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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000450_pilon:115983..119271+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_039898 ID=XLOC_039898|Name=XLOC_039898|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3289bp|location=Sequence derived from alignment at sc0000450_pilon:115983..119271+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCAACGACTTGGGGTAATGATGATCGGGCATCATTTTACACAACAAA
GCACTCTTGGCGTGGAAAGtaagtttttgtattttttcatattctttGTT
TTATTCTGTTAGACTCATTACAACTGCGGATACTTGCTGAAAATAAATCT
AAATCTTCAAAAACTCTCACTCGTTACTTCTGAGTTAAAAGTTTTACTGA
AACTTTTGTTCCTTCTTGTTTCAGGTATAAACGGGTTTTCTCCATCGGCT
CAAAAGCTATCACAACATACAACCCATCTACTCTTGAAGTAACAAATCAA
GTAtgttatctttattttttgactttacTTAACCCTTAGACACCGAGGGA
CGCCAATATgcgtccaaaacaagccaaaatactgagTCTCAGTCTTGACG
ccatagctcctgaccacttgatttaaaggggtatataaaccgaatgcttt
tagaaagagtataaagatagctttccaatggtaccaaaaccatcttctag
ATCAAaggctacaagcttttatggcactttaaagtttcgagtttcaaaaa
taaaattagaaaaatttcaactttttcaaaaaaaaaacagcgcgcACAAA
AGGTTaaatattcatttattttatcaTATCATCCATTATCCTTTATTAAT
TTAACAAATTTGGCCTgggtgattttttaaagtatgaaagttcttacccc
ctttattctgtttttaagttgattttttctctttttttttttagtggGCC
TACAATGACTTCTTCAGTATCAGTCCAAGTTCAAAAACACTCAATGAACT
TATCATTGTTGTCCGTAAAGGTATGTTTGAGAAGCTACTGGAATAAATAT
TGGCGTCAGGAAAATCATactcattataaaaacactggtctggaaggctt
tgttggcttttgtctctttttattgtcaAAAGTTGGAGCTtgcgtaccaa
aatcgatttattctgcaaactttttgataatgtgattagaaaatagacca
atcccaagatgagattttggtaacgtgatcaaaaagtatgcaaatcgcaa
cttgtattgaacaaaaagctaaaacaatacattgccagactggggttttt
tataatgactatggtaaTATCCAGCTTTAATTTCTCAATTTCAGCTATCC
TAAAGGGAACCGTTATCTGTGAAAATAACTTTAGCACAGTTTTGTGGTGC
AAAAATGTAagattgtaattttttaattagttCCCTTGTGGTGCTAAAGT
CTTGTTTTAAAACATGGGTTGGAATAAAAGTTAATTTGCATTAAAAATAT
TACGCTCAATtacttttcagcaaaagaagGCAAGAAAACAGTTTCAATGA
CGTTCTCCTCAGATCATAGAGCAGACCTTCTCACCTATGCATTAGTAAGT
TTGttgcaaattgtttttttaaaccaataaaTCAAACTAGGCCTTACAAA
AATGATTATCAAGCTTTAAGATAGAACAAGATTGACACAACAGAGGTACT
GATTTGAAgaactacaatttttttctttaaaatggcaataataTCTTTTG
GATCCGGAAGTTTTGAGGTAGTGTTGGTCGGATGATTGCAAACCAACATT
TAAGTCCATCCTCAGATGAAGTCTAGAATTATGCTTTTTACAGTTTTGTA
aatcttaaaattattttttctagaaaatgaGGACTGCTTTTGCTGATCAG
AAGCAATTGAAAGAGCTGGTATGAAAATTTCCCCTTTGTAAACTCCATTT
TGAGTTTTCTTTTGAAGTTAAAAGTCCAAAAACCTTTCAGCTGCTGCAAA
CGTTTACTCTTTCTTTATACAACGCAATATACTACATCTatgtgttttga
atttttggggATACCTCTGCCTTTATTCTCTTCAAACGAAAGGTTTGCTT
AATAAATCTATGCGTCTTGGAAGTTTTGTGTTCCAtactatcaaaattta
ttgataattttttcatagAATTTCAATGCATTCAAACATCATTGGAGTGA
AAACCGAATGCCAATCATCCTTAGAGTCACGCCATGCTCTTTAGATCAAG
TGGATCGCGCAACAAATAGAATTCTGTGTTCATACGATTACAAAGACATG
GATGGGCTAGCTGAGGTAGCACTACTGCCCTGGAAATTTGTTAGGAAGat
ttaaatgttttgataaCAAAATAATACCTAAATTATTTAAGATCAGTCCT
TGATATTTCTGTGAAATTCTGAAGACTATTAACTAAGACTTCGAATAACA
CTGTTCCTacttctaaaaatgtttttaaattttttcaaggtATCCGATTA
CCCAGGAGGATTTGTTGTTGTTCATGGTGGCTTCAATCGACTGGTAAGTT
CTTTACAACTATTTCCCAAAAGGTCCCAGATTATAATGATCCATATTAAT
TgtctttgttgatttttgtgGAAAATTCTCAAGAGGCACTGTATGTTTTT
ACGACATGCTATTTTACtaagagaaaaagaaacaaaaaaggggttGGACC
TTTTTAACGAAGTCCCAAGTTGACGCTATGACTAAGTTTTAATGCTTAAT
GTGTATTTTATAGTCTGAATCATTGATATAATTtattatgttaatttttt
tagcatttattttcttcggagtcaaaagaagaaattatgaAGAAGGTTGT
AGAGTTTGCATACAACCATATTGGTATCAATATAAAGTAAATCATCGTTT
TTTCCCGACTTTCAAACTATTTGCAATTATTGTTTCAATCTGTTTCGATC
TTGCTTggacttttttgaagtttttctatTTGGCGAAATGGTTCTTTTTG
AGTTGAACCCGACATAAATCACAATTACATTCATTACTTTGAATACATAG
TCTACAATCCTTGAACTGTGGAAAGTTGTAGCAATTGTTGGttgattttc
atcttttgtttttaatccaaacgtgtttttgatactttcatgtgtatttt
tttttcagaaaaagaaaagaaccTATAGATTTCgattattttcaaacaag
acGTCTTGGAAAATTCAAGTAAGAGGAGTTCTggtttcttcaaacttttt
ttttaagagatTGAGTCTATCAATACCCAAACTTTGAAAGAAGGCACTCG
GTTGGATCATATATTGGACCGTATTGGTTAgagattttaattatttttcc
aattaatatttattttctacTACAATCAACAGTAATTTATTTGTATTCAA
TCTCAAACCTATTCTTTTTTCATAGTGACGATGATTCAATAACATCTTTG
ACAGAATTTCGAGTCCAGAAAATCACCCCAAGGAGTTCT Coding sequence (CDS) from alignment at sc0000450_pilon:115983..119271+ >XLOC_039898 ID=XLOC_039898|Name=XLOC_039898|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1494bp|location=Sequence derived from alignment at sc0000450_pilon:115983..119271+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCAACGACTTGGGGTAATGATGATCGGGCATCATTTTACACAACAAA
GCACTCTTGGCGTGGAAAATGGCAACGACTTGGGGTAATGATGATCGGGC
ATCATTTTACACAACAAAGCACTCTTGGCGTGGAAAGTATAAACGGGTTT
TCTCCATCGGCTCAAAAGCTATCACAACATACAACCCATCTACTCTTGAA
GTAACAAATCAAGTATAAACGGGTTTTCTCCATCGGCTCAAAAGCTATCA
CAACATACAACCCATCTACTCTTGAAGTAACAAATCAAtggGCCTACAAT
GACTTCTTCAGTATCAGTCCAAGTTCAAAAACACTCAATGAACTTATCAT
TGTTGTCCGTAAAGtggGCCTACAATGACTTCTTCAGTATCAGTCCAAGT
TCAAAAACACTCAATGAACTTATCATTGTTGTCCGTAAAGcaaaagaagG
CAAGAAAACAGTTTCAATGACGTTCTCCTCAGATCATAGAGCAGACCTTC
TCACCTATGCATTAcaaaagaagGCAAGAAAACAGTTTCAATGACGTTCT
CCTCAGATCATAGAGCAGACCTTCTCACCTATGCATTAaaaatgaGGACT
GCTTTTGCTGATCAGAAGCAATTGAAAGAGCTGaaaatgaGGACTGCTTT
TGCTGATCAGAAGCAATTGAAAGAGCTGAATTTCAATGCATTCAAACATC
ATTGGAGTGAAAACCGAATGCCAATCATCCTTAGAGTCACGCCATGCTCT
TTAGATCAAGTGGATCGCGCAACAAATAGAATTCTGTGTTCATACGATTA
CAAAGACATGGATGGGCTAGCTGAGAATTTCAATGCATTCAAACATCATT
GGAGTGAAAACCGAATGCCAATCATCCTTAGAGTCACGCCATGCTCTTTA
GATCAAGTGGATCGCGCAACAAATAGAATTCTGTGTTCATACGATTACAA
AGACATGGATGGGCTAGCTGAGgtATCCGATTACCCAGGAGGATTTGTTG
TTGTTCATGGTGGCTTCAATCGACTGgtATCCGATTACCCAGGAGGATTT
GTTGTTGTTCATGGTGGCTTCAATCGACTGcatttattttcttcggagtc
aaaagaagaaattatgaAGAAGGTTGTAGAGTTTGCATACAACCATATTG
GTATCAATATAAAcatttattttcttcggagtcaaaagaagaaattatga
AGAAGGTTGTAGAGTTTGCATACAACCATATTGGTATCAATATAAAaaaa
agaaaagaaccTATAGATTTCgattattttcaaacaagacGTCTTGGAAA
ATTCAAaaaaagaaaagaaccTATAGATTTCgattattttcaaacaagac
GTCTTGGAAAATTCAATGACGATGATTCAATAACATCTTTGACAGAATTT
CGAGTCCAGAAAATCACCCCAAGGAGTTCTTGACGATGATTCAATAACAT
CTTTGACAGAATTTCGAGTCCAGAAAATCACCCCAAGGAGTTCT
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000450_pilon | genome | sc0000450_pilon:115983..119271 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 685-747:3227 |
| Aaloc | 625-681:2960 |
| Aaloc | 541-621:2604 |
| Aaloc | 487-540:2290 |
| Aaloc | 340-486:1969 |
| Aaloc | 295-339:1674 |
| Aaloc | 223-294:1323 |
| Aaloc | 145-219:745 |
| Aaloc | 70-144:226 |
| Aaloc | 1-66:1 |
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