATATGA
AAACATGGCTGGCAAAAGTAGCACACCAAGCAGTAACCATAATAGTGATT
ACTTGAATTTAATGTCGCCAGCTAATGCCACTAAAAGTGGTGGGTCAATT
AATTCTTCAAAGCCATCTATGGACTACGCagttttgactggaaaaatgaC
TTCTTATTCAAAATCAGTATCGACTTCACCTATCAGGGGTTCAGCTAGAT
CTCCCATAGAAAAACCTAACAAAAGTGATTACACTCTGATTGACGGTAAA
GCAACCGATGCACTGAATCGAGCAAGGGATACTAGAGATAAACAGCTAAC
AGGAAACAAAACACCGACAAAAACCTTGAAATGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000152_pilon | genome | sc0000152_pilon:730549..734579 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1261-2520:2772 |
| Aaloc | 643-1257:2157 |
| Aaloc | 355-639:1600 |
| Aaloc | 112-351:658 |
| Aaloc | 46-108:200 |
| Aaloc | 1-45:1 |
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