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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000068_pilon:116161..121271+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_039433 ID=XLOC_039433|Name=XLOC_039433|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5111bp|location=Sequence derived from alignment at sc0000068_pilon:116161..121271+ (Clytia hemisphaerica_ch_hm2_pilon)
AATGCattgtttcatcaaaacacGCCATGCGATGGAGGAGACAAAGAGAA
TGCTACAAGAGTAAAATATTTGCCAGGTTGGGAAGTTTTtgctttcttat
ttttttggtcaattctaaaaattcatgatatgcaccactgcaatgtcttc
taacattacgtcacagaaccaatagctcattggttggaagtgacgtaaaa
ttagtcaatacgtcactttcaaccaatcagctattgggtggaacggaaga
cattgcaatggtgcatatcatgaatatctgAGCGTCAAACATAATGTAAA
TTGTACCTACTGTACCATCGAATATCCTCTCCAAACACGTGTAAATCGTA
TCGAGGTTTTATAACTCTGTTATCACTAAAAAACATTCCTTCATTTATAG
ATTACTCAGCACATTACAACATTTtgaacatgaaaaatatcttacAAACC
ACTTTACCGGATGGTTCGAAAATATTACTGGTTTGTGATCCAAAGAGAGA
TTtgtaatttgaattttctttctcaGTTATTATACTTTATATCTATGCCT
TGAAGAGATACTACCATAGAAGGtagaagttttttcaaaagtaaaacccT
TGTTTTATACAAGAAGTAAAATCCTAATAACAGCAGATCAAGCAAAGATC
AGTTTCAAATTATTAAAATGGGAATCAGACCTAAAATACCTTAGTTTCGC
CCTACAAATAAAATAGTATTAGAACAAAATTCTAGTCTCAAAGTGCCAGC
AAGTAAGAACAGCCCCATAAAATTTTTTCTGGTTCTTATGTATAATAAAG
AGAGGGTCAGAATAAGAATGAGAATGCCCTGGGTGTTAAGTGAAACTCAT
ACATAAGGATCAGCCAGCGGGCCAATATGAAACGACAATGTTCCCCGAgc
cgtgggggggggggggcactcaaggtaaatctTCTACCATaagtgcggcc
cttaagggtatattttccaaagcttcccaaagtgcactgtaagggtcgaa
atcagcaaagatgagaagTATTGctctctaagggtgtaaaatttcgaaaa
tcggaccatattttgcctgaaaatggtcaaaaatcttCAAGAAAATACAC
CTTGAGGGTCGAATTTTCGCTCAAATTTgcgcaaatttcaaaattttctc
tgcactgtaagggtccgatttcaaaggcctaattttggccGCATGTATGG
TCGTTTTTGATTGAGTGTCCAATCCCCTCCCCCAGGGCCCCAAAGATTCT
TAGGATTTTAAACAGAAAACAATTCTGATCTAATCTCCTGTCTACTTACA
CTTTTAATCACCATTCAGGAAAAAGGTATCAAATTGTCATTTTACCTCGG
ATAATGGACAACATTGGAAAGGTATATCAATTTTGTTGTATTTGAAAAGC
TTTCTTCTCGTACCATGCTTGATATCCAGAGTGGACAAAAAGGATATGGC
CAGACAAAGATTATGCTAATTACAGAGCAATTTGTGCCACAGAAGTTCTA
TTTCTCTTTTGTTAGTTGCGCTGGAAACATCGTCATAtgaaggatttatt
atacactggatatacaagtacctgatttttgctaatttctcatgttctag
ctatgtccgcagtaatgatattattgttcactctccttccctcattaaat
gatttttcgataCATTTTAATTGCGTTTTATATCAAAAGTCACTCATcta
attcccaaaagagacttaaaactttcccgtgagagtcagattcttctatt
taattgccaattataagttgttatgacgtttcaagttgtgAGAAAGGTCa
aatcaacgatgtaaaaataatagataaccaactacctctagaaggcactt
ctcccaagagaacaaccattgttttcctattgaaatgagcactcctttaa
atagctctgtgtgcagtgcgtgttatgcttttagctagattttgacacac
tttttgacatccactgaattgattgaaaatttgaagtgttatttactgca
aattttggaatttttttcaaaagatgaaggtatcaatctttagacaaatt
gactacggatcggcctgataccacttaatcttcatctggataaataaacg
ctcataaaatgatgttatctgaaaaatatatgtgtgatttgaagtgcgat
atctcacgaatgaaaagtgtatgaaggttgcctgatacaaaataaacaga
tgaatatttatagaacaataatatctaattaaaaaattccttctgtgagg
ctgcctataggaaaatacactttttctaacccaaattttggaaaaatata
catcacgtgatcgattctgtccaatagaaggttgcaaatgaagcaagttt
ttatttaattgcactttttacggtgcaaaatgtcattaatatttttacaa
ccataacacggatgttttttgagaatcaaggcaagttgtctatctattat
ttttacatcgttggtcaAATAGATGtattgtgtataagaaattgaatgtt
gacaccggaaattttcaaactttaaccacaaaaaaaccaccttgccacca
cgtgcctccaaaagattttcataccacagtgacaCCAAGAAGCTCAAGTC
TAATGTTTGCTACTTTTAGCTCTTGTGGTAacagttttggaaagatattc
ccaattgaaTATCTCGTgttactataagcattttgtttgatttttcttgt
ctaatgatgtttttctcacattagatttcacaaatgtatccggcttggta
ttctagccttactttcaaagttttttccctTCAAAGATACGAAAAGAAAa
cgctagagaactttttttaaatgagatacATTTCAGCCGTCATGACAGTT
TTCctttgcggacatagctagaacatcaattgttttctgaaacaaagaaa
atacaatggtcgctctccaccgttttatgagtCATTTATCTAGTGTCTCT
TATAATTCCTTGGTCATATAAGCACTCTCACTAGATACTCTTCTCATGTC
AGACACACAATGCATTCCACAAAAatgtactctgtaccagagtgtatctc
acgttttcACAAAGTACAATAGCAGCACTTCTCCAGTTGCTGcgttgaag
tttttataagatgttcacataattggttattcaaaacaaaagagatcacg
cgttctttagaaaaatataataaaagtttttgtttgaatagttaacgacc
gatccaatgacaaaaattcttgtaaaatgttcatCTTGACCCCaccttct
ctcatcgtctcccctctctcaccaacactctaTCGCAGCGGCCagatctc
aaatgagaaaagacaatgacaacagaccctctacggcaatgaattttaaa
attagccGTAGACACAGACAAACAAAAATGAGGCTGTCATCAGTCTTTCA
ATGTTTGAGACATTTCATTTATTGTCTATAAAAATCTTCAGATACTTAAT
AAGAGACAACGTCATTCCCTAACCTTCAAAACGAACGATTTGTAATTTAT
TAACATTTGGCTGAGGAATGTATTTTCGGAAACCCCTTAATACCgaaatt
ttattacatgttgTTCATTTCTTATCCTTCTCAGGGCTATCTCCATCAGT
CAGTCAAATCAAATTCTACATGCCAACTGAAGATCTATTTTACGGTTATT
GCAACGAAGCCAAATACCGTTGTTCTTGGAATTTACTATTAAATAGAGTC
TCGTATTTGGACGAGGCAGCATACAATGAGAAACTATCAGACTTAAATAT
GGTGTCTGCAACGAATTTGGACGATATGTCATTAATGATCGGTACATCCG
CTTCAAGCGAAGATGACACGATAGGATGTAAGAAGGtttttttAAACGAA
CAAAAATGAGTCCGAAATTCCTCATTCGTCATCCTCATTCCTTGAAAAAG
TACTTCCTTTAACGAGATAACTTTTCGCGGGCTTAAACTTTGCGGATTTc
gtggatttgggtgtcataCGCAAAATTAAGCCCCATCGGGAATTTGGAAA
GGGCCTCTCCgtaaaattaaatccccgctaaaaaagggtttttttttgca
attctatttttatcctttttttaatttttgtttaccTGAAGGCACGCAAC
ACtcgaaataaattatttttataatttgactGGGGAAAAAGTTTTGTTAG
TTTCTCATCCCATTCCATTTAAAGGTTTCGGCTCTTAACAAAAATCTTAA
TTTCTacccatccgcgaaattaaattcccacgaGATCTTAAAAATtccgc
ggatgagctcaaccgcgaaaatttatctATTTCTTTGAGTATCAAGGAAC
CAAGATgtctttttttggacttgtttttgttttatttatctaaaatcgtc
ggcttttagaggttttcttctttttgcaaCCCTGTCTTTTCTATCTTCAT
CATAATCCGTAGGGATTTTAAAGACTTAATGTCAACCAATAATATCCTAC
TGGGTCTTCGACACAGGCTTAAATGACACGACTCCTTATTTTTCTTAACA
ACCTTTTCAATATCAATGTTTTATTTACTAAAGTTAGTCTTGCTCTTCTT
GAAAAATACCATCCGTATTTGTGAACCTATTGGAATTCAAGTGCGGTGAA
GTGGTTCATCATTACCCTTTAAATAGAGCTGAAAGCGAGTTTGTTCTATT
GCGAACAAAACGCAGGCCTAACCCGCAAAATCGTGGGCGGTAAAAGTGCT
AATTTGCtatcgtcctcagtcagtcaggatctagacaaatgaAGGACTTA
GCAGtaaatgcctcacaataggtttgCTGATATTTACGTTCATAGTCCAA
TATTATAAGACTCTTAAACTGGGTCCCGTTGGTGGGCTAAGGGGAAATTC
AAAACTGGAATCCCTGGTGCATTGCCTTAGACCAGTAAACTctttaccca
gctggcacacaacgttgtttcaacatttatctaatgttcacaacgtccat
ataatgttagatgaacgttgaaataacgttgtgtgccagatggGTGAACA
TTACTTCACTGActacatttctttttttaatgtttttcagtATCCGCGCA
TGGAATCTCCACACTTGAATCTGGGAACGTTTGGGCAAAAGTCTATATTT
GGACGAACTGA Coding sequence (CDS) from alignment at sc0000068_pilon:116161..121271+ >XLOC_039433 ID=XLOC_039433|Name=XLOC_039433|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1092bp|location=Sequence derived from alignment at sc0000068_pilon:116161..121271+ (Clytia hemisphaerica_ch_hm2_pilon)
AATGCattgtttcatcaaaacacGCCATGCGATGGAGGAGACAAAGAGAA
TGCTACAAGAGTAAAATATTTGCCAGAATGCattgtttcatcaaaacacG
CCATGCGATGGAGGAGACAAAGAGAATGCTACAAGAGTAAAATATTTGCC
AGATTACTCAGCACATTACAACATTTtgaacatgaaaaatatcttacAAA
CCACTTTACCGGATGGTTCGAAAATATTACTGGTTTGTGATCCAAAGAGA
GATTtATTACTCAGCACATTACAACATTTtgaacatgaaaaatatcttac
AAACCACTTTACCGGATGGTTCGAAAATATTACTGGTTTGTGATCCAAAG
AGAGATTtGAAAAAGGTATCAAATTGTCATTTTACCTCGGATAATGGACA
ACATTGGAAAGGAAAAAGGTATCAAATTGTCATTTTACCTCGGATAATGG
ACAACATTGGAAAGGGCTATCTCCATCAGTCAGTCAAATCAAATTCTACA
TGCCAACTGAAGATCTATTTTACGGTTATTGCAACGAAGCCAAATACCGT
TGTTCTTGGAATTTACTATTAAATAGAGTCTCGTATTTGGACGAGGCAGC
ATACAATGAGAAACTATCAGACTTAAATATGGTGTCTGCAACGAATTTGG
ACGATATGTCATTAATGATCGGTACATCCGCTTCAAGCGAAGATGACACG
ATAGGATGGCTATCTCCATCAGTCAGTCAAATCAAATTCTACATGCCAAC
TGAAGATCTATTTTACGGTTATTGCAACGAAGCCAAATACCGTTGTTCTT
GGAATTTACTATTAAATAGAGTCTCGTATTTGGACGAGGCAGCATACAAT
GAGAAACTATCAGACTTAAATATGGTGTCTGCAACGAATTTGGACGATAT
GTCATTAATGATCGGTACATCCGCTTCAAGCGAAGATGACACGATAGGAT
tATCCGCGCATGGAATCTCCACACTTGAATCTGGGAACGTTTGGGCAAAA
GTCTATATTTGGACGAACTGAtATCCGCGCATGGAATCTCCACACTTGAA
TCTGGGAACGTTTGGGCAAAAGTCTATATTTGGACGAACTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000068_pilon | genome | sc0000068_pilon:116161..121271 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 478-546:5043 |
| Aaloc | 235-474:3587 |
| Aaloc | 181-231:1320 |
| Aaloc | 79-177:403 |
| Aaloc | 1-75:1 |
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