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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000133_pilon:912030..915198- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_039960 ID=XLOC_039960|Name=XLOC_039960|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3169bp|location=Sequence derived from alignment at sc0000133_pilon:912030..915198- (Clytia hemisphaerica_ch_hm2_pilon)
GATCGTTATCGTAACATTTTTTGCAGATTTCAACATTCAAACAACAAACA
GAAGTCAGTCAATAGAACAGCAACACAAAACCATACAGTGTTGAAACCTA
AATGTCAAGCTGAAGTACCTGAGGAAAATGGTAAATTCTTCTTTTAGGTC
TTTCCTAGATTTGAAATTGCTGAACAGTAATGCAAATGGTTTTCAGAGTC
TTGAAACGTTGATACATTGTTCCTTATATATGACCAAAGTCTTTTCTCAT
ACACTTCGTTCTTATCGAAAAAAAATATTTGTGCAGTATAACTCGGAAGA
TATCAAATAAACAATGTCATTACCTTAAGGGATCTGGTTTACTCCAAAGA
CAACCAAAAGACTAAGTGATCAGCGCACCAACACATTGAAACTGCCAAGT
CCACTATTTTCTGAAAAAGGTAATCATAAAATGGTACAAAATTGTTGAAA
TAATCCAAATATCAGTTATTGCTAAAGGAAGTTCCATATATATATAGTAC
ATTGCCAATATTAAGCATAGATAATCGAACAATTTCTAAGATACACTATG
AACAGTTTAAAATATTATTTTGATAGCAGCTTAACAAAACCAAAACTCTT
TCCTGTTCATTAGTTTCAGATAATGAGAAATCCCCAATCTATCAGCGCCT
GGAACCAAAAGGTACACCATCTTATTTCATGGCTTGAAAAAATAATAATA
TTACAACTGTCTAAAAGGGGTTGCTTTTGCTTGATATTTGGACTTTTCCT
GACGACTGACACCAAATCAAGCTGCATTACTTTTCAATCTTTAAGCACTT
CAAAACCAAACTAAAACTGATATGTTTGTTATAAATGTTTCTGTTTGATT
CATGTACAATTAGTTTTGAAACGACTTTTAAAGACCTATAACTTCTTTAA
TAAGGTAACAATAAATTATCATTAGCAAGGGAATAAGCATATGACAACAC
ATCTTTAAAATTTATAGCTAAAGTGTCCTGTACCAATTAAATAATAATAA
TAAAGCTTTACAGGTTTGCAGGCCACCGTGAAGACACATGGGCCTCTATA
AACCGCTCGTACTTTTTACAATGATCTTTTTGAAATAGAGTTTTTTTCGC
GGGCTCCCCCGGACTTTCCATTTTGTGTTGTCTTCCTTGATTTTAGCATT
CATTTTTTCGGCTTCCTTACACCATTCTTTGATTATCTGTCTTTCATTTT
TGGTCAAATCCTCTCTCACTCGGTAAGGAAAGCGTTTTTCTTTTGTTATT
GCTTGCAACACTGTGTTCTTGTCCTCTTCGTTCGTAAATGTGACTTTAAT
TGGTCGGTATCTCGCTTTATCTTCTCTTTCTTTCGTAAATTTCCCGATCC
GCTGCGTCTCGGTAATCTTTATATTCCTCAGATGGAGCCGCTGACCAATA
ATTTTATCATGGATAAATTCTTCGTCCTCGATTTTTGTTTCTTCTTCAGT
TTCATCTGCCGATTCATTCAATTGCAGAACTGTAATGGCTGAATTGGAGG
AGACCAAAAGAAAACTGAAAGAAAAAGGTCAGTTTACACCACTTTAATCA
CTTAATAAAATTTTTGATATTGCTATTCAATAAAAGTTGCAACATGTCCA
TTCATTTTTTCTGATTTGCTTAATTGTTAAAATTATGTAGAACTTTAAAA
TTGCAACAATGAAAACGAAAACAAAAGTTAATCATCCGAATGCTTAAACA
TCTCAGGGCTGGTTAGGAAATCAGCGATAAGTAACACCTTTAAGAATGTA
ACAATAAGATTATCTTCTCTTAGAAAATCAATTGAGACAAATCCAGACCA
TGCTGGTTCCTGACATTGTGTCAGCTGTTGAGAAATTAAATCACTTTATG
GGTGGAGACAAAGTGAGTTTTTTATTGAGTGTTATAATTGTTATCTTAAA
AATTGAATTTTCAAAGATTACTTTAAACTGTTTCAAACTTTATTTTCAGT
AGTTTGAGTCAATTCATTGTAAAGCTTAACAAGATTCCTAATAGCAAATC
TCATATTACATTAGGTTGTTGAGGAAAGCTTGGGAAGATCTTTCTCAAAT
GACGAGCCATTTTTGTCAACTAATCAACAGGTGAGAATGATACGCCTTAA
TTTCATAAAGCTAACAATTTGATTAAGACGAAACTTGGATCATAATTCAA
ATTGTGATTTTTCTTACACATGATCCTCAAATATTTGCACTCAGTATGTT
CCCTCACAAAGTTTTTTATTTGGTATTGAAAATTATGTTTCTAGTCTGTA
CTATCAAAAATGTTTTTTTAGAGTATGGGGTGCATCTCACCACTAACACA
CAACTCCCTAAAGGAAAAAACATACTTCCTGACACCCAAGCTAAAAGCTA
CTACATCCACACCCAAGACAACACCCTCCTCCATCAACAAATCCAACAAA
ACAGCATCATCAACATCCCAAGTTAACAAGCCCATCCAAACACCATCGTC
AGTCGTCAACAAGCCCACCCAAACATCATCGTCAGTCGTCAGCAAGCCCA
TCCAAACATCATCGTCAGTCGTCAGCAAGCCCATCCAAACATCATCGTCA
GTCGTCAGCAAGCCCATCCAAACATCATCGTCAGTCGTCAGTAAGCCAAT
CAAAAAGTCACCATCTACTTTATGCAAGCCCATCCAAATAGCCACAAATC
ATAATCAAAATTCAAAACCAATAGAAAGTCAGACAGCAACCAACCAATCA
AGTCTAACTTCAAATAATTCATCTAATGAAACATCAACCGGGGTGAGAAA
CTTTCGCTACTTTGAAACGCTAATCTCAAATGTCACCCTCATTTCAAATC
TTTTAGATCTCAACCGTCTAACCCTAGATTTTAAGAAATACATTTATTAT
GATTTTGCCCGAGAACCAATATTTCTTTGAGGGCACTTCCCATAAAACAC
TAATTAAACTTGTCTTTCACACCTTTCAGACAAGCACCCCTGTAAGATAT
AAATTGCTATCTGAAACTTGATACAAAACATAAACAATCAAATGATTCAA
AATTTTCTCCATTTAGTTAAAACAGCTGGGCGATTGCACACCACACATTT
TTTCAACGGACATGGAGATGACAAGGATTAGGGCGAAAACAAACAACATG
GCATCTTGGCGCAAATTTGTAAATTTAATCCTGGGTTTAAAATTTACAAA
GGACGAACTTAAAAAGTAA Coding sequence (CDS) from alignment at sc0000133_pilon:912030..915198- >XLOC_039960 ID=XLOC_039960|Name=XLOC_039960|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1914bp|location=Sequence derived from alignment at sc0000133_pilon:912030..915198- (Clytia hemisphaerica_ch_hm2_pilon)
GATCGTTATCGTAACATTTTTTGCAGATTTCAACATTCAAACAACAAACA
GAAGTCAGTCAATAGAACAGCAACACAAAACCATACAGTGTTGAAACCTA
AATGTCAAGCTGAAGTACCTGAGGAAAATGGATCGTTATCGTAACATTTT
TTGCAGATTTCAACATTCAAACAACAAACAGAAGTCAGTCAATAGAACAG
CAACACAAAACCATACAGTGTTGAAACCTAAATGTCAAGCTGAAGTACCT
GAGGAAAATGTTTCAGATAATGAGAAATCCCCAATCTATCAGCGCCTGGA
ACCAAAAGTTTCAGATAATGAGAAATCCCCAATCTATCAGCGCCTGGAAC
CAAAAGAAAATCAATTGAGACAAATCCAGACCATGCTGGTTCCTGACATT
GTGTCAGCTGTTGAGAAATTAAATCACTTTATGGGTGGAGACAAAAAAAT
CAATTGAGACAAATCCAGACCATGCTGGTTCCTGACATTGTGTCAGCTGT
TGAGAAATTAAATCACTTTATGGGTGGAGACAAAGTTGTTGAGGAAAGCT
TGGGAAGATCTTTCTCAAATGACGAGCCATTTTTGTCAACTAATCAACAG
GTTGTTGAGGAAAGCTTGGGAAGATCTTTCTCAAATGACGAGCCATTTTT
GTCAACTAATCAACAGAGTATGGGGTGCATCTCACCACTAACACACAACT
CCCTAAAGGAAAAAACATACTTCCTGACACCCAAGCTAAAAGCTACTACA
TCCACACCCAAGACAACACCCTCCTCCATCAACAAATCCAACAAAACAGC
ATCATCAACATCCCAAGTTAACAAGCCCATCCAAACACCATCGTCAGTCG
TCAACAAGCCCACCCAAACATCATCGTCAGTCGTCAGCAAGCCCATCCAA
ACATCATCGTCAGTCGTCAGCAAGCCCATCCAAACATCATCGTCAGTCGT
CAGCAAGCCCATCCAAACATCATCGTCAGTCGTCAGTAAGCCAATCAAAA
AGTCACCATCTACTTTATGCAAGCCCATCCAAATAGCCACAAATCATAAT
CAAAATTCAAAACCAATAGAAAGTCAGACAGCAACCAACCAATCAAGTCT
AACTTCAAATAATTCATCTAATGAAACATCAACCGGGAGTATGGGGTGCA
TCTCACCACTAACACACAACTCCCTAAAGGAAAAAACATACTTCCTGACA
CCCAAGCTAAAAGCTACTACATCCACACCCAAGACAACACCCTCCTCCAT
CAACAAATCCAACAAAACAGCATCATCAACATCCCAAGTTAACAAGCCCA
TCCAAACACCATCGTCAGTCGTCAACAAGCCCACCCAAACATCATCGTCA
GTCGTCAGCAAGCCCATCCAAACATCATCGTCAGTCGTCAGCAAGCCCAT
CCAAACATCATCGTCAGTCGTCAGCAAGCCCATCCAAACATCATCGTCAG
TCGTCAGTAAGCCAATCAAAAAGTCACCATCTACTTTATGCAAGCCCATC
CAAATAGCCACAAATCATAATCAAAATTCAAAACCAATAGAAAGTCAGAC
AGCAACCAACCAATCAAGTCTAACTTCAAATAATTCATCTAATGAAACAT
CAACCGGGTTAAAACAGCTGGGCGATTGCACACCACACATTTTTTCAACG
GACATGGAGATGACAAGGATTAGGGCGAAAACAAACAACATGGCATCTTG
GCGCAAATTTGTAAATTTAATCCTGGGTTTAAAATTTACAAAGGACGAAC
TTAAAAAGTAATTAAAACAGCTGGGCGATTGCACACCACACATTTTTTCA
ACGGACATGGAGATGACAAGGATTAGGGCGAAAACAAACAACATGGCATC
TTGGCGCAAATTTGTAAATTTAATCCTGGGTTTAAAATTTACAAAGGACG
AACTTAAAAAGTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000133_pilon | genome | sc0000133_pilon:912030..915198 - |
Properties
| Property Name | Value |
|---|
| Aaloc | 805-957:154 |
| Aaloc | 334-804:899 |
| Aaloc | 268-333:1156 |
| Aaloc | 181-267:1395 |
| Aaloc | 133-177:2555 |
| Aaloc | 1-129:3170 |
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