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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000014_pilon:344227..348040- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_039499 ID=XLOC_039499|Name=XLOC_039499|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3814bp|location=Sequence derived from alignment at sc0000014_pilon:344227..348040- (Clytia hemisphaerica_ch_hm2_pilon)
CAAAAAGATTACGAATCACTTCGACTGAACCACGAAGCTGAAATCTCTCG
TCTTCATGAAGAACACATCTTAGAAAAGAATAATACTCTCGTACAAACAC
AAAAAGATTACGACCTCAAATTGCAAGAAGGTTTGTTAGAATTCAGTTTT
TGTTGGAGAGGGAAAAGATTCGCAATATTCTATGTTCTGTTTGTTGATTT
GAAAAATATTGGTCTGTTTTCCTAGTTGAAAAATCCAAGTATTCATGATA
CCATTTACCCCAAGTTTGCCAATGTTTTGATTCTGAGAGTTGACGTCCTT
GCGTCCTTGAGTCATAATGTTAGTTTTAGTTCCGCGTATTAAACCAATAT
TTGAAAATTATGTAAACAGAAGAATTATGCGGTTTTCATAACGAATCTTG
AACAAGTCTATAATCTTTCAAATTGAAAGTTAAATTGGTTCGGTATCAGT
CACCAAGCTTCCTTCATGCAAAATGCTTTACGAAACATGTTCAAAATTTT
AACTTGGGGCGTATACATATTTCTTGAAGGTGTTCGTTCAAATTAGCATG
TTTTTTAATGAATTTTTATCATCGCATCTTTTCGTCGTATCAGAATCAAA
AACATATCGGGCACAGTTGACATGCTCATTCAATTTTGACATTCATCACA
GTTACTTTATTTTTGAAAACAGGAAATGGCTTTTTAATTGCCGTGCCATT
AATCATTCTAAGCATTTTACGAAATTCAATTTACATTATTTCGAAGTTCA
GTCTGACATATTGGTTAGCAACCATGGAAATTATTATTATGAAAAATATT
TTGATACTAATGTGAAATTTCGAAAGCCGTTCTGTAGCTTTTCTTTTAAA
AAATCTGAAAAGGTTTATAAGGTTAATTGCTATCGTTGAACATAAGAAAT
CGTATGAAATTTAGATACAACCTTACCAGTAAAAACTTTACCCCTGTCGA
ATTGTCCTTAAGTATTCCAAAAATTTCCAAAACCATACTTTTCTTGTTTA
TGTTTCCAAAACGAGAGCGATTTCTTAAGATTTCTATTTTGAAATACTTG
AATTGCTTCATATGCCTTGCACATACTTGTCATCCCTATTGAAGGGTCGA
TCAAGTACCTCACAAGATTTCTAAATAACCTGTTATCTGAAAGATGGGTA
TCATATTACTTTGTTATGTTATGTATATTACATTCAAGTTACATTCATCT
TATACATTTATTTTTGTTTTCACAGCTTGGGACAAACAAACTCGTCTAAC
AGAAGAACATCAAAACGAGGTCAGTGTTCACTTTGTTTTTTATAAGAACA
TCCAAAATTTTTGAAGCCTTCGGATGTTCTTAACTTTTTGAGTTTTAAGC
CTAAAAATGTTCTTGACATTTTTGCCATTTTTCTTAGAAATTTTAGAGTC
AGTAAAGCCTTAAAATGTTCTCAATATGCTCTTAAGATTTTGGCCATCGA
AGCCTTATGTTCTTATATAGTTTATTCTTATAAAAAATCGTGTATTTCTG
GAAGATAATTCATACCCCTCCTACCAATCTCTCTCTTTCTGGTCTAGCTT
ATCTCAAAATTAGATTAATGATTTTCATGAAAAGAGATTTTGATTCCATT
GTGATTACCTAGGCCGATTTTCTTTCGTTTTTTCGATAAGCTAAGCTTGT
TGATTTCACCTCCCAAATCTTTGCTGACTCGCCTTCTGAGAAGCTTGATT
TAAAATGAATTTTATAGAGAATTATTCTCACCGTATTTATTAAATTTTAA
TTTTAATTTTCTTTTTCTAACTGCAGCTCAAGAAACTCAAAGATGAACAC
AGAAAAACTCTTGAAAAATTACGTGAAGGTAAACCATTTTAATCTCCAAG
AAAACCCTATATTGAACTTCTATGCTCTCTTTCTCTCTCCAAGAATCTTT
TTTATACCAACTGATTCATTGAGTAACACCGGAAGAAAATTATGGCTTAT
ATCAAGAGATCTTTGCGTAAACTTTCAAGACAAGGTGAATAGAATGAAGA
TAGAACTTTACTTCTTTTGACAAAATCCATCGTTTTGTTAAAACTTGCCT
TATCGGTCCTTTTTACGCTGGAACTTTTACGCTGGCTCTTGCTTAGTGGC
GTTATTTTTTCGTTGCTGGCGTAGGGTAAGGGATTGGAATTGAATAAAAG
CCAGGCTAAAAATGGGAAAAATTGAGCTTTGGCGTTATAAGGGTCGGCGC
AAAAAGGGCCGATAAGGTATCGTTAAACGAGTCCCGAACGTCCCGAACCC
CTTCTAGTATTAAAGTCAACATTTTTATTGTATAAATTATTTTTTGATTG
AATCTTTCATAGAAAACAAAGAGAAGGAAGGGCGATTGAGCGTTGAGCCG
CCTCCAAGGTTGCAATCTCCTGGAGGGACACCTGTAAGTTATAATATATT
TTTATGGTTCCCTTTAGGAATATCTAAGGTTATGATTTTCGTGTTTTTCC
CCATTTTCTGAGTTTATTAGACCTCGTTTGTACTAAGTTAAGGGAAAATT
AGTATAGCTCTGAACCCAAGTGGCTGACATACTCCTTACCTTAGCTTTGC
TTTTTCTCAATAATGGGAATCCCATGAGGCAGGGTCGAAAAAAGAAAAAA
AATCAAGTTTCAACAGTTTGCCAATGAAAGGAAAACCTCTGCCGGAATTG
AAAAAAGAAAATATTTCTGTTGTCGATTTTTCAAGATTTTTCGACTTGTA
TTTCACTTAAACATTTCATTTTCACTTATTGATTTTCAACTTTTTTCAGC
TATATACTGATCGCTATGACAATATGCCGGAGGAGCTGAAAAGTTTGAAT
ATTGTTCTCGACATGAAGAATGAAGAATTGAAAAATCTTCGAACGCGAAA
CATGGAACTTGAACGAAAAGTAAGGCTGTTTCTTCACGTCACTATTCCTT
CTGACTGTATTTTCTTGAGTGTAATTTGAAATAAATCCTCTCTTTTTCTG
AATGGGAGTATTCAATTACACAGCATCTCGGGTTAGAATCCCCGCTCTTT
CCGTGTTCTGAGCCGGCTGTTGGTAGACCCCACGAAATTAATCGGAAAGC
TTTTTAAAATCACTGTACCGGGCTATCTTCTCAAAATATCGACTTTACCT
GACATGATCATAATCATAATTGTTTCTCTTGCATTTCTTAACTTTCAGCT
TGACAAACATTACGAGTTGGAGACTAAATACGATGCTTTAGCTCAAAAGA
ATCAATCCATGGCTGAAATGTTGAAACAAAAATCACTTACTGAAAGGTAT
ATGCTCATCATGTTACAGAATCTGATTATAACCTTCGTAGTTTAATTCCA
ATAAGATACTACCGGGACAATAGTTTTACAAAAAAACAACTAAGTGAAAA
CTAAGTGGAAAGGCAGAATTTTCAACTACCAGTTGCTGCATAACGAAAGT
TGATACATTTTTTTCCTTGTTCTGAATCATATTGTTTAGCATCTGTTCTT
GCGAGACAAGATCCTTCGAGGTTTTGAATCCTTTTTTCCGTATTTAAATT
TTTTTCTTGTTCTTTGAAGGCAATTATCCGTGGAACGTGAAAACCTTATG
GAGAAATTCGAAACTGAAAGTAAAAAGGTGTCACAATTATCAATGGAGAA
AGAACAATTAATTTGGCGAGCCTCTAATCCAGACTTGACTTATGGTTCAT
TAGCCCGTATCGATGATGAAGACGACGACGAGGCTAGAGACTCGCCGCCT
TCACCGCTCCGTTCGTCTGGCTCCTTTTCCGCTAGTTCGACACCCCGGCG
TCTGAAAACAAGTAAAGAAGCCGAAATCGCTAAAAAACTGAAACGCAGGA
GCATGAATTTCTAA Coding sequence (CDS) from alignment at sc0000014_pilon:344227..348040- >XLOC_039499 ID=XLOC_039499|Name=XLOC_039499|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1620bp|location=Sequence derived from alignment at sc0000014_pilon:344227..348040- (Clytia hemisphaerica_ch_hm2_pilon)
CAAAAAGATTACGAATCACTTCGACTGAACCACGAAGCTGAAATCTCTCG
TCTTCATGAAGAACACATCTTAGAAAAGAATAATACTCTCGTACAAACAC
AAAAAGATTACGACCTCAAATTGCAAGAAGCAAAAAGATTACGAATCACT
TCGACTGAACCACGAAGCTGAAATCTCTCGTCTTCATGAAGAACACATCT
TAGAAAAGAATAATACTCTCGTACAAACACAAAAAGATTACGACCTCAAA
TTGCAAGAAGCTTGGGACAAACAAACTCGTCTAACAGAAGAACATCAAAA
CGAGCTTGGGACAAACAAACTCGTCTAACAGAAGAACATCAAAACGAGCT
CAAGAAACTCAAAGATGAACACAGAAAAACTCTTGAAAAATTACGTGAAG
CTCAAGAAACTCAAAGATGAACACAGAAAAACTCTTGAAAAATTACGTGA
AGAAAACAAAGAGAAGGAAGGGCGATTGAGCGTTGAGCCGCCTCCAAGGT
TGCAATCTCCTGGAGGGACACCTAAAACAAAGAGAAGGAAGGGCGATTGA
GCGTTGAGCCGCCTCCAAGGTTGCAATCTCCTGGAGGGACACCTCTATAT
ACTGATCGCTATGACAATATGCCGGAGGAGCTGAAAAGTTTGAATATTGT
TCTCGACATGAAGAATGAAGAATTGAAAAATCTTCGAACGCGAAACATGG
AACTTGAACGAAAACTATATACTGATCGCTATGACAATATGCCGGAGGAG
CTGAAAAGTTTGAATATTGTTCTCGACATGAAGAATGAAGAATTGAAAAA
TCTTCGAACGCGAAACATGGAACTTGAACGAAAACTTGACAAACATTACG
AGTTGGAGACTAAATACGATGCTTTAGCTCAAAAGAATCAATCCATGGCT
GAAATGTTGAAACAAAAATCACTTACTGAAAGCTTGACAAACATTACGAG
TTGGAGACTAAATACGATGCTTTAGCTCAAAAGAATCAATCCATGGCTGA
AATGTTGAAACAAAAATCACTTACTGAAAGGCAATTATCCGTGGAACGTG
AAAACCTTATGGAGAAATTCGAAACTGAAAGTAAAAAGGTGTCACAATTA
TCAATGGAGAAAGAACAATTAATTTGGCGAGCCTCTAATCCAGACTTGAC
TTATGGTTCATTAGCCCGTATCGATGATGAAGACGACGACGAGGCTAGAG
ACTCGCCGCCTTCACCGCTCCGTTCGTCTGGCTCCTTTTCCGCTAGTTCG
ACACCCCGGCGTCTGAAAACAAGTAAAGAAGCCGAAATCGCTAAAAAACT
GAAACGCAGGAGCATGAATTTCTAAGCAATTATCCGTGGAACGTGAAAAC
CTTATGGAGAAATTCGAAACTGAAAGTAAAAAGGTGTCACAATTATCAAT
GGAGAAAGAACAATTAATTTGGCGAGCCTCTAATCCAGACTTGACTTATG
GTTCATTAGCCCGTATCGATGATGAAGACGACGACGAGGCTAGAGACTCG
CCGCCTTCACCGCTCCGTTCGTCTGGCTCCTTTTCCGCTAGTTCGACACC
CCGGCGTCTGAAAACAAGTAAAGAAGCCGAAATCGCTAAAAAACTGAAAC
GCAGGAGCATGAATTTCTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000014_pilon | genome | sc0000014_pilon:344227..348040 - |
Properties
| Property Name | Value |
|---|
| Aaloc | 1282-1575:295 |
| Aaloc | 1183-1278:667 |
| Aaloc | 1063-1182:1066 |
| Aaloc | 994-1062:1501 |
| Aaloc | 940-990:2039 |
| Aaloc | 898-939:2588 |
| Aaloc | 766-894:3815 |
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