XLOC_039645 (mRNA) -

Overview


Name	XLOC_039645
Unique Name	XLOC_039645
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000023_pilon:1797442..1803744+
coding sequence from alignment at sc0000023_pilon:1797442..1803744+

mRNA from alignment at sc0000023_pilon:1797442..1803744+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_039645 ID=XLOC_039645|Name=XLOC_039645|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6303bp|location=Sequence derived from alignment at sc0000023_pilon:1797442..1803744+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGTTGACGCTGCGACTaaaaaaaCTGTAGCTGCTATTCCTCAACTCAA
AACTAAAGCTGGTCCTAGGGATGGAGATCAATGGGTTGTCAGATTAAAGG
AGGAGTATCAGTCACTGATTAAGGTATTagttatgaaatattttttcttt
tttggagaCATttatgtggctttcagccttgcactccattgcagaggcta
atcaattttaatgacttttttgactaatgaccaagttaaaaatgtttaat
ttttttatatttgagtattaaaaaggcatgcattcaaagaataaaggttt
gaaatttttctgttgGCTAgtttagtaaaatatctcaaataggctctgtg
atggagtgcagGACCCTGCCTGCCGATGCACCGGACTATCCGGTGTATTT
GTCTGATGgcaaaagtatcctttcgctacgctacaccggacgcagtaagt
ccggtgtcagtccagtgttgcatacagggaattttggacgccagacattt
tatgaaacaaaaaattaaaagaaacaccggacgcaccggactggtcgtgt
ccggtgttttgattgtccggtggaaaaaagtatccttctccgacaccgga
catccgacttcctttaGTCCTGTGTAGAGATTGTCGGgtggaaaaaaatt
ctcattttacaccggacttttgcGTGTCCGgctgtccggtgttcgttaag
tccggtgcgtcggcagggtccttggagtgcaaggctgaaagccacatgaa
tatggttcatcctataaaaggaattttattatatggtggcctatcttgaa
gtgaaggtggttgaacaaaatatttttggcatattgatggaactgtcagg
attagaaactaggctagtcctacattttttatctttccctttagcgttta
ggggtcactcacatatcgattcttccttCCCATggctaacgtcaaattga
cgctaattGGAAAACCCTCCCACCCCCACCTCTTAAcgtcaaagttttaa
aattatcaaaattagaaactctaaattttctcattttttcctTCACTTTC
ATTGTTGTTTTATCAGCCATCTTTTAATATTGCTACGGCTtgctcagttt
acattttaaaaataatggagataaataaaaataaataaataaaagactGA
CCGTCTGCAAAATTCAAGGGCCGCGCGGACCGTCTAAACAAATGGAACAc
aagacataaacatcgggccgttttttttggttaaaattgttctataaaat
GGCGAAGCGAACAAATGCTAAGgaagaaaagaaatatggaaagtaacatt
tgtcacaGAATAAATGTCTCAAAAATCGTTATTTGTGATAAAATTTCTTA
CCGTCACAGACTCTAACCCCCCACCCcttcgcgtcaatttgacgttagtc
gtgggaagaatcgatatgtgagtgaccccttacaacaatacaatactgac
aagttgacacaacacattgacaagtaatccctgactGAGAaaagtttata
tcgaaatctgcaacaaaaacaattaggtggtctcttctactgattgcttc
ttggtgctcctttgcagctgtttataaaatttccaccaatgaggtttcTG
CATTTCAaatggcccttctttttggcacccgtggcctctcagtgccttgc
acaacgggcggctgtaaaaatccacccttcatatatttgttttaATCCGT
GATtctaaggcttaggttttttcttatcttcaatttactgaagaaagcag
gaatttgatgcaagagttagattgtcaacaaagtgctgtaaaatatcatt
gaataaaagaagaactttaaatctttaatattttcattttgaagaattgg
tgcaaaaaagtgaaacatggaaaagtttcattttttattggtttaattGA
AATAGTGGATTTGGAAAACTTcccatgtttgtttttttgcacaattccCT
GTAACTACATATGGGCAAGCACCCGGTTGCTAAGATGTtagcttgaaatc
gaaagtgagaccgctgaaaacgaaagtaaaattggcccGTACTCGgaatc
ctgtaatcttgatatatgagtttaagtctatactggctatgcatgtttgc
gtccgctgatgcaagttacccgatctcacggtatccTCTCATTCCTGATT
TTCTTTTTGAGGTCCCAAAGAGAagaattttgattgaaatataccGTTTT
GCGAGAAAAGCGAAATACTAATGAAACGATTAttagagaaattaaaactt
tttacgaataatacttttgattttattatcaAATGTTCAACGAGAAAGGT
GAAATCTTTATTCCCTTTAAAAGACAAGAACCCCCGTACCCAGCCTGCAA
AATTTACCAAGGTGATTGTTCTTGTGGTCAAATATAAATTACATTGGTGA
AATTAAACGAAACGTCGCTACAAGAAAATGTCACTTTAAAATCAGAGCCT
GCAAAACATTTAAATTCCTACCCAAATCACAAATTCCAATGGAAAATTGT
CCTCAATGCCCCCCAAAGAATTGGAGAACTCTAGTGGATATGTTTCGAGT
AATTGAACTGGGGGCTGAACTgatattttaaatgatttttaattttcaat
aattttgtgCTTATGTGACAATGTATCACGTTTATTTTGTCAATAGGAAA
AACTTTATCTTATTTAGATGGCCttgtttattattttgtttaagaacttt
caagcaaaatattcttttattctCGGTTTCTTGGAAATTGGGTCTACATT
CTTATAATTTAGCTGGGGGCTATTTTCATTAACTTCTCCCCCTGAAAATC
GCTGGGGCTGGATCCCTCTGCATACTATCATTTAGTTTTGAAcgaaaaag
aacattttatgaTAATAGTTActgttttttattctttcagtACGTCAGTA
CAAATAAAGATCAAGACAATGATTGGTTTCGCTTGGAATCGAACAAAGAG
GGTACAAGGtgatatttctttatttagTAAAATTATTCTTTAATAAAAAA
GTGTTGATTGCCTTCATCTGAAACTAGGTTTTGAAAGGGAAACATTCGGT
CGATAGAAATATTCAATGATTATTATCAACTTCTTTGCCAAGAAAGTAAC
GATTTTGCAAGACAATTTTAGATCATTTTCTAAGATAATATCAAAATGGT
CCACTAGTACTAATAATTAATGATGACTTTTATGATTACTCAActtcttc
attatttttagaTGGTGGGGAAAATGTTGGCATATgcacaatcttttaaa
atatgAATTCGACATCGAATTTGATGTAAGTTATCATCTACTCTGTGTTT
TTGTCACTTAGAAAAAGGAAAGATATTTTATTAAATAAAGAGCCAATTTG
GTTGAATAGATTTGGAAATGCAAAGATTCATTTCAGCAGTataacctttt
tttataagaacatcccaaatttttgaagccttcggatgttcttaaacttT
ACTGACCTCAAAATTTACGATTTTATAAACTCTTACAATGAACACTTTCA
AGAATCGAGTATAAAACTTAACATAAACTGAATCTAAGATTAAGTGAATC
GGCTTGAAGCAGAAACTTACTTAAAGCTTCGTTTCTATAAGCTATACAGT
TGACTCGCTCTTGAACTTCAATGGACCAAAACTTTTCTTCGAACGACACA
AAGTTTCGAACTACATACAAAGAgtaatttggactttttcagaATGATTA
AAAGAAGTATTTAGAATATTTCAGTTCAAATTGACGAAAAATTCCAATAA
TAATAGACCTTCGAATTTGAGAGAACCTCTTTTCCATATCTGAAACTTta
tgttttgctttttctctCAATCTTAGATACCAATAACATACCCATCGACT
GCGCCAGAAATTGCAATTCCCGAGCTTGATGGAAAGACTGCTAAGATGTA
CAGGTATGAAaagatcttctttttttttgcattcatATTTTCGTAAGTAT
TGTTTGGTTAGAATTGGTTTACTTTAATTACCGCATTCACACTTTAATGG
TTATGTTTTAGGACCTCCCTTTATTAATAAacgttttggcgaaaatctCC
CAGTCAATTTTGGTTACTcatcaacaaaaatattctcTTACTCTTATTGT
GTGAAAACTAGATAGAATTTCGCATCGATTGACTGATGGATTTCaaaata
caattaaaaaaatatatgaaatgataaaaatctacgaaaaagggcgattt
ttcaaaaaattctaattttttctgaatttggcggaaatttaatccgccaa
attttgctaaaatttcgcCAAATTTTCTCCTAACTGAATCTATGCCAAAA
TTGATCCAGGTAATTGAACCGTACATTGTTACCTACATTGTATTTTGGGG
TCCTGACATAAATTTTGGAATCCTGACATAAATTTTGGAATGGGCATAAA
ATGCATTTTAATCGATGATTAAAACatcataaataaaacaaaagcaGCCT
ATGTTTAAAGTGGTCTTTTTGtggcaaagaaattttgtttttaacttttt
attttcttttttcaggggAGGCAAAATTTGCTTGACGGATCATTTTAAAC
CGTTGTGGTCAAGAAACGTTCCTAAGTTTGGCATCGCACATGCAATGGCA
CTCGGTGTAAGTAGTCATTAAGACATTTAGAATTTTCAGGTTCAGCAGAG
CCAccatacagtatatggcccccaaaacggagacggcccccaaaacggag
gttttcattaaaatgaagattctttTAGAtctatcagaattaaacgattt
ttgtttattttgaaagaatgatggttatacttaaaaatgagcgtgttttt
gctggtttgagactgattcaaaataacatatttgcgtctaaaggaaatat
tttaacaccaaaattagataaaaattgcatataactcactctagctcttt
ggatattgaaaataagttatgaaaacggggtataggaaactttctacacc
taatgccgttcagaaaatgcaaatacatctgtgactttagaggctgggta
aaagatatagcatcttgaaggtcaaccagtattttggagccctagaatca
gcattgacaaaaccgaaaattctaaacatgagaaaaagcaaaatatcttg
gaattctattcctatcaccttgagttaatagtttataacaaaaaattaac
attttataaaaaatttttcgctgaatcagcaaaaacggcaaattctgtca
tttttttgcaaaaatatatgagaaaaatatctttaaagcttaatattttc
agtttcagttaagctttttttctaaaattttcacagcttattccatacat
gaatggaactattttcaaaagagatttgttttcaaaaacttgattaagac
gttgttaaatcaaaattatcattcagtttggactttgcaatatcgaaaat
cttgaaatatttcataaaaatcataaattttacatccatcgggtcgtaaa
tttaagggaaaacacaaatatgttcatagtttctccccctattacctctg
ggcttaataatttgattttaactacaccaccgttttgggggccccagacc
tgcattttgacaaccaggggtatagggtaaaaattttatcaaataaatct
aTCCctaaaaccctctaaatcatatttcgaaactatggtcaaaattttgt
attcatatcttaaagatatctcgagaaatcgctaaaatttcaaacctccg
ttttgggggccattagaaaaaagctacctatctttaagcgattgaaaaat
attgttgaaattgaaaattttgaaaaagaacttccaggaaataaagaaga
gatgttaaaggttttcatgcagcaaagatttttgtaaaatctcttttcct
ctagatttgagagaaatttcaaatttgatcgccgttttgggggccacata
ctgtaactcgaacaatttttcATTCGCTTTATCTGTTCACGCTTTTTTCC
TCGTAACACTTTGGTTTTCACATGGAAGGAAAAAAGAATGCACGCTCAAA
GCGAATGGTCTTCAATAACTCTCGAATTTTCCATTTACATACGGAACAAA
GTTTTGTTACCCGGTACATGATGTTAACACCCTTCTAGGCTGTTGCATGG
AATCCCAAGATTTTTTCTCTAACTGTGCGACTAATTTCAGCAACatgttt
caaaaatcaaatatagACTTGTTGATGTATTgcttgaaatgtttttgaaa
tcttctttATTTTAAGCTCGGACCATGGTTGGCTGTCGAAATTCCTGATT
TGATCGAAAAAAGTTTAATTCTTCACAAAGACGACAAGAAAGAAAAGACA
TAG

Coding sequence (CDS) from alignment at sc0000023_pilon:1797442..1803744+

>XLOC_039645 ID=XLOC_039645|Name=XLOC_039645|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1020bp|location=Sequence derived from alignment at sc0000023_pilon:1797442..1803744+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGTTGACGCTGCGACTaaaaaaaCTGTAGCTGCTATTCCTCAACTCAA
AACTAAAGCTGGTCCTAGGGATGGAGATCAATGGGTTGTCAGATTAAAGG
AGGAGTATCAGTCACTGATTAAGATGGTTGACGCTGCGACTaaaaaaaCT
GTAGCTGCTATTCCTCAACTCAAAACTAAAGCTGGTCCTAGGGATGGAGA
TCAATGGGTTGTCAGATTAAAGGAGGAGTATCAGTCACTGATTAAGtACG
TCAGTACAAATAAAGATCAAGACAATGATTGGTTTCGCTTGGAATCGAAC
AAAGAGGGTACAAGtACGTCAGTACAAATAAAGATCAAGACAATGATTGG
TTTCGCTTGGAATCGAACAAAGAGGGTACAAGaTGGTGGGGAAAATGTTG
GCATATgcacaatcttttaaaatatgAATTCGACATCGAATTTGATaTGG
TGGGGAAAATGTTGGCATATgcacaatcttttaaaatatgAATTCGACAT
CGAATTTGATATACCAATAACATACCCATCGACTGCGCCAGAAATTGCAA
TTCCCGAGCTTGATGGAAAGACTGCTAAGATGTACAGATACCAATAACAT
ACCCATCGACTGCGCCAGAAATTGCAATTCCCGAGCTTGATGGAAAGACT
GCTAAGATGTACAGgggAGGCAAAATTTGCTTGACGGATCATTTTAAACC
GTTGTGGTCAAGAAACGTTCCTAAGTTTGGCATCGCACATGCAATGGCAC
TCGGTgggAGGCAAAATTTGCTTGACGGATCATTTTAAACCGTTGTGGTC
AAGAAACGTTCCTAAGTTTGGCATCGCACATGCAATGGCACTCGGTCTCG
GACCATGGTTGGCTGTCGAAATTCCTGATTTGATCGAAAAAAGTTTAATT
CTTCACAAAGACGACAAGAAAGAAAAGACATAGCTCGGACCATGGTTGGC
TGTCGAAATTCCTGATTTGATCGAAAAAAGTTTAATTCTTCACAAAGACG
ACAAGAAAGAAAAGACATAG

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_039645	XLOC_039645-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000023_pilon	genome	sc0000023_pilon:1797442..1803744 +

Properties


Property Name	Value
Aaloc	424-510:6217
Aaloc	334-423:4517
Aaloc	256-330:3827
Aaloc	193-255:3213
Aaloc	124-189:2891
Aaloc	1-123:1

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XLOC_039645 (mRNA) -