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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000308_pilon:365567..371164+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_039480 ID=XLOC_039480|Name=XLOC_039480|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5598bp|location=Sequence derived from alignment at sc0000308_pilon:365567..371164+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAGCTCGTCAACAAATATCACTGCACGTATCGATGGAGTCTTCAGGAC
CCGTACCCCGGGCGTGGCCGCTACTGGTGTCCCTGATCAATATGCGGATG
GAAAAGCTGCCAGAATTTGGAAGAAATATGTAGGTGAACAGAAAAAGAGA
ACCACTTTCTACAAAGAGAAAGTTTGTGGCATTCTGAGAGAGTTTGATTG
TAAAAATGTCTTAGATGCAGCCACAGGCACTGGGTGAGTTtgtatttctt
caaattttaacacCCTAATAACACCCTTGACATACCTCTCATTTTAAAAG
TGGCTAAACGTCTCCCCAAGGAATTGAATAAGAgttttattaaagttcct
tgGTCTCCCATAGCACTTGCTAATACCagacttttattttttcttctact
ttctttccttttcccaccctatgctagagagtgtttttccttgcttttAT
ATAATTGATATGAATAGCTTCACCGAGTCTTTAAATTTAAACGTTCTCAA
TCGACAATATTGATCATTGTTGGCATTTCCTTGATGATTGATGATAGATT
GTTAGCcattattgggcttttccagaaatccGTGctcccctgttgaggat
atcggatatccagggggttgatgatttttgtttaaaagtggATATACAGG
CGgctaaatatctacaagggagcggatatccagggggtaaagtgtctttt
caagtaaaaaaatacgatatccaggggtaagcatctttataagagaggat
atccagggggtctttactaataaagtaggatatccagggggttccatact
tcgaaaaatcaatatcctcaacagtggggcaagttttttttctggaaaag
cccattgctaTCGACGATCATTCGCTTAAAACATCACCGACTGTTTAGTC
TCAGGTAACAGATACCAAATCCCTTTACACACTAGCTTAACTGACTTCAG
ATTTCCCTGAAAGTGTGTCCAGTTTATAAAGCCGACCAGTCCGCCATTCG
AACTTTCAGTTTCAGTATTCGAATCGCGACTAGAATGGAAAACAAGATGG
TTGATTAGTCAGCTTTAAAACTAACTGGGAAGCCCGATGCAGTCAACTAG
TTAATTAGTGATTCAGGTACAATCACTCCAttcccggtaggatttttcag
ccagttgggGTaataatacaatatacaatataatacaatgaatacaatat
tttgcagtgatttGATTATTTCCCGAGGGGAAAatttggagtataatttt
ccattggggatgatattttggttaatttttcaagtGGGAAGGAGTGTTAC
AGTGTGACCATGAAGTGGCAAAAAGTACATCAAACGCTCTATacacattt
ttggacctacctccggctaccccggtggaggttctataaattaacccatg
tccgttcgtccgtctgtctgttaccagcttttctcaatgttgactcatta
tttttttccgattttttgcacaatgatgcaaaatggcaatgcctaaaatg
tgtcggagcctgatttttgagaaaaaaaaacatttgggCAAAtctgggcc
aaaaactgcctaaaaatagggttttttggactttgtgtaaaaccctgtca
ttacttttttctgattttttgtacaaagatggagggcaagattctctaaa
gaatggctgaagtggtttttcccggaaaattcttattccgcttaaaaaac
ggattttcgtattttggggaaattccctttaaccaaaataagaaaatata
gcttttctcaatgttgactcataatttttttcttattttttgcacaatga
tgcaaaatggcaatgcccaaaatgtggcggtgccagatttttaaggaaaa
tttttttgggcctgaatgggttaagtgattttcgtatttggggaaattcc
tttttaccattttacattatttacacaagctttatttttccattctgaat
tattgtacaattattgtcactttttacttattttcatctgatgttaatca
ttaggtaggtccattcagcattttgcttgtttttatataagcaaccgagt
tgctaagggTCCAGCCCTGAGaatgggcaaaaaattaagCAACTTGGCTT
TAGCAATCTAGCCCTGAAATTTTAGCAaccaaaaatacttaaaaagaAGC
ATTTTTGGCATTATTTGGCATTAGCCATTAAAATGTGTACCGATGGTATt
tgaataccaaatttgatgtattttaaacataaaaatgagataaaaagcca
aaatttttgaagttttggcTCAAATTCCATAAGTaactttttggctgaaa
tccgGGAATTCCTTAGCAACATtggggttgcttataaaaaaattgtgtaa
ttCACTTTAGTCGTATGTATTCCATCTTTAGGGTTGATTCGATTATGCTG
TTAGAAGAAGGGTTTACAGTGACCAGCGTTGATGCTTCAGATAAAATGTT
GAAACAGGCGCTCAAGATTCGATGGGAAAGACGAAAAGAGGAAATTTACG
ACAAGTGGGGTAAATTAAATTTAAGGGCTTGATATGGGTGATACAGTTTT
GACGATGTCTATTTCAACGCTCTACTtgtcgatacgctccattattcgac
cATGAAGGCAACGCCAACGCCAAGGAGAAACTCTTATAAATGATAAACGA
CGCTCTGCTATTCGATACGCTCGCCTATTcgttgaaaatccaattcccct
tgaaaattaaatacacggatttcgaattagatttttgcGTAGCTTTTGCT
TTGAACCCATGTaattttcatgaaaagaaatcaaataaacATAAAACAGA
AAGTTGCCGTGCAACAAGCAGTTTTAGCTTATTCTTCCATTTTGGTATAC
TGTGCATACTCGTGTATTAGAGATCGTCAACTGGACTTGGTTGTTCAAAA
GTCGATTAGATTAAATACCGATTAGCACTAATCGCGATTAGATTTCGATT
AGTTGATTCCAACTATTAACTTCCATTGTTCGAACGCCAGATTAACTAAT
TGTGGAAGTTTTGCctctgttttcaaaaatcttaatcttgacgtcacttt
tcgaaTGTTGTCAAACATTGTATAGTTTGTATTTGTATATTTCACTTGAA
AGGAGTTGGGCTTAAGTTTACCTTACCAGGATTTGATGACGTCAAAAAGT
CTGGTTCTATTACTTGACGTACTCTAAAGTAAAGGAATTTTATATTATTC
CACCCTGGCAAACCCGAATCCAATCCTCCtccgacatccctcgtctaatt
tcGATGCCcttttttcaatgaataataAGAATGGCGGCaaaaggttgatt
ttttttctgaccgCTAATCAAAGAATTTGgcttcaatcagcgattccgac
cttcttattattcccaTTATCTCTAAAAAAGGATGTCGGGATTAGATGAG
GTATGTCGACTTTAGACCAACTTACTGTAGGGTTGTTACaagtttttctc
acttttttcatTTCTAGTAATTGAAGAAGGAAACTGGTTATCACTGAAAG
AATCAGCTATCGACATCCCAAACGATGGATTTGATGCAATCATCTGTATG
GGCAATTCTTTTGCTCATTTACCCGATTTCGACGGTGACCAATCAAGTCA
TCGGCATGCTATCGAGAATTTCTACGAATGTTTGCGACCAGGTGGTATTC
TAGTCATTGACCATCGAAATTATGATCATATTTGCGCAGGTGGTAAAGCA
CCCATGAAGAATATTTATTACTCGGTTAGACTGCACTTGtttttttCTCG
ACGCTTTTGATTTGATCGGGTCAGTCTTTCTTGTACAGTTGATGCTCtgt
tattcaattttcaagaggattagattttcttcgaataatggagcgtatcg
aatagaagAGCGTCGTCtaagagagtttcttgttgacggtgactttccaT
ATTCTCGAAAAATGGAGCGTATTGACTAGTAACACGTAACACAATACGTC
ATTTGCACTCATAtttttttCTCCCTCAGAGTGACAGTAAAGTGGACATC
AAAACATCCGTACTGATGGTGGATGGGAAATATCATATGGTCACTTTGGA
TTATACGGTTTATCCTGAGGATTATGAAGAAGGACAAAAAGTTGATGACA
AAAGTTTAAGGTTAGATACTGGAAAGTAATGGTTATAATATgtaaatggg
ctgttccatttaatttccatacaggggatggaagaagctttttcaagcca
aaaaaaatcttcaaaatttctagaaaatggaaaaatttgctTCAAACCAT
TCGAAAGATTTGTCTCGGGGTGGACCTTGAAGGGATTTCGGGATGAAAAA
TGAATCTTTGTCAAGGCATAGCTTTCATGAAAggcatttgaaaatttcaa
gtcaaagttGTCAACAGTGATTCTATCCCAAGATATTGTCATCCAATGTT
CCAAATTCTATAGACATCTGCACTCTGTGGAACTGATatagaaatgaaaa
tttgaaattggaaaacttCTGCTCATACCCAGCTAGCCACCAAACTAAAT
CATTGAGAGCGCAGGCTAGAAGGAGACCCTTAGTTGAACTAGATTATTTT
AGTATGATTGACCACTGGGCACATGACATTGGTAGGATTTGTATACCATT
AAAggtaatttgatttttgattaagTCCTCTAATCTTTACGTAATATGGA
TTAAGGATACCAGAAAGTTTGAActcaaactttgaaattatcttttcaat
atgACTTCCACAGAGTGCAGAGAATATTCGAGTGCAGATGTCTTGAATTT
GGAACTATGGATGTCAATATCTTAGGACGGAATTACTGTTGACAACTTCg
acttaaattttcaaaatgcttTTCACTATAGCTATTCATGGATTAAGTAT
AATCTTTTATGCAGGAATCCCTTTAAAGTGatggtggacgaactaaaatc
agtctttaacACCCTGGGATTTTAGAAATCACTTTTTACCttctggaaaa
atgaaaaaaaattcctcaGACATTTCTGGGAATATTTCTCGGacaacccc
ctggaaatgtttgcCAACCCCTTGTATGGATATagaatggaatagcccaa
tgtatcaaaaaaaaaaaaagtaaagagaCGTCTTTCTaaaaaaaCGCCTA
TAAAGAATCTCTCCATCAGAGCTCCAGTATCCAATACACATAAGCTATTC
TATATTCTTTTCAACTTATCTTACTGTTGTCTCGATTTTCAGCGGACTAA
TAtagttttcttcaaattagaaaaaaatttgaatcacTGGGGAGGGTTTC
ATGCGACTTCAGCTGAAGGGACCAATGTTTGAGTTCGAATTGAAGAGGGA
TTTGAAtgatagaggttcgaattagcgaCAGAGAGTGAGTAAGAGAGTTG
ACTATATTCATTTGGTATGAATATGTTTTTAGTTGTAGAACTGTTCAATT
GATTTAATTACTGaagtattttctttcattttcagtaaattCCGTTTATC
ATACTATCCGCATTTACTGaagaaattcaacaaacttTTGAAAGGAGTTT
TTGGTGAAGATTCCAATCATAGAATATTAGGTGACTTTGAACAATTGAAA
GAAGGTGATAATCCTGCTTACTACATACATGTCATTCAGAAGAAATGA Coding sequence (CDS) from alignment at sc0000308_pilon:365567..371164+ >XLOC_039480 ID=XLOC_039480|Name=XLOC_039480|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1824bp|location=Sequence derived from alignment at sc0000308_pilon:365567..371164+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAGCTCGTCAACAAATATCACTGCACGTATCGATGGAGTCTTCAGGAC
CCGTACCCCGGGCGTGGCCGCTACTGGTGTCCCTGATCAATATGCGGATG
GAAAAGCTGCCAGAATTTGGAAGAAATATGTAGGTGAACAGAAAAAGAGA
ACCACTTTCTACAAAGAGAAAGTTTGTGGCATTCTGAGAGAGTTTGATTG
TAAAAATGTCTTAGATGCAGCCACAGGCACTGGATGAGCTCGTCAACAAA
TATCACTGCACGTATCGATGGAGTCTTCAGGACCCGTACCCCGGGCGTGG
CCGCTACTGGTGTCCCTGATCAATATGCGGATGGAAAAGCTGCCAGAATT
TGGAAGAAATATGTAGGTGAACAGAAAAAGAGAACCACTTTCTACAAAGA
GAAAGTTTGTGGCATTCTGAGAGAGTTTGATTGTAAAAATGTCTTAGATG
CAGCCACAGGCACTGGGGTTGATTCGATTATGCTGTTAGAAGAAGGGTTT
ACAGTGACCAGCGTTGATGCTTCAGATAAAATGTTGAAACAGGCGCTCAA
GATTCGATGGGAAAGACGAAAAGAGGAAATTTACGACAAGTGGGGGTTGA
TTCGATTATGCTGTTAGAAGAAGGGTTTACAGTGACCAGCGTTGATGCTT
CAGATAAAATGTTGAAACAGGCGCTCAAGATTCGATGGGAAAGACGAAAA
GAGGAAATTTACGACAAGTGGGTAATTGAAGAAGGAAACTGGTTATCACT
GAAAGAATCAGCTATCGACATCCCAAACGATGGATTTGATGCAATCATCT
GTATGGGCAATTCTTTTGCTCATTTACCCGATTTCGACGGTGACCAATCA
AGTCATCGGCATGCTATCGAGAATTTCTACGAATGTTTGCGACCAGGTGG
TATTCTAGTCATTGACCATCGAAATTATGATCATATTTGCGCAGGTGGTA
AAGCACCCATGAAGAATATTTATTACTCGTAATTGAAGAAGGAAACTGGT
TATCACTGAAAGAATCAGCTATCGACATCCCAAACGATGGATTTGATGCA
ATCATCTGTATGGGCAATTCTTTTGCTCATTTACCCGATTTCGACGGTGA
CCAATCAAGTCATCGGCATGCTATCGAGAATTTCTACGAATGTTTGCGAC
CAGGTGGTATTCTAGTCATTGACCATCGAAATTATGATCATATTTGCGCA
GGTGGTAAAGCACCCATGAAGAATATTTATTACTCGAGTGACAGTAAAGT
GGACATCAAAACATCCGTACTGATGGTGGATGGGAAATATCATATGGTCA
CTTTGGATTATACGGTTTATCCTGAGGATTATGAAGAAGGACAAAAAGTT
GATGACAAAAGTTTAAGAGTGACAGTAAAGTGGACATCAAAACATCCGTA
CTGATGGTGGATGGGAAATATCATATGGTCACTTTGGATTATACGGTTTA
TCCTGAGGATTATGAAGAAGGACAAAAAGTTGATGACAAAAGTTTAAGta
aattCCGTTTATCATACTATCCGCATTTACTGaagaaattcaacaaactt
TTGAAAGGAGTTTTTGGTGAAGATTCCAATCATAGAATATTAGGTGACTT
TGAACAATTGAAAGAAGGTGATAATCCTGCTTACTACATACATGTCATTC
AGAAGAAATGAtaaattCCGTTTATCATACTATCCGCATTTACTGaagaa
attcaacaaacttTTGAAAGGAGTTTTTGGTGAAGATTCCAATCATAGAA
TATTAGGTGACTTTGAACAATTGAAAGAAGGTGATAATCCTGCTTACTAC
ATACATGTCATTCAGAAGAAATGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000308_pilon | genome | sc0000308_pilon:365567..371164 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 751-912:5437 |
| Aaloc | 619-747:3980 |
| Aaloc | 364-618:3470 |
| Aaloc | 235-360:2383 |
| Aaloc | 1-231:1 |
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