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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000135_pilon:491017..495501+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_039415 ID=XLOC_039415|Name=XLOC_039415|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4485bp|location=Sequence derived from alignment at sc0000135_pilon:491017..495501+ (Clytia hemisphaerica_ch_hm2_pilon)
catGGTAGACTCGCAAAGACGATGATTGAGAATGGagttatgataaaaaa
ttattgtttgGAATTCCGAAACAATGTAACCGTAAAAGAATGGTTTTACT
CTGTAAGTTTCAAAAACCAACTCAATTAAGAAAATCGTCTACTTAAGTTT
AGCTTTATGATTAAAATATGATTTCTGATTTGTACGTACCGCGCTCTATC
TAAAGAGATATTgcgaatgtgacgatctgacctggttgttcaaccaaaac
attcgaaactgcGTTTGCCTTTTACTTGGAAACAAATGTATATTGTTTAt
gtatttgattgacagttgattttgGTGCGACTGTTTGTTTTAGCCAATCA
CTGTGCGGAAAAGCTCATTTAAAATTATTCGAAATctgaatgaaaaagat
caaatccGTGCGACAACCTGAGCAGATTATCTTACGGAGCGatggccttt
agagtgaatGCGTGCCATGCGtggagtatcagaatctgctcggagattag
tTGTAACCTATTTATCACTTTCCTTCCTCTTTTTCAGCTTGACCACGTGA
TAGAAGCGAAATCGTATAGCAAGGGGTGTTTGAAGGATTATCATGTGGTA
CCGATTATCGATTCCAATCTTTTATTGTTGTATGTTAATGATCGATGTGA
TGTTAAAGAGAAATGTACTTGCAGAGAACCGATAAACGGGGTAATTGTCA
ATGTCGAACAAAATACCACATATGTTTTAGTATGGGAAGCAGTTTGTGAT
TTACATTCTTTCAAACAACAttcattttcaattaatttcCGCCGgggaaa
aatcaatttttcggtTTGACATTTAAAGTCTAAAACTTGCGGCGATCTCC
AAGGACCCTTCAAGAAAGTGGATATTATTTTCACCACCTACTTAATTTTA
TGTTATATTTTTCAGGAAAGATTTGGAAATTGTTCGAACGATATCAGCGA
AACAAATTGTGAATGTCCTTGCATACAACCCGTTACTTGTCTCAGTGATC
TTCGAATTACGTAAGTAAACGAGTGTTCTGGTGATATGCCGGACACAAGC
TCTCCCGCGCAGTTCGAGTGGCGTTACCATCGTAACTGTTTGTCGCGTGC
AAAAAACTAGCAGTATCTGGACAGCGCTGAATGTATTTGAAAAAGGAAGA
GTTGCTGCTTTGTAAAGAATATatgcgtttttttataagaatggtgtttt
ttttccGTTTCACAattgatattcttaactttttacgaaaaatcatcctg
aaatattttttacggTATTCTAACGAAAATCCAACCATAAATTTACCTTG
TATTACACGCCTGAAGCAAAAAATGGCCTTTTTTAAAAGTATTGAGCCTT
ACTTCGGGATATTTGgctatttacagttaaaaagCTCTGAAAATGACGAT
CATGTTGCCGAATTACATGATGGTACTCTAAAGGTCCCAAATAgtagggg
gagggggggggtctgaataaaagggggtccgaaattttttcaaaatctta
tgaACGGGGGAAGTTCGAATAAAAGCGGCTAAAACCAGGCTATTTgctat
ttagagcaattctTTTTAAGATAATCTAACCATGGAAGACGATAGCCTTT
AAACCAAAGAGCATAAATACGTTATAATATCAGGGGttgtcaaagcaaat
ttttcagaaaacgAGCTCAAATGCAACCCTTTGAGTTGCTACCATAGTAT
CAGagattgagttttcaaagaatatactGTAATGATtttggcctgtgctt
ttcacggtatggagttgcttaaaaaattgtgtattcacattaaatttcct
tttttaacaGATCCAATACGCTTGAATGCAATCCAgaagataaaagaaaa
acagattTCTCAGGGATATGGTACACAGGTGATGAAACTCAGTTAGATCT
TTGTATGGATCCCGAATGCAAAACACGGTAAGTACAAAGTGCATAGTTTT
CTCTTTCCTACagaaattttcaccaatatcTAATggtgattgaaaaatga
aattctgaAAGCTGTTAACGTCGGCCATTTTCCGATCACAAGCTATTTTC
TATGCCTTTAGAAGTAATCTTCTGATATTTTAACTGGTTATATGGAGCGG
AAAAGGGGGTAATAGAAAGATAGTGAtagtagcatgaaggtagagcattc
aGCCAGGTcatcccaaaatggtacttgatgcatctctgcttgatgctcat
caactaaagagacggatcaagggtaagtggaaaaATCCATGGAAAGGAGG
GGCGTCCTCCCATATCTTAGGGTGGACAGCTAGACTGTGGTCGCACATTT
ACTTAAAATATTGACCATTGATAATGGGGaaaaaaaGAAGTAGCTATTCT
AATATTAACAAGAAGCCGAagcggcatgaaggcccagctgacgtggcaat
aaccagATGTCGTTCGTAtcggagcccccccccccccagcggaccctcaa
ttcacgcaatcacgcaatttttttttgaaattcacacATTCATGCAAATT
tacctcgagtttcacgcaataacccgatttttcaggaaGTCGGGAagaat
cggggaaacattgaaaaatcgggaaaactgcacatgatcggtggaaaaaa
gggaaaattcacgtattcacgcacaaaatggCCCAGAAtcacgcattcat
gcaatcaaaaagtgaattttcacgttcacgcaaattttttcaattcaagc
attcacgcattttttttccaattttcacgcattcacgcaaccgaaaatgc
ccattcacacattcacacaaaccactggggggggggcgtaTCGGGTACCT
TAAGAGAACCAATATTTGCGGAATCTTATTGTTGCAATTTTAGGGTTTGA
AAGAAAACATCGAGTCTTAGAATCCTAATTAACATTTTCGGCAGAGATTG
AAATAcggaacattcaaaaatttaaaaaagttcgaaaattggctgaatga
aaaaaaaagaaaagataccagctgcgctggaaggtcagaaatgataaatg
atacgcaatatatgtatataatagatttactttatgtttttgttactagt
ataaaagaaaaaatcggtTTAGATTGATTCACAAACTTCAAATATTAAAT
GTTGACCGTCAACGTTCAGAAGTATAGATTTAACGcatagcatcatgaaa
aaacattccaattcaaatttacacgtgagctgcattttagtattcTTTAA
TGAGTTTACTTgggaaaattctctgtcaggtttgaaaaatccaaccaccg
aCCGTTTTTAGTTCAgagcgataaatccaaaattgaccattttcacgggt
agcatcatgaaaaagattccaaacttattcaaaattacacatgagctgca
ttttagtatcctttaataaGTTACAGCATAACTTTACTTGAAGAAATTCT
CTgcaaggtttgaaaaatccagccaccgaccgtttagagcgatcgatcca
aaattgaccattttcacgggtagcatgatgaaaaactttccaaacttatt
caaatttacacatgaactgcattttagtatcctttaatgacttacaacat
aagtttacgtggaaaaattctctgtcaAGCTTGAAATATAAAACTCCAAC
ATCCAAATGCTCCCTGACCTGACTCCATCTGTCCATCCATCtcgaaaacc
ttgaaaaatactttgccataaagagaatgaaatttgactttactGCCAAT
TCAATCCAATATAAGAGTAGGTCAAACATCGTGCGGGTAGGCGaggcaaa
aattctaaatcggccgctggtttagcctggactactggacttgttaattt
attgcgcgcacaggccccgacaaagccaaaatcttttcggtcagttgctt
tttaaaggcccactGGGCCAAAAAGGattttatttcactaaaatcctttt
taatcatatcaaatttttattttttacagttATACTTTGAGCGAATGTAA
TCGTTTCAAAGCTGGTTGCAATTGGTGTCATAAATATCCGAACGGAGCGT
CTGCGACTGACGATAAAAAATATTGTGAATACTCCGACAAACCATGCTTC
CCAGATTTAATTCCTAAAACAAGCCCTTCACCCCCAAAGAAACCTGGAGA
TAAAGATGGACTTTCCAAAGAAGAACTAGCTGGAATAATAGTTGGCTGTT
TGATATTCATTTTCATTATCTTGGCAATTGTTTACTTTAAACGGAAGAGC
ATCAATTGTGAACCATCAGCAAAATCTGAATCAACAATCGAAACGAATAA
CAACGCTGTCAGTAACGCACCAACACTACCTCGACAACAAAAAGCTTTTA
CCAACTTTGCTTATGTTGATCAGAATGACCCTGATTCGTTTTCACCGACT
GGTGCACCAAAAACACCGCTCCCACCAGAGGAAGATCCAGTTGCACAAGT
TGACGAGGACCAATCTAATATTAAAGATGGCAAACTTCCCGATGTTGTTA
TGAAAAATTCTAATGACAGTGAATTTGGAGCTTGA Coding sequence (CDS) from alignment at sc0000135_pilon:491017..495501+ >XLOC_039415 ID=XLOC_039415|Name=XLOC_039415|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2046bp|location=Sequence derived from alignment at sc0000135_pilon:491017..495501+ (Clytia hemisphaerica_ch_hm2_pilon)
catGGTAGACTCGCAAAGACGATGATTGAGAATGGagttatgataaaaaa
ttattgtttgGAATTCCGAAACAATGTAACCGTAAAAGAATGGTTTTACT
CTcatGGTAGACTCGCAAAGACGATGATTGAGAATGGagttatgataaaa
aattattgtttgGAATTCCGAAACAATGTAACCGTAAAAGAATGGTTTTA
CTCTCTTGACCACGTGATAGAAGCGAAATCGTATAGCAAGGGGTGTTTGA
AGGATTATCATGTGGTACCGATTATCGATTCCAATCTTTTATTGTTGTAT
GTTAATGATCGATGTGATGTTAAAGAGAAATGTACTTGCAGAGAACCGAT
AAACGGGCTTGACCACGTGATAGAAGCGAAATCGTATAGCAAGGGGTGTT
TGAAGGATTATCATGTGGTACCGATTATCGATTCCAATCTTTTATTGTTG
TATGTTAATGATCGATGTGATGTTAAAGAGAAATGTACTTGCAGAGAACC
GATAAACGGGGAAAGATTTGGAAATTGTTCGAACGATATCAGCGAAACAA
ATTGTGAATGTCCTTGCATACAACCCGTTACTTGTCTCAGTGATCTTCGA
ATTACGAAAGATTTGGAAATTGTTCGAACGATATCAGCGAAACAAATTGT
GAATGTCCTTGCATACAACCCGTTACTTGTCTCAGTGATCTTCGAATTAC
ATCCAATACGCTTGAATGCAATCCAgaagataaaagaaaaacagattTCT
CAGGGATATGGTACACAGGTGATGAAACTCAGTTAGATCTTTGTATGGAT
CCCGAATGCAAAACACGATCCAATACGCTTGAATGCAATCCAgaagataa
aagaaaaacagattTCTCAGGGATATGGTACACAGGTGATGAAACTCAGT
TAGATCTTTGTATGGATCCCGAATGCAAAACACGttATACTTTGAGCGAA
TGTAATCGTTTCAAAGCTGGTTGCAATTGGTGTCATAAATATCCGAACGG
AGCGTCTGCGACTGACGATAAAAAATATTGTGAATACTCCGACAAACCAT
GCTTCCCAGATTTAATTCCTAAAACAAGCCCTTCACCCCCAAAGAAACCT
GGAGATAAAGATGGACTTTCCAAAGAAGAACTAGCTGGAATAATAGTTGG
CTGTTTGATATTCATTTTCATTATCTTGGCAATTGTTTACTTTAAACGGA
AGAGCATCAATTGTGAACCATCAGCAAAATCTGAATCAACAATCGAAACG
AATAACAACGCTGTCAGTAACGCACCAACACTACCTCGACAACAAAAAGC
TTTTACCAACTTTGCTTATGTTGATCAGAATGACCCTGATTCGTTTTCAC
CGACTGGTGCACCAAAAACACCGCTCCCACCAGAGGAAGATCCAGTTGCA
CAAGTTGACGAGGACCAATCTAATATTAAAGATGGCAAACTTCCCGATGT
TGTTATGAAAAATTCTAATGACAGTGAATTTGGAGCTTGAttATACTTTG
AGCGAATGTAATCGTTTCAAAGCTGGTTGCAATTGGTGTCATAAATATCC
GAACGGAGCGTCTGCGACTGACGATAAAAAATATTGTGAATACTCCGACA
AACCATGCTTCCCAGATTTAATTCCTAAAACAAGCCCTTCACCCCCAAAG
AAACCTGGAGATAAAGATGGACTTTCCAAAGAAGAACTAGCTGGAATAAT
AGTTGGCTGTTTGATATTCATTTTCATTATCTTGGCAATTGTTTACTTTA
AACGGAAGAGCATCAATTGTGAACCATCAGCAAAATCTGAATCAACAATC
GAAACGAATAACAACGCTGTCAGTAACGCACCAACACTACCTCGACAACA
AAAAGCTTTTACCAACTTTGCTTATGTTGATCAGAATGACCCTGATTCGT
TTTCACCGACTGGTGCACCAAAAACACCGCTCCCACCAGAGGAAGATCCA
GTTGCACAAGTTGACGAGGACCAATCTAATATTAAAGATGGCAAACTTCC
CGATGTTGTTATGAAAAATTCTAATGACAGTGAATTTGGAGCTTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000135_pilon | genome | sc0000135_pilon:491017..495501 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 469-1023:3931 |
| Aaloc | 352-465:1812 |
| Aaloc | 256-348:916 |
| Aaloc | 103-255:538 |
| Aaloc | 1-102:1 |
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