XLOC_039904 (mRNA) -

Overview


Name	XLOC_039904
Unique Name	XLOC_039904
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000450_pilon:107922..111206-
coding sequence from alignment at sc0000450_pilon:107922..111206-

mRNA from alignment at sc0000450_pilon:107922..111206-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_039904 ID=XLOC_039904|Name=XLOC_039904|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3285bp|location=Sequence derived from alignment at sc0000450_pilon:107922..111206- (Clytia hemisphaerica_ch_hm2_pilon)
TTCCACAAAAATACATTACAAACTCTTATAAGATCTGAAAGCTGCATTTT
GAATTTAGAGTTGACAAACTTCAGAGAAAACATACTTTTAACCAGTATTA
TTGATATAAGCAGAGACAACTCTTCTCCTCACAAGAGCAAATTGAACGTT
AATAAGTGTGATATTTATGGAAACTACCGACAGTATGAATCATACATCAA
AGAGTATATTTTCAAAGTACATGCTTCCAAAGTTATTATTGAAAACTCAA
ATATCACACTGAATCATGCATTTTCAATGTTTGAGTGCTTGGACAGTTGT
GTTCACTGCAGTCTGGAAATAAAGAAAAGTTATTTCTCTAAGAATAGATT
TGAATTTAAAATGATATATGTTCCTTGCAACAATCTTTTCATCAGTAACA
GCTATTTTGAACAAAATACAATTATACAAAATATGATTAAAGATTCAGAA
AAGAAGGACAATCGCAATGCAAGATTTTTATTGACCACAACAAAGTTTAT
GAACAATAGCTGTTACAACTTGATCAATTTCCAGAAGGAAGTTACGATTT
CTAAAGTAGTGATGCAAAAAAATATTATTGGGAATACTGGAATACAATCG
CGTCAAAATATAGTGATCGAAAGTAGCGAGTTTGTACAAAACAGAATCAA
ACAGTTTTTCATAATCCAATATCGACATTTGAAAATAAGACAGTCTTACT
TCAAACAAAACTATATACAACGTGGCAGCATAATTCAGCAAAGATTTGGA
AGCAAAAATAACATTTTAAAACTTGACATTTTTTCATCAAAATTCATTGA
TAATGAACTGGCGCATGCCATGATAGAAACTTGGTATGGTAAAACAAACA
TTCAAAACAGTTTCATTAATGGAAATAAACTTGTCAATATCATGGCATCT
AAAGTCAGTACATTGAATTTTATTTCAACAAATATTGAGCATAACATTGC
TTCTGATTCATTGTTCTACATTGAGTTAACTGATAGACACGAACAAAGTG
TGAGTGAATTTGTTTTTGAGAACAATACAGCAACAAGAAACTTTGCCAAA
ATTGACTTTTTGACCAGTTTCAAGTCTACGGTAACATTGAAACATAATAA
CATTACTGAGAATGATTTTTATAGCTTTGCAACATTCCATAAAGGAACAT
TTTGGGTTGAATCCTTAAGCCTTCAAGACAATAAAGTAAGTGGCATAGGA
AAGATGATAAAGTATGATGGTTGTGATGCAAAAGGTTTGAGTGTGAACCT
TAAAGATATTTACTATTCAACTTCAAAAGTGAAACAACCTGGCAATGCCA
TCATGGAATTCAGATTAAAACATGGGAAGTTTACAATGAGAAATATATCA
GTTGTTTTAAAGGGAAGGCCAAATTCAAAATCCAATGTGATGTCCTTATC
CCTTGATATAAGAAATACTGATCATATTCTTGAAGGATTTTCTGTTGCTT
GTCCAATAAACCAGAATCCTGTTTCATCAATCACTAAATCAAAAACAGAA
TTTGATTATCAACTTGTTTGTCAACCTTGTGACAGGGGTCTATACATGAC
TTTAAGTGGGCATAAAAAAATCAAAGGCATACTAAAAGCATACAGGCTTG
AAAACATTAATACTGACCAAGAAGAAAATATTACAGTAATTGACAGATTC
CTTGAAGTGAAATCTAACTTTTCATGCAAATTTTGCCCACCCGGGGGAGA
CTGTAGAAAACAAATCAAAAGTCAAGACAGTTTTTATGGTTTTATCAATA
AAAATCATGAAATGGAATTTATCTCATGTCCAGATTTATACTGCTGTTCA
AACCATGGAAAACCTTGTAATTCATTTAATACATGTAATCTTTATCGTAC
CGGTACTCTGTGTGGAAGTTGTAAAAAAGGATATTATGTGAACTATTTTT
CTAATAATTGCATACCATCGTTTAGATGCAGTAACAATCATCGTGTTTGG
TTTTGGTTTATTTATTTTGCATTTTCAATTACTTTGGCATTGTTGTTGTG
CTTTACAAAGCCAATTGTATCATATTTAAAAAATAACAAGTCTAAAATCA
TTTCTTCAATCAAACAAAAACTACCGTGCTGTTTTAGGAAGCATGAACAG
AATCCTAGTCCATCATCAAAAAGTCTTAAGGCTGACCTTGGAAGTGAATT
ATGCGTAATAAACAAAAGCAATTACCAAGAGACAAATGAACATCTACTGG
TGGAGAAATCAGACAACACTAAAATAGCAGCACCACAAGATTTACCATTC
TCACCTATCTTCAATATCCTTGTTGGATTTTATCAAGCCAAATCATTACT
GACGATAAAGCTTAATGATTTGTACCAGCCACCAACATCATTTATATCAG
GATTTTTCAACATTGAAATGATCACCAACAACCTTCAATCTTTTTGTCCA
TCAATTACAACAACTGTTATTTACAGAGAATTCTTGAAAACATATGCTTC
AACTATTATTATGCTGACAACAGTTCTATCATCGTTATTATTTACAAAAT
TGATTAATCGGGTTTGCAATAAAAGAACATCTTCCATAATAGACACTTTT
TCCATAGGCTTTTTTACCATAATGGCATTCTGTTATAAAAACTTATCCAA
AATATCTTTCAATTTCATACATTGTGTCCCAATTAAAGAGACAGCTGTTT
TGTATATTGCAGGAGATATTGAATGTTATACCAGTTGGCAAATCGCAAAT
TTCATTTTCTTGGCAATTTGGGTGCTTCCTTTCCCTATTGCATCTACAGC
AGCATATAACCTTCACAAGAAAAAACACATCAGTGTGTGGCTGTTTATAA
CATGCTTGACATTTCCAATTATGACACCTTTCTTTTATTTGAGGAAGAAA
CAAAGATGGCTCTCAGAATCAGAAGAAAAAAAAATACAAGAAAAACTTTA
TGAAACATTTGAAACACCATATAAAACCAACATGTTTTGGTGGGAAGCTT
GGCGCTTATATGAACGGTTGATCTTATCTTTCTTGGCAACATATCTAATT
GATCCAGTAGTCCGCATGACCATTCTAGCACCTATCATAACAATCTACTT
GATAATTCATTACTATGTTAATCCTTATAAAAACAATGTTCTTACTAAAC
TGGATTTATCTTCATATTTTTGTTTATGTTTACATGCGGTGATCAATATG
TTTCGATCAGTTGTATACATTCATAGTTTACCTCTACAATTTCCAATAGA
CTTTGGAGTGAAAATCACAAATGTAATGGAGGAAATGTTTACACCTTTAT
GGATATTACTAGCATTGCTGATACATAAAAAACTT

Coding sequence (CDS) from alignment at sc0000450_pilon:107922..111206-

>XLOC_039904 ID=XLOC_039904|Name=XLOC_039904|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=6570bp|location=Sequence derived from alignment at sc0000450_pilon:107922..111206- (Clytia hemisphaerica_ch_hm2_pilon)
TTCCACAAAAATACATTACAAACTCTTATAAGATCTGAAAGCTGCATTTT
GAATTTAGAGTTGACAAACTTCAGAGAAAACATACTTTTAACCAGTATTA
TTGATATAAGCAGAGACAACTCTTCTCCTCACAAGAGCAAATTGAACGTT
AATAAGTGTGATATTTATGGAAACTACCGACAGTATGAATCATACATCAA
AGAGTATATTTTCAAAGTACATGCTTCCAAAGTTATTATTGAAAACTCAA
ATATCACACTGAATCATGCATTTTCAATGTTTGAGTGCTTGGACAGTTGT
GTTCACTGCAGTCTGGAAATAAAGAAAAGTTATTTCTCTAAGAATAGATT
TGAATTTAAAATGATATATGTTCCTTGCAACAATCTTTTCATCAGTAACA
GCTATTTTGAACAAAATACAATTATACAAAATATGATTAAAGATTCAGAA
AAGAAGGACAATCGCAATGCAAGATTTTTATTGACCACAACAAAGTTTAT
GAACAATAGCTGTTACAACTTGATCAATTTCCAGAAGGAAGTTACGATTT
CTAAAGTAGTGATGCAAAAAAATATTATTGGGAATACTGGAATACAATCG
CGTCAAAATATAGTGATCGAAAGTAGCGAGTTTGTACAAAACAGAATCAA
ACAGTTTTTCATAATCCAATATCGACATTTGAAAATAAGACAGTCTTACT
TCAAACAAAACTATATACAACGTGGCAGCATAATTCAGCAAAGATTTGGA
AGCAAAAATAACATTTTAAAACTTGACATTTTTTCATCAAAATTCATTGA
TAATGAACTGGCGCATGCCATGATAGAAACTTGGTATGGTAAAACAAACA
TTCAAAACAGTTTCATTAATGGAAATAAACTTGTCAATATCATGGCATCT
AAAGTCAGTACATTGAATTTTATTTCAACAAATATTGAGCATAACATTGC
TTCTGATTCATTGTTCTACATTGAGTTAACTGATAGACACGAACAAAGTG
TGAGTGAATTTGTTTTTGAGAACAATACAGCAACAAGAAACTTTGCCAAA
ATTGACTTTTTGACCAGTTTCAAGTCTACGGTAACATTGAAACATAATAA
CATTACTGAGAATGATTTTTATAGCTTTGCAACATTCCATAAAGGAACAT
TTTGGGTTGAATCCTTAAGCCTTCAAGACAATAAAGTAAGTGGCATAGGA
AAGATGATAAAGTATGATGGTTGTGATGCAAAAGGTTTGAGTGTGAACCT
TAAAGATATTTACTATTCAACTTCAAAAGTGAAACAACCTGGCAATGCCA
TCATGGAATTCAGATTAAAACATGGGAAGTTTACAATGAGAAATATATCA
GTTGTTTTAAAGGGAAGGCCAAATTCAAAATCCAATGTGATGTCCTTATC
CCTTGATATAAGAAATACTGATCATATTCTTGAAGGATTTTCTGTTGCTT
GTCCAATAAACCAGAATCCTGTTTCATCAATCACTAAATCAAAAACAGAA
TTTGATTATCAACTTGTTTGTCAACCTTGTGACAGGGGTCTATACATGAC
TTTAAGTGGGCATAAAAAAATCAAAGGCATACTAAAAGCATACAGGCTTG
AAAACATTAATACTGACCAAGAAGAAAATATTACAGTAATTGACAGATTC
CTTGAAGTGAAATCTAACTTTTCATGCAAATTTTGCCCACCCGGGGGAGA
CTGTAGAAAACAAATCAAAAGTCAAGACAGTTTTTATGGTTTTATCAATA
AAAATCATGAAATGGAATTTATCTCATGTCCAGATTTATACTGCTGTTCA
AACCATGGAAAACCTTGTAATTCATTTAATACATGTAATCTTTATCGTAC
CGGTACTCTGTGTGGAAGTTGTAAAAAAGGATATTATGTGAACTATTTTT
CTAATAATTGCATACCATCGTTTAGATGCAGTAACAATCATCGTGTTTGG
TTTTGGTTTATTTATTTTGCATTTTCAATTACTTTGGCATTGTTGTTGTG
CTTTACAAAGCCAATTGTATCATATTTAAAAAATAACAAGTCTAAAATCA
TTTCTTCAATCAAACAAAAACTACCGTGCTGTTTTAGGAAGCATGAACAG
AATCCTAGTCCATCATCAAAAAGTCTTAAGGCTGACCTTGGAAGTGAATT
ATGCGTAATAAACAAAAGCAATTACCAAGAGACAAATGAACATCTACTGG
TGGAGAAATCAGACAACACTAAAATAGCAGCACCACAAGATTTACCATTC
TCACCTATCTTCAATATCCTTGTTGGATTTTATCAAGCCAAATCATTACT
GACGATAAAGCTTAATGATTTGTACCAGCCACCAACATCATTTATATCAG
GATTTTTCAACATTGAAATGATCACCAACAACCTTCAATCTTTTTGTCCA
TCAATTACAACAACTGTTATTTACAGAGAATTCTTGAAAACATATGCTTC
AACTATTATTATGCTGACAACAGTTCTATCATCGTTATTATTTACAAAAT
TGATTAATCGGGTTTGCAATAAAAGAACATCTTCCATAATAGACACTTTT
TCCATAGGCTTTTTTACCATAATGGCATTCTGTTATAAAAACTTATCCAA
AATATCTTTCAATTTCATACATTGTGTCCCAATTAAAGAGACAGCTGTTT
TGTATATTGCAGGAGATATTGAATGTTATACCAGTTGGCAAATCGCAAAT
TTCATTTTCTTGGCAATTTGGGTGCTTCCTTTCCCTATTGCATCTACAGC
AGCATATAACCTTCACAAGAAAAAACACATCAGTGTGTGGCTGTTTATAA
CATGCTTGACATTTCCAATTATGACACCTTTCTTTTATTTGAGGAAGAAA
CAAAGATGGCTCTCAGAATCAGAAGAAAAAAAAATACAAGAAAAACTTTA
TGAAACATTTGAAACACCATATAAAACCAACATGTTTTGGTGGGAAGCTT
GGCGCTTATATGAACGGTTGATCTTATCTTTCTTGGCAACATATCTAATT
GATCCAGTAGTCCGCATGACCATTCTAGCACCTATCATAACAATCTACTT
GATAATTCATTACTATGTTAATCCTTATAAAAACAATGTTCTTACTAAAC
TGGATTTATCTTCATATTTTTGTTTATGTTTACATGCGGTGATCAATATG
TTTCGATCAGTTGTATACATTCATAGTTTACCTCTACAATTTCCAATAGA
CTTTGGAGTGAAAATCACAAATGTAATGGAGGAAATGTTTACACCTTTAT
GGATATTACTAGCATTGCTGATACATAAAAAACTTTTCCACAAAAATACA
TTACAAACTCTTATAAGATCTGAAAGCTGCATTTTGAATTTAGAGTTGAC
AAACTTCAGAGAAAACATACTTTTAACCAGTATTATTGATATAAGCAGAG
ACAACTCTTCTCCTCACAAGAGCAAATTGAACGTTAATAAGTGTGATATT
TATGGAAACTACCGACAGTATGAATCATACATCAAAGAGTATATTTTCAA
AGTACATGCTTCCAAAGTTATTATTGAAAACTCAAATATCACACTGAATC
ATGCATTTTCAATGTTTGAGTGCTTGGACAGTTGTGTTCACTGCAGTCTG
GAAATAAAGAAAAGTTATTTCTCTAAGAATAGATTTGAATTTAAAATGAT
ATATGTTCCTTGCAACAATCTTTTCATCAGTAACAGCTATTTTGAACAAA
ATACAATTATACAAAATATGATTAAAGATTCAGAAAAGAAGGACAATCGC
AATGCAAGATTTTTATTGACCACAACAAAGTTTATGAACAATAGCTGTTA
CAACTTGATCAATTTCCAGAAGGAAGTTACGATTTCTAAAGTAGTGATGC
AAAAAAATATTATTGGGAATACTGGAATACAATCGCGTCAAAATATAGTG
ATCGAAAGTAGCGAGTTTGTACAAAACAGAATCAAACAGTTTTTCATAAT
CCAATATCGACATTTGAAAATAAGACAGTCTTACTTCAAACAAAACTATA
TACAACGTGGCAGCATAATTCAGCAAAGATTTGGAAGCAAAAATAACATT
TTAAAACTTGACATTTTTTCATCAAAATTCATTGATAATGAACTGGCGCA
TGCCATGATAGAAACTTGGTATGGTAAAACAAACATTCAAAACAGTTTCA
TTAATGGAAATAAACTTGTCAATATCATGGCATCTAAAGTCAGTACATTG
AATTTTATTTCAACAAATATTGAGCATAACATTGCTTCTGATTCATTGTT
CTACATTGAGTTAACTGATAGACACGAACAAAGTGTGAGTGAATTTGTTT
TTGAGAACAATACAGCAACAAGAAACTTTGCCAAAATTGACTTTTTGACC
AGTTTCAAGTCTACGGTAACATTGAAACATAATAACATTACTGAGAATGA
TTTTTATAGCTTTGCAACATTCCATAAAGGAACATTTTGGGTTGAATCCT
TAAGCCTTCAAGACAATAAAGTAAGTGGCATAGGAAAGATGATAAAGTAT
GATGGTTGTGATGCAAAAGGTTTGAGTGTGAACCTTAAAGATATTTACTA
TTCAACTTCAAAAGTGAAACAACCTGGCAATGCCATCATGGAATTCAGAT
TAAAACATGGGAAGTTTACAATGAGAAATATATCAGTTGTTTTAAAGGGA
AGGCCAAATTCAAAATCCAATGTGATGTCCTTATCCCTTGATATAAGAAA
TACTGATCATATTCTTGAAGGATTTTCTGTTGCTTGTCCAATAAACCAGA
ATCCTGTTTCATCAATCACTAAATCAAAAACAGAATTTGATTATCAACTT
GTTTGTCAACCTTGTGACAGGGGTCTATACATGACTTTAAGTGGGCATAA
AAAAATCAAAGGCATACTAAAAGCATACAGGCTTGAAAACATTAATACTG
ACCAAGAAGAAAATATTACAGTAATTGACAGATTCCTTGAAGTGAAATCT
AACTTTTCATGCAAATTTTGCCCACCCGGGGGAGACTGTAGAAAACAAAT
CAAAAGTCAAGACAGTTTTTATGGTTTTATCAATAAAAATCATGAAATGG
AATTTATCTCATGTCCAGATTTATACTGCTGTTCAAACCATGGAAAACCT
TGTAATTCATTTAATACATGTAATCTTTATCGTACCGGTACTCTGTGTGG
AAGTTGTAAAAAAGGATATTATGTGAACTATTTTTCTAATAATTGCATAC
CATCGTTTAGATGCAGTAACAATCATCGTGTTTGGTTTTGGTTTATTTAT
TTTGCATTTTCAATTACTTTGGCATTGTTGTTGTGCTTTACAAAGCCAAT
TGTATCATATTTAAAAAATAACAAGTCTAAAATCATTTCTTCAATCAAAC
AAAAACTACCGTGCTGTTTTAGGAAGCATGAACAGAATCCTAGTCCATCA
TCAAAAAGTCTTAAGGCTGACCTTGGAAGTGAATTATGCGTAATAAACAA
AAGCAATTACCAAGAGACAAATGAACATCTACTGGTGGAGAAATCAGACA
ACACTAAAATAGCAGCACCACAAGATTTACCATTCTCACCTATCTTCAAT
ATCCTTGTTGGATTTTATCAAGCCAAATCATTACTGACGATAAAGCTTAA
TGATTTGTACCAGCCACCAACATCATTTATATCAGGATTTTTCAACATTG
AAATGATCACCAACAACCTTCAATCTTTTTGTCCATCAATTACAACAACT
GTTATTTACAGAGAATTCTTGAAAACATATGCTTCAACTATTATTATGCT
GACAACAGTTCTATCATCGTTATTATTTACAAAATTGATTAATCGGGTTT
GCAATAAAAGAACATCTTCCATAATAGACACTTTTTCCATAGGCTTTTTT
ACCATAATGGCATTCTGTTATAAAAACTTATCCAAAATATCTTTCAATTT
CATACATTGTGTCCCAATTAAAGAGACAGCTGTTTTGTATATTGCAGGAG
ATATTGAATGTTATACCAGTTGGCAAATCGCAAATTTCATTTTCTTGGCA
ATTTGGGTGCTTCCTTTCCCTATTGCATCTACAGCAGCATATAACCTTCA
CAAGAAAAAACACATCAGTGTGTGGCTGTTTATAACATGCTTGACATTTC
CAATTATGACACCTTTCTTTTATTTGAGGAAGAAACAAAGATGGCTCTCA
GAATCAGAAGAAAAAAAAATACAAGAAAAACTTTATGAAACATTTGAAAC
ACCATATAAAACCAACATGTTTTGGTGGGAAGCTTGGCGCTTATATGAAC
GGTTGATCTTATCTTTCTTGGCAACATATCTAATTGATCCAGTAGTCCGC
ATGACCATTCTAGCACCTATCATAACAATCTACTTGATAATTCATTACTA
TGTTAATCCTTATAAAAACAATGTTCTTACTAAACTGGATTTATCTTCAT
ATTTTTGTTTATGTTTACATGCGGTGATCAATATGTTTCGATCAGTTGTA
TACATTCATAGTTTACCTCTACAATTTCCAATAGACTTTGGAGTGAAAAT
CACAAATGTAATGGAGGAAATGTTTACACCTTTATGGATATTACTAGCAT
TGCTGATACATAAAAAACTT

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_039904	XLOC_039904-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000450_pilon	genome	sc0000450_pilon:107922..111206 -

Properties


Property Name	Value
Aaloc	1-3285:3286

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XLOC_039904 (mRNA) -