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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000068_pilon:29212..33329+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_039431 ID=XLOC_039431|Name=XLOC_039431|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4118bp|location=Sequence derived from alignment at sc0000068_pilon:29212..33329+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTCAGCTTTAGTGACGATTCTGAAAGTGATGACGAAGAATGGGGAGG
TAGCAACGTTACTGATATTGATGATGATTTCCGGTCAATTTCAAGACCGt
cagaaagtgaaagtgaaagtgaattaGAGCAAGATGAAAACGAAATTGAA
AGCCATTTTGTAAGTAGCCGTTCTTTTTCTAACTTGGTGCTTTTCAAGGG
GAGGGGGAGCTTAGACTAGACTCTACTTCTGGTGGAATTTggtttttggt
aatttttgataACGTCGAGTTCCCTGAAGTACACTAGAAGGACTTGGCGA
GGTCTCAATTATGAAAGGAAAATACCCAGAATTCCAgataacaaaagatt
ttcttggaattgaaaatataattctaacatgaataacagatttgcaatcc
cttattttcaaaaacaaatatcGCAGATTACCatatatactaccgggcca
cttgatcgcgccatccagtccaAGTGGACTCAGggttataaaaattaaaa
tgggcAATTTGACATTCTGGGGTTTGTGGATGAAAAACTTGATAATATCG
CATGAAAGGTTGGGCTTTGCCCTAATGGAGTTGGTTCTTTTGTGCCTCCA
CGACAGCCGATCTTCATGGAAAAAAGAACCCTTTTATTCTTCACTCATAT
CACGGGAAATTTGAGTGGCAGTGAATTTGTTTGCGCTTTTTATATACCAA
TTATACCTAAACCAAAAAATGCATAGCAGGACTGGCTCCGGCCTATCCTT
TTTATGACGAAAGTTATTGATTTCTATCACGCTTGGAATATTTATTATAT
ACTCGTGTTGTCGCACCTTCCGGACAGGAGGTGGGAGCAATGTGACCATG
AGAGATTAAGATGAATTTTCCAATgtttaattttctttactttacttCCT
CAGAATGATCCACGAGGATTACTGCTTTCTATCAAAGAAGAATTTCACAT
TTCAAAGGTATCCAACGAAAGCGCCAAAATGAAACCAGATTTTGTCACTC
TGTTGAGAGAGGTATGTGTAGAATCCGCTCTTATAGTTCTCTTATAGACA
TGTTTTATAGCACTGGCCACCTCGCTACCTGCGAATGAGCTTTCGAAAGG
TcgcaaagaaaacaaaactttgCACAAACTCTATCTGGTTTGTTttcgtt
ttaaatttttttttgacaaaaccaGCGTTTAGACTGAATGTCTTTTTACC
AGATCAATGCAAGTCgcacaaaatattttgggatatTGTTAGAAGAAAAG
TATGATTCAAAGTCCGATTCAAAGTCCCTCAAGGATGGTTTTAAATCATT
GAGACATGGAGACCAAACAATAGTACAACATTTGGAACATGCAAACCAAT
CATTATCTGGGGATGAAAGATATTCGTTTTATGTGGTGAAATATGAACTC
AAACACCCTGGCGGTATCGAGCGTatgtattttaatattttcttctcAAA
TTGGAGTTTGCACATAAGGTTTCATTTGTTTCTCAAAGTTGTTCTGAAAA
CGTGAGAATTTCTGTCTATCTGTCTTTCTGTTAGTTCGGCTTTATTgttc
aaaacttttcatttttgcttttgatgattttcgTGAGCTTCTTTTGTAAA
TTAAGAATCCCAAGAGCGTCATAATTTTCGACCGACCTCAAATTATCTGC
TTTGTTTGGAATAAATTCTATTGATTTTAGGCTACAAACAAAAACTTCTG
CTGGGAGACTCGCACGGTTTGTCTGATTCAACCAAACAGTGCAATTTTTC
TGGTATTTGTCTCGGCATGAATGACGTCATCGTGATGTCAGAGGGAGAAT
TTGAAGATGCGTACATTAATGAGGATGAAAAGGAAGAAAtaagaaacaga
aaattttaCAACGACAGTATTAGCAgtagtgaagaagaaaaagaagaaga
tttcGTCTCAAGATGTCTTATACTTGCTGTTCCTTTCAATCGTCATTTCG
AATCATTTTGCTATTCAAAATCACCATCACAATGTCTTCAATATTTAGCG
AATGAAGTTGACAAGGCATCACCACAGTTCAAAGTTCACCTGAAAGAACT
ATTTGACAGGTTCTCATTGAAAGCATTTAGATGCCTTACTAAACATTACA
AACAATTATTGATCGAACTTGTTACTAAGACCAAAGATGTGAAAACTGTC
TCTTTGTACATTAACAAAATCATGGCACACAAGTTAAACTTTTCAGAGCA
GATGCATGGTATCCCTGATAAAACTAAGGAGAAAATTGCAGAAATGTTCC
AATCTGTTCCTTGGGAGAAAATCAAAGATATTGTTTTGAATGTGATCGAA
AATGTTGGGTTCTGGCAGTATAAAAGATGGATGGTAGTGTTTGACCAATC
AGCAATCATTGATATTGCTCATAGAATTATcgatttgagttttcaaaaac
ttcaattttgcaATGGTGGGCAAGCTTGTTCTCATTCGCTATgggaaaaa
atctttcaaagtgTTCGTGATCATGAGGAATTATGGAGACAATGGAGAGA
TGATATCTTGCAGTGTCAGCATTtcacatcaaattttgaaattgtttctt
CGATGTGTGATATATTGTTGTTCGATAAACCATCCAAATTGTCTTCCGTT
TTTAACAGCTTTGTGAAATGCGCCAAGAAAGAAGTCGAGCAACAAATGAA
ACGAAAAAGAGAAACATCATCAGAATGCCCAACTCTCATTTTACAATCAT
TTTACTATTGCAACCAAGACGAGTTGATGATTCCATTAATTGTTTCTGTT
GTCAAGCACACTCTGCGAAATCATCTCatctatttaaaagaattaATAGA
TTTGTTCGACTTTCTTTTTTCTGAGGAATATTTTGTTATTGGTATGAATG
TACTAAGTGGGTTATCCAAAGAGCAATGTAGTCAAACAGATGATTTCAAG
ACGATAGTCGACATTTATCTTACTCAACTTTTTAACAAAGCGTCGATTTA
TAAATATGTAAATGAAAAAGCTATTTTGGCTGAAATCCTTCTTAGAGGAA
ATAGAGGAAACGTCGCTTCAAACATAGACAAGTATGTAGATCTTTGTCGG
GAAGGTAACGAAAAACCTGATGCCATTTGCAAGATCATCTTTGAGCTTTT
ggatatttcaatgaaaaacacAGAGTTGAGTTGTATAACTTTGATTGAAA
ACTTATTCGACTTATTTATTAGTTTGTTGTCAAACCattacacaacgttg
tttcaggAACTAACTATCAAGTTGTTCAGTGCAGGAGACTCGTTTGCTTC
AAAATTGgagaaaatgttttcgaattttaattttatgtaccaaatcaaaa
aaagggtggacttttttataagagaccTCATGTATAAAGAGCATCCCAGA
ACAGAGACTTTCAAGAAATTACTGGAATGTATTTTGAAGGTTGTTCAAGA
AATACTAGACGGTGGTAATCGTGAACCTCATTTTATAATATCGACCTTGT
TACCATTTCTCCAaggaatttacaaaaatacttaTCACAAAGAACTAGTA
ATAGACTTCATCTCGTTAGAGAAATTTAATATCAATAGCGAGCAATATTA
TGCCAACTCTCAAAGTCGAGCATTTattaaaagtttgatttctgaATTCG
ATAGGAATTTGATCAAAACTGATTTCTATGCTGAACTTTTGAATGTTCAt
ttgaaaagtttaaagtgCATACAAGAGAAAGGTTGCCCTAAGTTTAATTG
GCGacaagaaaatgcaaaaattccCGATCACCCATACGTagagatttttc
tcaaaagcGATCTTGTGACTTTTGTATACAGACATttcaataatattgaa
aatgCTAAAGGCTGGTTACAAAATTACGCAAGAACGATTGATTACAGTGG
TTACTGGCGACAACAAAATTACCGTTTTACTGGCATTGCTAGAGAAAATC
AAGGTGTAGTGGAAGTGGTTTTACAAAAAGGAAGAGGTGTTTACAAAATA
ATCcaggaaaaatatttcaacttgGCGTCATTGATTGAACAGCTTGAAGT
GAAATTACGAAATTTTCCTCGTATTCATTCCAAACTTCGTTCGTTGAAAA
GACCTTTGAAAATTAAGGATGACGAATCCCCAATTCCAAGGAAAGCCCAA
ACAATCCGTGAAGAGTAA Coding sequence (CDS) from alignment at sc0000068_pilon:29212..33329+ >XLOC_039431 ID=XLOC_039431|Name=XLOC_039431|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5850bp|location=Sequence derived from alignment at sc0000068_pilon:29212..33329+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTCAGCTTTAGTGACGATTCTGAAAGTGATGACGAAGAATGGGGAGG
TAGCAACGTTACTGATATTGATGATGATTTCCGGTCAATTTCAAGACCGt
cagaaagtgaaagtgaaagtgaattaGAGCAAGATGAAAACGAAATTGAA
AGCCATTTTATGTTCAGCTTTAGTGACGATTCTGAAAGTGATGACGAAGA
ATGGGGAGGTAGCAACGTTACTGATATTGATGATGATTTCCGGTCAATTT
CAAGACCGtcagaaagtgaaagtgaaagtgaattaGAGCAAGATGAAAAC
GAAATTGAAAGCCATTTTAATGATCCACGAGGATTACTGCTTTCTATCAA
AGAAGAATTTCACATTTCAAAGGTATCCAACGAAAGCGCCAAAATGAAAC
CAGATTTTGTCACTCTGTTGAGAGAGAATGATCCACGAGGATTACTGCTT
TCTATCAAAGAAGAATTTCACATTTCAAAGGTATCCAACGAAAGCGCCAA
AATGAAACCAGATTTTGTCACTCTGTTGAGAGAGATCAATGCAAGTCgca
caaaatattttgggatatTGTTAGAAGAAAAGTATGATTCAAAGTCCGAT
TCAAAGTCCCTCAAGGATGGTTTTAAATCATTGAGACATGGAGACCAAAC
AATAGTACAACATTTGGAACATGCAAACCAATCATTATCTGGGGATGAAA
GATATTCGTTTTATGTGGTGAAATATGAACTCAAACACCCTGGCGGTATC
GAGCATCAATGCAAGTCgcacaaaatattttgggatatTGTTAGAAGAAA
AGTATGATTCAAAGTCCGATTCAAAGTCCCTCAAGGATGGTTTTAAATCA
TTGAGACATGGAGACCAAACAATAGTACAACATTTGGAACATGCAAACCA
ATCATTATCTGGGGATGAAAGATATTCGTTTTATGTGGTGAAATATGAAC
TCAAACACCCTGGCGGTATCGAGCGCTACAAACAAAAACTTCTGCTGGGA
GACTCGCACGGTTTGTCTGATTCAACCAAACAGTGCAATTTTTCTGGTAT
TTGTCTCGGCATGAATGACGTCATCGTGATGTCAGAGGGAGAATTTGAAG
ATGCGTACATTAATGAGGATGAAAAGGAAGAAAtaagaaacagaaaattt
taCAACGACAGTATTAGCAgtagtgaagaagaaaaagaagaagatttcGT
CTCAAGATGTCTTATACTTGCTGTTCCTTTCAATCGTCATTTCGAATCAT
TTTGCTATTCAAAATCACCATCACAATGTCTTCAATATTTAGCGAATGAA
GTTGACAAGGCATCACCACAGTTCAAAGTTCACCTGAAAGAACTATTTGA
CAGGTTCTCATTGAAAGCATTTAGATGCCTTACTAAACATTACAAACAAT
TATTGATCGAACTTGTTACTAAGACCAAAGATGTGAAAACTGTCTCTTTG
TACATTAACAAAATCATGGCACACAAGTTAAACTTTTCAGAGCAGATGCA
TGGTATCCCTGATAAAACTAAGGAGAAAATTGCAGAAATGTTCCAATCTG
TTCCTTGGGAGAAAATCAAAGATATTGTTTTGAATGTGATCGAAAATGTT
GGGTTCTGGCAGTATAAAAGATGGATGGTAGTGTTTGACCAATCAGCAAT
CATTGATATTGCTCATAGAATTATcgatttgagttttcaaaaacttcaat
tttgcaATGGTGGGCAAGCTTGTTCTCATTCGCTATgggaaaaaatcttt
caaagtgTTCGTGATCATGAGGAATTATGGAGACAATGGAGAGATGATAT
CTTGCAGTGTCAGCATTtcacatcaaattttgaaattgtttcttCGATGT
GTGATATATTGTTGTTCGATAAACCATCCAAATTGTCTTCCGTTTTTAAC
AGCTTTGTGAAATGCGCCAAGAAAGAAGTCGAGCAACAAATGAAACGAAA
AAGAGAAACATCATCAGAATGCCCAACTCTCATTTTACAATCATTTTACT
ATTGCAACCAAGACGAGTTGATGATTCCATTAATTGTTTCTGTTGTCAAG
CACACTCTGCGAAATCATCTCatctatttaaaagaattaATAGATTTGTT
CGACTTTCTTTTTTCTGAGGAATATTTTGTTATTGGTATGAATGTACTAA
GTGGGTTATCCAAAGAGCAATGTAGTCAAACAGATGATTTCAAGACGATA
GTCGACATTTATCTTACTCAACTTTTTAACAAAGCGTCGATTTATAAATA
TGTAAATGAAAAAGCTATTTTGGCTGAAATCCTTCTTAGAGGAAATAGAG
GAAACGTCGCTTCAAACATAGACAAGTATGTAGATCTTTGTCGGGAAGGT
AACGAAAAACCTGATGCCATTTGCAAGATCATCTTTGAGCTTTTggatat
ttcaatgaaaaacacAGAGTTGAGTTGTATAACTTTGATTGAAAACTTAT
TCGACTTATTTATTAGTTTGTTGTCAAACCattacacaacgttgtttcag
gAACTAACTATCAAGTTGTTCAGTGCAGGAGACTCGTTTGCTTCAAAATT
Ggagaaaatgttttcgaattttaattttatgtaccaaatcaaaaaaaggg
tggacttttttataagagaccTCATGTATAAAGAGCATCCCAGAACAGAG
ACTTTCAAGAAATTACTGGAATGTATTTTGAAGGTTGTTCAAGAAATACT
AGACGGTGGTAATCGTGAACCTCATTTTATAATATCGACCTTGTTACCAT
TTCTCCAaggaatttacaaaaatacttaTCACAAAGAACTAGTAATAGAC
TTCATCTCGTTAGAGAAATTTAATATCAATAGCGAGCAATATTATGCCAA
CTCTCAAAGTCGAGCATTTattaaaagtttgatttctgaATTCGATAGGA
ATTTGATCAAAACTGATTTCTATGCTGAACTTTTGAATGTTCAtttgaaa
agtttaaagtgCATACAAGAGAAAGGTTGCCCTAAGTTTAATTGGCGaca
agaaaatgcaaaaattccCGATCACCCATACGTagagatttttctcaaaa
gcGATCTTGTGACTTTTGTATACAGACATttcaataatattgaaaatgCT
AAAGGCTGGTTACAAAATTACGCAAGAACGATTGATTACAGTGGTTACTG
GCGACAACAAAATTACCGTTTTACTGGCATTGCTAGAGAAAATCAAGGTG
TAGTGGAAGTGGTTTTACAAAAAGGAAGAGGTGTTTACAAAATAATCcag
gaaaaatatttcaacttgGCGTCATTGATTGAACAGCTTGAAGTGAAATT
ACGAAATTTTCCTCGTATTCATTCCAAACTTCGTTCGTTGAAAAGACCTT
TGAAAATTAAGGATGACGAATCCCCAATTCCAAGGAAAGCCCAAACAATC
CGTGAAGAGTAAGCTACAAACAAAAACTTCTGCTGGGAGACTCGCACGGT
TTGTCTGATTCAACCAAACAGTGCAATTTTTCTGGTATTTGTCTCGGCAT
GAATGACGTCATCGTGATGTCAGAGGGAGAATTTGAAGATGCGTACATTA
ATGAGGATGAAAAGGAAGAAAtaagaaacagaaaattttaCAACGACAGT
ATTAGCAgtagtgaagaagaaaaagaagaagatttcGTCTCAAGATGTCT
TATACTTGCTGTTCCTTTCAATCGTCATTTCGAATCATTTTGCTATTCAA
AATCACCATCACAATGTCTTCAATATTTAGCGAATGAAGTTGACAAGGCA
TCACCACAGTTCAAAGTTCACCTGAAAGAACTATTTGACAGGTTCTCATT
GAAAGCATTTAGATGCCTTACTAAACATTACAAACAATTATTGATCGAAC
TTGTTACTAAGACCAAAGATGTGAAAACTGTCTCTTTGTACATTAACAAA
ATCATGGCACACAAGTTAAACTTTTCAGAGCAGATGCATGGTATCCCTGA
TAAAACTAAGGAGAAAATTGCAGAAATGTTCCAATCTGTTCCTTGGGAGA
AAATCAAAGATATTGTTTTGAATGTGATCGAAAATGTTGGGTTCTGGCAG
TATAAAAGATGGATGGTAGTGTTTGACCAATCAGCAATCATTGATATTGC
TCATAGAATTATcgatttgagttttcaaaaacttcaattttgcaATGGTG
GGCAAGCTTGTTCTCATTCGCTATgggaaaaaatctttcaaagtgTTCGT
GATCATGAGGAATTATGGAGACAATGGAGAGATGATATCTTGCAGTGTCA
GCATTtcacatcaaattttgaaattgtttcttCGATGTGTGATATATTGT
TGTTCGATAAACCATCCAAATTGTCTTCCGTTTTTAACAGCTTTGTGAAA
TGCGCCAAGAAAGAAGTCGAGCAACAAATGAAACGAAAAAGAGAAACATC
ATCAGAATGCCCAACTCTCATTTTACAATCATTTTACTATTGCAACCAAG
ACGAGTTGATGATTCCATTAATTGTTTCTGTTGTCAAGCACACTCTGCGA
AATCATCTCatctatttaaaagaattaATAGATTTGTTCGACTTTCTTTT
TTCTGAGGAATATTTTGTTATTGGTATGAATGTACTAAGTGGGTTATCCA
AAGAGCAATGTAGTCAAACAGATGATTTCAAGACGATAGTCGACATTTAT
CTTACTCAACTTTTTAACAAAGCGTCGATTTATAAATATGTAAATGAAAA
AGCTATTTTGGCTGAAATCCTTCTTAGAGGAAATAGAGGAAACGTCGCTT
CAAACATAGACAAGTATGTAGATCTTTGTCGGGAAGGTAACGAAAAACCT
GATGCCATTTGCAAGATCATCTTTGAGCTTTTggatatttcaatgaaaaa
cacAGAGTTGAGTTGTATAACTTTGATTGAAAACTTATTCGACTTATTTA
TTAGTTTGTTGTCAAACCattacacaacgttgtttcaggAACTAACTATC
AAGTTGTTCAGTGCAGGAGACTCGTTTGCTTCAAAATTGgagaaaatgtt
ttcgaattttaattttatgtaccaaatcaaaaaaagggtggactttttta
taagagaccTCATGTATAAAGAGCATCCCAGAACAGAGACTTTCAAGAAA
TTACTGGAATGTATTTTGAAGGTTGTTCAAGAAATACTAGACGGTGGTAA
TCGTGAACCTCATTTTATAATATCGACCTTGTTACCATTTCTCCAaggaa
tttacaaaaatacttaTCACAAAGAACTAGTAATAGACTTCATCTCGTTA
GAGAAATTTAATATCAATAGCGAGCAATATTATGCCAACTCTCAAAGTCG
AGCATTTattaaaagtttgatttctgaATTCGATAGGAATTTGATCAAAA
CTGATTTCTATGCTGAACTTTTGAATGTTCAtttgaaaagtttaaagtgC
ATACAAGAGAAAGGTTGCCCTAAGTTTAATTGGCGacaagaaaatgcaaa
aattccCGATCACCCATACGTagagatttttctcaaaagcGATCTTGTGA
CTTTTGTATACAGACATttcaataatattgaaaatgCTAAAGGCTGGTTA
CAAAATTACGCAAGAACGATTGATTACAGTGGTTACTGGCGACAACAAAA
TTACCGTTTTACTGGCATTGCTAGAGAAAATCAAGGTGTAGTGGAAGTGG
TTTTACAAAAAGGAAGAGGTGTTTACAAAATAATCcaggaaaaatatttc
aacttgGCGTCATTGATTGAACAGCTTGAAGTGAAATTACGAAATTTTCC
TCGTATTCATTCCAAACTTCGTTCGTTGAAAAGACCTTTGAAAATTAAGG
ATGACGAATCCCCAATTCCAAGGAAAGCCCAAACAATCCGTGAAGAGTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000068_pilon | genome | sc0000068_pilon:29212..33329 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 490-2925:1683 |
| Aaloc | 268-486:1203 |
| Aaloc | 160-267:904 |
| Aaloc | 1-159:1 |
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