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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000127_pilon:506979..513949+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_039418 ID=XLOC_039418|Name=XLOC_039418|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6971bp|location=Sequence derived from alignment at sc0000127_pilon:506979..513949+ (Clytia hemisphaerica_ch_hm2_pilon)
atgttgattttaatACCACTTCTATCAATTTGCAGTCTTGCAACGACTGC
TGGAACTAAAAATGTGGAGCCTAAAGGGTAAGATCTTAATatatccaaaa
aaaacaaacgttaCCTCTTTTAGCAGCCCTTATCTCACTTTCCCAACCTC
GCTTTTTCTTTCCAGGGCATGAAATCAAAAGAGAAGGAAACTAAAACTTT
GCGGCTCCTTGACGTATCCATTTTATATATGGGGTATGAATTAAAAAATC
GGCTAAAAACCCACCCCACTGCTTCTTAATTTGAAAATAACACTTAAAGT
CAATCTCAAAAGTATATGAgcactttatttttttgacgaATTCTCAGCTG
CAATATCAAAAGCCAAGTAgagttggaaagatatttccaaggagCATAAT
GTAATAGATTAAAGCTTTTTGagaagttgaaaaatgaagaagaaaaatga
acacAAATAGGGTTGTGAGCAGACGGGCTTACGTCACTCGACTTCACTCT
CCAATCCTTAGTGGGACTAAAAGAGAGGAAAAAtagaaatctttttattt
taatttcataaTCTAAAATTTTCTATATCAAATGACAATGGCCGCCCCTT
ACGTTTACCATTGCTAAGTCCACTGTATGCATACAAAAAAGTTAAACTGA
ActatattttcttttcagagcCCATGTATGTCAGAGGCTAGAAAAGTACG
AGACTCAAGAGCAGCAGACAAACACTAGACTGGTGTCAGAGAGTTACAGA
TACTGTTGTGAAAGATTTCTCTTGTGTATGAAATACTGCAGTGGTGTAAG
GTACCAGTTTAttagatattatatttttatctaaataagtttgcgtttat
cgacccagtgatattcataaTGGAAGTattcgtggcttggatcacgagag
ccaaacgtaaatctcgtgatccaagccacagTAAACTTCCAATATTATAT
TTTTACCCGCTCTGTCTCAAAACTCTTTTTATGACATGTTTGAGGAACCT
CTTAAACTTTTGACTAAGAAATTGCCTTATTTGGTTGTAAGATGGATAGT
GACTCGATATACTTAACTGAAAAGTCCATGGTGTTctaatttagaacgcc
atggacAAGTCCCTGTCCAATCTCTTACGCAAGAAGCAACTTGCACTCCT
TTTTGATTTACGGACAGACGTAATACAATCATGAGCTCCGGTCGTGAGTg
ttatcagaatcataaaaaagtgaactaaGAAAATGGGTTCAAGATTGCTA
ATGTCTGGAAATTATTATTTCGATTAATGATCAACACTTCAGGagagatg
gaaaaaatagcataatattttgcagtgaggactggcttatttgattgttt
tcagtgaggacaaaaagtggagtataattttccactggaacgatattttg
accaattttttccagtgggaaggggtcccagtgggtctttgagaagggga
CGCATCAAATAATGCCTCAATGAGGTGTCAAGGTGAAAAGACTCTTGAAT
CAATTCATGAACGTTTTAAAGTCCAGCACTTCCAGTGCTTAGTTTTACTA
CCGgattgttcttttgttttagataTCGAACAGTTTCAACAACAAAGAAC
ATACCAGGTCATGGTCATCGCATCATAAAATATTGTTGTGAAGGATGGAT
TCAAAAGGACCAAGAATGTATACGTAAGAcgattatttatttattcttag
TGTAGATTAGGGGTGCACTAAACAGTAAGTAAAACGActctaattcagac
atagtagaaaaaaagcaaaaagtaatggagggactAAACTAAACCCCGTa
acgtattatcatataacgcctatacacgcattataaacgattCCATTCTA
CACTACCATGTGATTCACAGGAATATTGAATATTGAACTGTGGAGACAGC
CTAATTTCATAGATTGAATTTTAGCTGATAAGAGATGTTCCACTTCTTCT
TGAATTCAAATTATCTAATGAAAGCTCTTATTTACAGTATAAGacagaac
acccctgtctcacagtcctagtggaacttttttctcagtggagataaaaa
ttcctattgaaatcccaatggggatagaaattgtattgttccaaggttaa
aaaattcagtggcaatggttttgaagtgcaatttttgaacattgaatttc
gaatggggatgaaataaaagttactTTCCAAGTGGGGCTAAGGttttttt
ctaaggtattttcccaccggagatggaatttttgtcaatctttccagtgg
gCCCGGGCtctcagcgggtctgtgacatagGGGTATGAAATTCAAGCTAT
TAAAGTTCCCTGGTCCGAGTCCTTTAATAACttacaaggaaaattttttc
atttttgctttcattattcctttaattttttttcagctacTTGTGATTTT
CCCTGTTTTCACGGGACGTGTATTCAACCAAATTTTTGTGGTTGCGTTGA
AGGTTATACTGGAAAATCATGTGAAAAAGGTAAGACAACTTTTTGTTCTT
GTAGAGAAATCGTACATTCAGATCATAGTCATAGGAGAAACAATATTTAG
GTTCGGTTAGGTTAGCTTTCTGCAGGTTCAGTCGTAGTGttcgccgccat
tttgaatattctttGCACTCCGTGTACGGCCgacgaaaaatatcaacatt
tcgCTGCGACGGCTTGAGACTAAGGTTTCTCCTATGACTATGTTCAGATC
GAGACCAGCATTTAGAAATATGGATTAAATCAATTAGGACACAAAATCTC
AATCtttttttAGAGATACAAATACCAACTCAAAAACCAGTGGACAAAGA
TTCTAACAACagtcaaaatgacaaaaatacctCTGaggatgaaaacaaag
aagtACAGGCTCACTATTGGTCATGGCTTGTACCCACCCTTCTTTTCATT
CTTCTAATTGCTGCTATGATAATTGTATACAAAAGAAGACAAGAAAGCAT
GTAAGTTGAAGTTTTGatacaaaatgaaattttgatttaagggctctgac
catcacaggaaaaaattttcgatttccaaggttggaaatttcaagttttc
ttagttggaaaaaagataaaatccaatggaaaatccaacctgaaaatgtg
tGACATTGtccaaggttggaaatgttgcattttccatggctcggaatttt
tgaaaattcagttggaaaaaagccaaaatccaagcttaaacaaggttgga
atttttaaaaaattcagttggaaaaaagccaaaatccaagctttaacaag
gttggaattttttaaaattcagttggaaaacaAGGTtggatttttcgaaa
atctaggttgaaaaaagccaaaatccaaatttaacaaggttggaattttc
gaaaatctaggttgaaaaaagccaaaatccaaaaagtgatggcagatatg
tggaaaagagatcttaagCAAGGttattgtttttgtgaacagtcactcgc
tagcctaggctcgatggctcccggtcaatctctcgtttttgttcgcacag
atacgtggttgatacagaggaatgtaaagagatggaaaaacagcttttct
gattactcaaagttcaacgatcacttctattgaaaactctattgtaaaaa
cgttgattaggtcgtTAAATgtaagtccagaaaagacggctcgccataca
aattggacggtttctacatgatttaacgataaaaatgaaaattagttttt
cctttttcgccgattactagttcaatttttaaaaataaggagCAAtcttt
ttaccaatgtatagcaaaagaaattcttaacgcaatgatattaaattgat
tcttgtaaaactgtcaaaaatcgagtaaaatcaagataaagttataattt
tctcgagctctagctctCCATAtaggtgcggtcatgatgcggttatatca
gtagaatcgctaagAAATtttgagcaagaagatataggcaccttttcgta
taggagaggtgtacccaaaatatgagccctaaaagtttgcgcataattaG
GCTTGAAACagaagaattttgtcacaacacgctaattatgcagatttttt
aaagcgacaacaaaagaaacctattaactcgacataaactcccttaaggg
caagagacctggtaaatgacgagccgtttttccattgttttcaagaagct
gttttccatctctttacattcctctggttgatattagatcactcacacag
ctcagcagggcgctatttgaaaccatgacacaagtaccctatgtgcttca
ctgtgcgaactcactgcgatttaCCGAGGCCGCTCCTAAgcgacgcctca
cctgacggaatcttacagcttgactgctcacattatagtcTAGTATCCAG
GTttgctatacatcaaaacagttttgagcgaaaaatcgcttgtggttttc
tcaaaggagcatgcgcagaaaatggttagaaaaacgtaatttccacatgg
atttttaacgttttccaaactgtttggagaaacacaaatttccaacccaa
aaagtctagttttccaatcgaaagggtttcaatttcataaaaatgtaatt
tccacatggatttttaacgttttccaatctgtttggagaaacacaaattt
ccaacccaaaaagtctagttttccaatcgaaagagtttcaattgcataaa
aatgtaatttccacatggatttttaacgttttccaaactgtttggagaaa
cacaaatttccaaccaaaaaagtctagttttccaatcgaaagggtttcaa
tttcataaaaatgtaatttccacatggatttttaacgttttccaatctgt
ttggagaaacacaaatttccaacccaaaaagtctagttttccaatcgaaa
gagtttcaattgcataaaaatgtaatttccacatggatttttaacgtttt
ccaaactgtttggagaaacacaaatttccaacccaaaaagtctagttttc
caagaaagggtctcaatcttagaaaaatgtaatttccacatggattttta
acgttttccaaactgttcggagaaacaaaaatttccaacccaaaaagtct
agttttccaatcgaaagagtttcaatttcataaaaatgtaatttccacat
ggatttttaacgttttccaaactgtttggagaaacacaaatttccaaccc
aaaaagtctagttttccaagaaagggtctcaatcttagaaaaatgtaatt
tccacatggatttttaacgttttccaaactgtttgggagaaacacaaatt
tccgacccaaaaagtctagtgtTTCAAcctgaggtatcaaatttacaaaa
atatgtattttcacatcgatttttgaccattttttttcaatttccaaact
gtttggaaaataaaaatttcccacccaaaaagtcatgttttccaaccagc
cttggaaaattgtcatttctacattgtttttttttcacttgatttttcaa
gcgcattggtttattctacaaaacctatgggtaatttacgttttccaaat
cactttaaagtaatcgctcaaatttccaaccttcaattataaaaccaaaa
tttccaacccaaaaatatcgaatttccagccttggaaatcgaacattttt
tcctgtgcatagtccaaaaattgattttggtatttgaacataaaagttat
atttcaggttccttaacacttttaacaaagaattgcctttataaattgct
ttttaatcgaatcacTTAAGAGTAAtttagaatttaattgcaaaaatgac
gttatgaactttaaaaagatgttaataatatgttgcatcaccctctttta
caaaaagtgcttagttttaatgggtaattaacttttttgtttcaaaattt
ctttacactgtccgcaaagaattgaactattttaaattttgtggaaaatt
tttgtaaaaagatgtgtcaaaagttatgactgtttttttaagcaaaatcc
agatgtaaaattgatgaaaaaccactattttgaaaatttcgagacaaaga
agcatttacaaaaattttccgcaaaaatttttattgttcggtaaaagata
caccatctactgcgaaaattttttcaaaatgttttttcttcgccgaaact
aagctcttcaaagttgaaatactcttccttgcaaaagtcttcattttctt
cttcatcaaattttttcaatgcaatttttgaattttcagattcaggaata
gtttgtctaacagaaaatgtataacgtgccctagttttgttggttacatc
agtcagaaaacacattttaaacaaggcaattatgaaaaattcactatggt
cagagcccttaacaagCACAAAATAAGGTCAAACGTGGGGCCACTCGAAA
TTACTCTTGACTTTATTCAACCAAAAGTAATTTCAAAGATGTGAATAACT
TGAATACTTTTTGAATCAGGACTTTGTCTCAGTCCGAGTTCTAGAACAAA
GCAGTCTTCTCaatagcgtagacaagaggggtgcaaaatttgtggAGGAG
GGCagatttgcctaagtaccctccCCGGGCCCTATACAAATTTTGTCTAC
TCTACTGATTTTGCTCTTACATTTAAGtagggaaaattttcgaaagataa
TCCTATAATTAGCTTACCATGCAGGCCTGTGTTATGCAGggggtgtcgca
ccgcccctAGATTACACTGAAAAACATTTTCCGCTCAATCATTTCTAAGC
ATTTTAACTGTACAAAACTAACTAACTTTGTTAACATTGCATAAAATTTA
ACTGAATGATGGAAGTTTTCTTGATGCCTTGTGTCAGCCATATATATTCT
CTTTAGACCAAGTGTATCTTCTTTACCGAGTTCTTTACCACATTTTTCAG
CTACAAGGAGACATTATTAGTCGACAAATCACCCGTTCAATATAATAGCC
TGCAAAACGAGGCATACAGCAGCCAAAGCTTTGATATCGAAGATGGAAAG
AGACTCGCCGATAAAGCATGA Coding sequence (CDS) from alignment at sc0000127_pilon:506979..513949+ >XLOC_039418 ID=XLOC_039418|Name=XLOC_039418|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1422bp|location=Sequence derived from alignment at sc0000127_pilon:506979..513949+ (Clytia hemisphaerica_ch_hm2_pilon)
atgttgattttaatACCACTTCTATCAATTTGCAGTCTTGCAACGACTGC
TGGAACTAAAAATGTGGAGCCTAAAGGatgttgattttaatACCACTTCT
ATCAATTTGCAGTCTTGCAACGACTGCTGGAACTAAAAATGTGGAGCCTA
AAGGagcCCATGTATGTCAGAGGCTAGAAAAGTACGAGACTCAAGAGCAG
CAGACAAACACTAGACTGGTGTCAGAGAGTTACAGATACTGTTGTGAAAG
ATTTCTCTTGTGTATGAAATACTGCAGTGGTGTAAGagcCCATGTATGTC
AGAGGCTAGAAAAGTACGAGACTCAAGAGCAGCAGACAAACACTAGACTG
GTGTCAGAGAGTTACAGATACTGTTGTGAAAGATTTCTCTTGTGTATGAA
ATACTGCAGTGGTGTAAGataTCGAACAGTTTCAACAACAAAGAACATAC
CAGGTCATGGTCATCGCATCATAAAATATTGTTGTGAAGGATGGATTCAA
AAGGACCAAGAATGTATACataTCGAACAGTTTCAACAACAAAGAACATA
CCAGGTCATGGTCATCGCATCATAAAATATTGTTGTGAAGGATGGATTCA
AAAGGACCAAGAATGTATACctacTTGTGATTTTCCCTGTTTTCACGGGA
CGTGTATTCAACCAAATTTTTGTGGTTGCGTTGAAGGTTATACTGGAAAA
TCATGTGAAAAAGctacTTGTGATTTTCCCTGTTTTCACGGGACGTGTAT
TCAACCAAATTTTTGTGGTTGCGTTGAAGGTTATACTGGAAAATCATGTG
AAAAAGAGATACAAATACCAACTCAAAAACCAGTGGACAAAGATTCTAAC
AACagtcaaaatgacaaaaatacctCTGaggatgaaaacaaagaagtACA
GGCTCACTATTGGTCATGGCTTGTACCCACCCTTCTTTTCATTCTTCTAA
TTGCTGCTATGATAATTGTATACAAAAGAAGACAAGAAAGCATAGATACA
AATACCAACTCAAAAACCAGTGGACAAAGATTCTAACAACagtcaaaatg
acaaaaatacctCTGaggatgaaaacaaagaagtACAGGCTCACTATTGG
TCATGGCTTGTACCCACCCTTCTTTTCATTCTTCTAATTGCTGCTATGAT
AATTGTATACAAAAGAAGACAAGAAAGCATCTACAAGGAGACATTATTAG
TCGACAAATCACCCGTTCAATATAATAGCCTGCAAAACGAGGCATACAGC
AGCCAAAGCTTTGATATCGAAGATGGAAAGAGACTCGCCGATAAAGCATG
ACTACAAGGAGACATTATTAGTCGACAAATCACCCGTTCAATATAATAGC
CTGCAAAACGAGGCATACAGCAGCCAAAGCTTTGATATCGAAGATGGAAA
GAGACTCGCCGATAAAGCATGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000127_pilon | genome | sc0000127_pilon:506979..513949 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 592-711:6852 |
| Aaloc | 406-588:2766 |
| Aaloc | 313-402:2389 |
| Aaloc | 211-309:1574 |
| Aaloc | 79-207:670 |
| Aaloc | 1-75:1 |
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