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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000023_pilon:1925146..1929666+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_039649 ID=XLOC_039649|Name=XLOC_039649|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4521bp|location=Sequence derived from alignment at sc0000023_pilon:1925146..1929666+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAGTCGTATCCACGAAGAAAGAAAGGATTTTTATAATAAACGAGAAGG
TGTGCTTACTACCTCACCAAGTATCAGAAACATAGCAACTCTTTCTCAAA
ATATGGATAAAGAGAAGAGTGAGAAAACTATATTCGGGCAGCAAAACTTT
GgtaagtttgatattttttctttcttgttagAGTAGACTTTAAAATCTGT
CTTTTTCAGTTTCGTCTTTTGACATGTTTTTCAGTATGTTTTGCGATTAT
TTTCGATCGAAGTTTTCTACATTTTATTGAATCAGAACTAAAACACTTTT
TCAAGGGTTTACTGTTAAAAATATGTAACTGACTTGAAAGGAGAAAGATA
TAAATCCAAAAATATTTGGTTTTTCTGCTCAGCCAACTTTTCAAAGTTCG
AGTGCGGTTCCCGGCACGGCTGCTCGGCTGAAACCAATCAAAATCGTCGA
CCATTATAAAATCGTATTTGAAACATCGAAGTGTTGTTTTGTTGAGTGTA
GATGATTACAAggctttaaaaataaattttgctttctttgactgctgttt
ttaaaaaaatgaagaattaaaACTTACTTGCTTGTCTAtttttttAGTTG
GTGAAGCTGGCTTTCGAACTGTAGACCTAATAAAGGtaagatatttttga
tttgCTTGATTCTGAGATCCATGTCTCTCATTTTACTTAACTGGAATTTT
GCGCTATATATTTTAATGATTTGCCTAACAGCTTTAAATTCAAATGGATT
TCAGGACTTAGACAAtcccttaaaaataaagatTGcttAAGGTTTGAGGG
AATAGggcttttcaatttttgtattttcagattttttattttctgattcT
TTACAAAGAATTTGTTAGGCAATACTATTTTTATTGAAGACTACCGTCAA
GGGCTCTAACTAGGAACAGTTGGTTTAAACATGGAATTCTAGTTCTAGTT
CCATTTAATTATCccaatATATTATCCATAaatgtcccaagttagagcca
tTGATGGTACCTTTAGAACTTCTATCAGCTGGGTAAAAtctgtgtgtttt
gtttttgatatgtATAAATAATCACTTGTGTTCTTTTAACGCCCCTTGAC
AGCTAGGCTAGACTTAACTCTTTGCACTTTCCTATTCCAATAACACAATG
CTTACAtactgtgagtggtcctaaaaccgacagccctgcctaaatccgac
cccccaaataactgctatgaaaaaaaattatgtgtttacaaacattccct
ctccaagttgaacaataaactatattgcaagaactctcgaaacaaaatat
ctaacaagatgactaaaatgtcaagatgtcaattaattaatgtgataaaa
aagtgtgagttgtaaaaataattatctctattattctgaatccattgctc
gtgtttaaaacgttaaaagttttgaaataaaaaattatgttttgtataag
aagcaattattgttatttggttaaattggttcagtgtatcaaatctctca
gtttagttgacactgtggtatcttcattgcgtcacagcgaaaggtttgtt
tttattttagtttgtatctttgaaagaccccatcggatttaggcagggct
gtcggacttaggaccactcacggtactgtAGTTGATACATAAAAcataag
aattattttttatgcaatgtttatatcaaaatctgcaataaaaacaAGAG
TGGTCTGTTATTAGTGGAAGAAGTCACTCCTTcggaaattcttttttaaa
tttcaaccaatgaaattGCTGCATATGATGAAGTAACGACTGGCCCTATT
TTTTGGTGCTAATGGCTTTTCGGTACGGTGCCTTGGATTATGAGCGGTCT
TAtaactttatttgtttcaacTGTTGATTCAGTCAGTGGAAGTAACTTGg
attttaagcatgttcaaagttcacagtaacaagtttctttttattacgga
aaccaaatgagtgagaacaagtcataaaacttAAAGTCAGCGCTTCGTGG
TCCATGGTTGTGACACAAAAATTGTTAATGagataaaatgacaaaacgaa
agcttcttcattttttatttttgcatttaatggggaagaatgaaattttc
aaaagatgctTCATTTGATATaatgaggattcccatttccatAAAATTGC
GATTCCCCAATGttggctatgggtaattcctttgttcttttgctattttc
ttttattCTATGTGATGTAAAGacgattctttctttttttatttcttcat
gttCGCCAATCTGAGGAGTACACGTAGGAAAGCTCATGAAACctgcaaac
ttaattttgagtttAGCCTTTTCCCAAGATTGGCAAACAATCCATGTTGA
CCACTTACAgcttttctctttgatcttttgttggttttttttgttaattt
cttgCATCATCAATGACttcttgaaatggaaacacACAGTTTTTACCAAG
TTGCCTATATAGGACAGCACATTCTCAAATCCGATGCCCTGAATGACTGC
CagtggaaaaaatttcaatgattacaAAATTCCctctcaaaatttaatga
taAACTATGGTTTTGACCTTTCTATTGTTGATATCCAGGCATTTATTCAG
ACCCTgggctaaaaatatttttcctaaaATAGGATttgagatgaaaaaaa
aattagcagaAAATAGTGACATAACTCACCAAATTCTTTAATTCTTTCTC
TTAGCAACCGGGCAGGAATATTGTACCTGCATCTTTGAGTGCAACTGGAG
CACAACTCCATGCGATGCCACATCTTGTTACTAATTACATGACAGTACCA
TTGAGTCAAGCCAGGGGTCAACACACCTTTCAAGCACACATTCCTGTAGG
AATCAGAGCAGCTACAGCTATTGCTCCCTCAAGAGCAAGTATTGCTACTC
AAAGGTTGCAAACATTAAAACCAACTAATATCACAAACCAGGTGAGGCTT
TTAAAGTATATCAATATAGACATATTGATTGTAAAGGCacagtttatttt
tttcttttgtttgcttTAAAACAATTTCAAGTGAACAATATATAaccttt
aaaataatcaaattcttACCTTAATAAGACTTCTACTGAATTGCTTATAC
tatctttttctaaatttcaaagacgatttcaaacatatttttattctttt
aattcAGATTCAACTACCATTGGCACCTCTTTCAAGTATTCCGATATTGC
CGCCATCAGTTGCAGCCAATAACCGTACAGGTTCTCCAACTGTGACCACC
CATGGTATGACATCAGAATCTCGACATGGATCTAGGACACATGATTCACA
CAGTGCTCTGCGTGGAAATATTCAAGCTACAAGCCAAACAGCAACCATTC
AAGTTGTTGCATCTGGAAATCAAGTTCATCTCCCAACATCGCTTTTGACT
ACAAAAAGCTCATCTTTCAATACAGCAGTGCCTAATATGTTGAAGATTGG
TGTCAGCTCTCATACAAATGCAGCTTCTGTAACTCCCTTACCAGCATCTG
GTTTCAAGCTTGCTGGGATTGGTAGGAGTTTTTTCGTTCGACTTAAATTT
GCTATTCTAAGACATGATGCACTTTTCAAACTATAAATGTTTGATTATCT
TGAGAGGAAACCAGCGCTTATGGTTTGACTCACTAAAAACATACAACTAA
TCTTTAAGTGAGTTAACTAAAGTGCTCTGTTTTCACCTGATTCTAGAGTT
ATGGAATGGCAaaggataaaaaaatatgtagatACCTTAAATCTCCTTAT
TTTAGGGAAAGCGTATCCTGGTGCATCCAGCGTTATCATACCGTCTGCAA
AGCCTGAAGTAAGTTAAAATGTTTATTATCTTATTACATTAACCAGTGAA
TAATGTTATATGTAAATGTACGTTAATGTATAATGTTGAATAATGGAAGT
ATTTACAATTTTACTTCTTTAGGAACATCGTGTTTCATCGTTCAGTCGGT
TCCCAAGTCCACATAGTGTCACAATACCTGCTCATCAGATACAAGGCTTG
CCTGTGACTACAACCATTGCAAATAGCCAAAGTCTCACTGTAACTACTTC
GACCGAAGCCAGGTaagattaaaaattttcttttttaattgtagCAATGG
GTCATGAAATGAAATAGTGCATGAACAGGGGACATCTAGCTCCCAGGGGT
TTTGAACTTGTACCTCCTAATAGCCCAAAATAAGATAATTACAAACTGAA
ACCTACCTCTGTAATTAGAGCAAAATAAAGAACTGTGCTTTTAACagctt
aaatattttcaaaaattaatatatGGGGGGTTTCCTATTCGGGTCCAtgg
ttggaaaaaattgaaaaataaacaagcagcAGAGGGCTTTTATTATTAGA
CATCTGCCAGCAGTTGTTTCAATAATCAAATTTGCTTAGAGGATTTGATA
GGTTTAAGCCATGCTTTATATCAACTCCCCAAATATACAAACCATGTTAG
ACCATATCTGTATTTTTGCTAACAGGTCCCATTCAAGCATCAGTGTGCCT
TATCAACAATTACCAACAGCC Coding sequence (CDS) from alignment at sc0000023_pilon:1925146..1929666+ >XLOC_039649 ID=XLOC_039649|Name=XLOC_039649|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2058bp|location=Sequence derived from alignment at sc0000023_pilon:1925146..1929666+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAGTCGTATCCACGAAGAAAGAAAGGATTTTTATAATAAACGAGAAGG
TGTGCTTACTACCTCACCAAGTATCAGAAACATAGCAACTCTTTCTCAAA
ATATGGATAAAGAGAAGAGTGAGAAAACTATATTCGGGCAGCAAAACTTT
GATGAGTCGTATCCACGAAGAAAGAAAGGATTTTTATAATAAACGAGAAG
GTGTGCTTACTACCTCACCAAGTATCAGAAACATAGCAACTCTTTCTCAA
AATATGGATAAAGAGAAGAGTGAGAAAACTATATTCGGGCAGCAAAACTT
TGTTGGTGAAGCTGGCTTTCGAACTGTAGACCTAATAAAGTTGGTGAAGC
TGGCTTTCGAACTGTAGACCTAATAAAGCAACCGGGCAGGAATATTGTAC
CTGCATCTTTGAGTGCAACTGGAGCACAACTCCATGCGATGCCACATCTT
GTTACTAATTACATGACAGTACCATTGAGTCAAGCCAGGGGTCAACACAC
CTTTCAAGCACACATTCCTGTAGGAATCAGAGCAGCTACAGCTATTGCTC
CCTCAAGAGCAAGTATTGCTACTCAAAGGTTGCAAACATTAAAACCAACT
AATATCACAAACCAGCAACCGGGCAGGAATATTGTACCTGCATCTTTGAG
TGCAACTGGAGCACAACTCCATGCGATGCCACATCTTGTTACTAATTACA
TGACAGTACCATTGAGTCAAGCCAGGGGTCAACACACCTTTCAAGCACAC
ATTCCTGTAGGAATCAGAGCAGCTACAGCTATTGCTCCCTCAAGAGCAAG
TATTGCTACTCAAAGGTTGCAAACATTAAAACCAACTAATATCACAAACC
AGATTCAACTACCATTGGCACCTCTTTCAAGTATTCCGATATTGCCGCCA
TCAGTTGCAGCCAATAACCGTACAGGTTCTCCAACTGTGACCACCCATGG
TATGACATCAGAATCTCGACATGGATCTAGGACACATGATTCACACAGTG
CTCTGCGTGGAAATATTCAAGCTACAAGCCAAACAGCAACCATTCAAGTT
GTTGCATCTGGAAATCAAGTTCATCTCCCAACATCGCTTTTGACTACAAA
AAGCTCATCTTTCAATACAGCAGTGCCTAATATGTTGAAGATTGGTGTCA
GCTCTCATACAAATGCAGCTTCTGTAACTCCCTTACCAGCATCTGGTTTC
AAGCTTGCTGGGATTGATTCAACTACCATTGGCACCTCTTTCAAGTATTC
CGATATTGCCGCCATCAGTTGCAGCCAATAACCGTACAGGTTCTCCAACT
GTGACCACCCATGGTATGACATCAGAATCTCGACATGGATCTAGGACACA
TGATTCACACAGTGCTCTGCGTGGAAATATTCAAGCTACAAGCCAAACAG
CAACCATTCAAGTTGTTGCATCTGGAAATCAAGTTCATCTCCCAACATCG
CTTTTGACTACAAAAAGCTCATCTTTCAATACAGCAGTGCCTAATATGTT
GAAGATTGGTGTCAGCTCTCATACAAATGCAGCTTCTGTAACTCCCTTAC
CAGCATCTGGTTTCAAGCTTGCTGGGATTGGGAAAGCGTATCCTGGTGCA
TCCAGCGTTATCATACCGTCTGCAAAGCCTGAAGGAAAGCGTATCCTGGT
GCATCCAGCGTTATCATACCGTCTGCAAAGCCTGAAGAACATCGTGTTTC
ATCGTTCAGTCGGTTCCCAAGTCCACATAGTGTCACAATACCTGCTCATC
AGATACAAGGCTTGCCTGTGACTACAACCATTGCAAATAGCCAAAGTCTC
ACTGTAACTACTTCGACCGAAGCCAGGAACATCGTGTTTCATCGTTCAGT
CGGTTCCCAAGTCCACATAGTGTCACAATACCTGCTCATCAGATACAAGG
CTTGCCTGTGACTACAACCATTGCAAATAGCCAAAGTCTCACTGTAACTA
CTTCGACCGAAGCCAGGTCCCATTCAAGCATCAGTGTGCCTTATCAACAA
TTACCAACAGCCGTCCCATTCAAGCATCAGTGTGCCTTATCAACAATTAC
CAACAGCC
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000023_pilon | genome | sc0000023_pilon:1925146..1929666 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 985-1029:4477 |
| Aaloc | 844-981:3923 |
| Aaloc | 793-843:3758 |
| Aaloc | 427-789:3158 |
| Aaloc | 190-426:2705 |
| Aaloc | 154-189:600 |
| Aaloc | 1-150:1 |
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