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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000086_pilon:48227..56018- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_039290 ID=XLOC_039290|Name=XLOC_039290|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7792bp|location=Sequence derived from alignment at sc0000086_pilon:48227..56018- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGGGAATGGAGAGTCAACAAGTCGGAGAATCTCAATGCAAAGATCTGA
TGAAGGAACAATACAGGTGAACTATTTACATTGAATTCTAAGCAAAATCC
TACAGTGCATCAAGAGCTCTATGGAAATAAATCTGATTACTCTATTCAAT
TAGGGTCAGGGTTGATACTGCTAGAGTCTCACAAGCCTGAACACATTCTT
AGGTAGGCTGCGCGCATCCCCTCCATATTGGAGATGTGTATTGTGTATAA
ATTCTTGTCCAAGAGTTACCCCCATCTTGGTGTTTTATAGTTTTGGAACT
TGATTATCTTGATTAGTAAGTTTTATTTGAGTGATCTTTAAATTTGAATG
AAAAATTTAAATGGCTAGAGGTAAATATAATCATTGGATTTTTACACTTT
TTAAGAAAATTGAAACAATTTATACACAATAAGCACCCCCTATCAAAACA
GGGGATGTGTGCAGCCTACTTCTTAAGAGAACCCTTACCTTTTTATTACG
AGCCTTCCTTCTTTTAAATACTTTCTATCTTAGATATCTGAAAATGTGAT
GTTAAGGCTAAGCAAACAAAAACCTCCAAGACCTGACAATGAAGGTAGGA
AATAGTTTTCTATTTCATTTGCCCAATCAATGTTACTTAATGGTTTTTCG
AATGGGATTTTTATTTGATTGACATAACATCGAATTAACTCAGTATTCAA
GAATTGGATTGATCCTTTGCCAATCATATCATTATCTATCCCTGTTAGGA
CTGAGCTTTTACCGCCTACACCCTTGCTAAAAGATTCTCCTTGAGTTACA
AAGACTGTCAATTTTATTTGATTAAAGATTATTCTTGGGAAAACTGTAAA
CAACAAGTCTGTAGACACTTCCATTGCTTTTCAATGGAAATATTTTCAGG
CATACTGCGTTCACTACAAATTAAGAAAAACTGTTTGTATTGTACCCTTA
CACCTTCATACTCCACTGTTTATACTTCTTATTTTGATTTTATTTTGATC
ATCTGCTTTTACTTTTGTTATAGTAACTTTAGAACCAGGAGAAATTGTCA
TACAAGAACAAGATGTGAAGAGAATGCTTGACAAAGCTTTTCAAAAGGTA
GTATAATTATTACACGTGGCTGCACGTGGCAAAGTTATTTCCCCATTTCT
TTCGGCGTCTCACATATCATAATTATTGCTCCGGCCTAGGAGCCTTTAAT
TCTCTCTTCCGACAATGGTTAAGACATTTTTTGTCTGTTTATCTAATCCG
ATGATCTATTCCGATTTAACAAAAACGGATCACTGATTCCGATAATACTG
TGATTTGATTGGCCGAAAAGTATTTAGAAAAAGATGGCTATCGAAAGTGG
ACTAGCTGACTGTGTAGTGTAGCAAATACTGGAAAATCTCAGTGAAAAAT
TGATCATTTTCATCCTTATTCATGATGTTTTGGACATGATTTATGAGAAT
TTTGATGGTGCGTTGTACGTTGTACTGTATACTGAATTCAAATACGTGTG
TTTCTCATGATTTTATGCTGTAAAAATGATCTATTTTGGACTTTTGGTCA
TTTTTCATGATGATATAATTGGTGGTTGTCCCTTTTGGATTTTCAAACTT
GACAATGAAACTTTCAAACACACAGCCATTGATACACAGTATTTCTTGTG
GTGTTATGTATGGCTGAAAATGATCCTGTTTTGGACTTTGTTATTGTCGT
ATTCATCATCGGCTGGCGACCGTTCCTTTTGATTTTTCAAACCCGACACA
GATTTTTTACAAACATATCACTATGAGAATTCAATAAAGGATACTGAAAC
ACAGTTCCTGTGTAAATTTTAACAAGATTGGAGAAATTTTCACAGTCAGA
CAGTGTTATGGCTGAAAATTATCATTTTTGGACTTTGTTGTAATTTCATC
GCGGCTGGCGACCGGGCGACTGTTCCTTTTGTTTTGACCAAACCCGACAC
AGATTTTTTACAAACATATCACTATGAGAATTCAATAAAGGATACTAAAA
CACAATTCCTGTGTAAATTTGAACAAGATTGGAGAAATTTTCACAGTATT
ATGGCTGAAAATGATCGTTTTTGGACTTTGTCGTAGAGCTCTAATTTCGT
CGCGGCTGGCGACCACTCCTTTTGATTTTTCAAACCCGACACAGATTTTT
TACAAACATATCACTATGAGAATTCAGTAAAGGATACTAAAACACAATTC
CTGTGTAAATTTGAACAAGATCGGAGAAATTTTCACAGTGTTATAAAACT
GAAGATGATATTTTTTGGACTTTGTCGTAATTTCATTGGCTGGGGCGACC
GTTCCTTTTGAACATTTTTCAAACCCGAAACAGGTTTTTTCCAAATATAA
CACTATTTATTACATACACACTATTGTACCATTTTATTTGGTTTATCCTA
CTCTTCTCTAAGTATTATCCCAGCAGAAAAAATAATGTTAGCTAAAAACC
CATGGCTTAATGGGATAAACTTTCGCAGGGATTAAATTTCGCTGATTTCG
CGGATTTGGGTGTCATCCGTGAAATTAAGTCACAATGGAAATTTGGAAAG
GCCTCATCCGCGAAATATTTCTAAACAAAACTCAAAATTTGTCAAACAAA
TACTTTTTGAATGTTTACTGGCATCAAAGAAGTGCTAATAATGTGTATTT
CAACAACCAAAATGCACGATTTGACAGTTAAGTCACAAAATCGTGAAAAT
ATTGCCACCCAATAATGCCACCCGCGAAATTAAGTCCCCGCAAAATTTTT
GAATTTCGCGGGTAGGCCCAATCGCGAAATTAAATCCTCGCAAAGTTTAT
CCCATTAACGAAATTTTATCCAGACAATCAAATCAACAGTGCATCATGGC
TTCGCTATTGGCAAGTTTAGAAAAAAATAAATTTATAAGAACTTGGAAAT
ATTGACTTCTAAATGTTTATCTCCTTTAGCTCCAATTTTGAACTTTTTAG
TTGAGGATGAGTGGGCGGGGGATCGGCTTGGTTATTTAAGCAAGAAAGTG
TATGTGTAATAACTTAGAAGAGCTAAACTTCCAGCTGGTTTATTTATTCG
TTAAGATTATTTCTCATACTCGCTCTGCAATTGATTTATTGCTTTGCTTT
CTGATCTGTTCTGATTAGTAGTTTGTGGGCAACGTTCGAACACAACTAAC
TCAACAAGCTCATCTTTCACATCTTTTAATCTCTAAAGCCGGAGCTTCCA
GCGCAGCTGGTTTATTTCAATTTGTAGAGCTAGAGTTATCCCACAATCCC
ACAGTTCATTTCGAAATGATTAGACCGTGAAAGTTATTACCTTTCTTTTG
ATATCATAAGTAATTGATTAACGTGCAAGAGCAATTAACGCAAAGGAGGA
TGGGATCGCAAGTCGTACAAAAGAATAAATTTGTGCAGATTTGTTACTAT
TTTTAGATGTGTTGTGCTATTTCTCTCAGTATTTATCATGTTTCACTTTT
ATTAGTGAGAGACCAGTAAGAAACAGACCACCATCTTGCAATGATTTTCA
ATACTGTAGGATAGGATCCATATGCCATTTCTTTGGTTTACAAAAATTTC
AATTGTTTTATAAAGTTTCTGCTATAGCAATACATTCGTTATATAAACTA
TAATCATTTTTTGAGCCAAATATACCACGAAATCTTTTGGGTTGATTTTC
ACGAGTCAGCGTTTTGAAAAGTTTCACGTGAGTTTAATTTCAGCTAAAAT
TCAGTCGAAAATGGCCATGAAAACACCAATTTTTTTGTCACCAACATCAA
ATTTACAGGCCAAAAATCTGATTTAAAAAAATTCGCGAGTCCGTAATCTC
ACGCAATTTTGCTAAATTTTTTTCCGCGAAAAAAGATTTAAATTCGCCAA
AAACGCAAAATTAAATCTCGCGAAAATTAATCCGAATCTCCATAAAAAAG
AAAGATGGTTTCTTGGACATTTTAATAATCATTTCATTTCTGACATTCTC
AGGGTCAAAACATTGCCATTACGAAGCTTCAAGCAGAACAAGAGCAAATG
GCAGCTGACCAAAAAAGACGAGAGGAACAACGAGAAACGGAATATGAAAA
ACAATTGCAAATGTTAGCGGCATATTGGAAAGAACAATTCGAAATTGAAA
CTTCTAAGGTAAATTTTCAAGGGATGGCGTCATTACGCCATTACCTTGAT
GGCCGACAGTGGATACCAGTGGATTTCGAAAAAAATGGGGCTCCATGTCA
AAACTAAATGACAAATTAATCGGACTGACCTAATCCTGTCACTCCCCTGG
CCTACCATATAAAATCCTACCCAACCAAGACCATAAAGGGCTTTTTCTAC
ATCAGTAGTACAGTATCAGTAGACCCTTTGAAATGTTTGAATATCAGAGG
AAGGTCATTTTATTAGACCATGTTCGCGGTTCCGTTTCGCTCCGAAATTA
AATGAAGCCTTTTCATTGGTTAGAAGTCACGTAAAACTTGAATGCAACCA
ATAGAATGACTTCATCTTATTTCGGAGCAAAACGGGACCATATCGTGTGA
ACTTGGTCTAAATCTTCACCTCTCTGTTTCAGGTGCGAGATATAACACTC
GAAGACAATGAAGCATTCGAAAAGATGCAATCAGAACTGACCGAGAAAGA
GAAAGGTCTGATGGATGAAAAGCAATACATTGACAGTCAAAAAGAAGAAT
TATCTGCTTTCCAAGATAATTTGTCCAGTGAAAAGGAGACATTGTTGAGT
AAATATCAGTCATTCACTCAAGAGAAAGAATCACTGGATGGTGAAAAACT
TACTTTAGGTAAGTGTTTAGAACTTCTCCAAACCCAACTCTTTATTTGTC
TACGTTTAAAGGGAAAAGGCTTTTCTCGGTTGCAATGTCTAATATCAATT
CGAAAAGTTTTTATCATGCGATGGAAACCAGTGGCGTTGTGGCAGGGGGG
GCCGGGGGGGCCATGGCCCCCCCCAGCGGAGCTTTTTTGAAGGGGCGCCG
AAGAGCAAGGGGCGCCAAAAGAGATTTTTTTAAACGCCCCAATCTTAAAA
ATCATACTTTATGCGCCTTAAATTGCGCCCAGGACCAACTTTACTGAGAT
AATCTTAAAATACTTTCAATTTTTTTCGCTCGCTTCGCTCGCAATACAGT
TTGACTGGTAACTTCTTTGCAATCTAGCTTATTTATAAGTTTTTTTGTGT
ACAATATAGCATTATTAAATGAAAATCTAACTGCGCCCCAAGACCAATTT
GCTGACAACAATATTGAAATCATTGAACATCAATTTTTTCGCTCGCTTCG
CTCGCATTTTACATTGTTTCATTAAGTTTCTTTTCCCTCTAGCAAGTGTC
AAATTTGTCTATTTTTATTTAGTGATTTAGGGTGTCTTGGCAGTAGATTT
TTAAAATTTTTCTAGTCGGCCCCAACCATGGTGGGGCCTGCTTTTCCATT
CATCAAAGATATATCTACTCTTCTCCACTAAATATTCCCTTCGTCATAAT
GCGTAGGCAAATGAATTAGTAAAAGTTTAGAAACTGGTGGGTGGGGGCAC
CAGTTTGGAAAATTGAAGGGGGGCGCCATTTAAAAAAAATTGACTTTGGC
CCCTCCAGAAAAATTTTCCCACAACGCCACTGATGGAAACTATCACAAAA
AAAGTAATAAAAGTAAAAAGAGTACACACGTTTTTTTTAGTTCCTTCTGA
AATATGAGGCTGGGAATGATCTCAATTTGTTATTTTTTAAGATTTTGGCA
AAACTTGAGCCTGGTGTTCTCAAAAAACTGTTCTTAGAAAAAAGCGTGTA
ATACATAAAATGCTTTTCCCAAATTCCCTTAGAAAAGAAGAAATGAAGGT
TTCAAAAGTTTCTACTGTTTACTTAAATTCAACTTATTTTCCAGATCAAA
TACGCGAAGGATTAAGAGAACAACAACAATTGATCGAAGAAGAGAGAAAC
CGTTTAACTAACGAACAAACTAAGCTATCGGATGATAAAGCCAGGCTAAC
GGATGAGGAAGCTAGACTCTCTGATACCGTTGCTAGACTGACTGACGAAG
AGGCTAGATTAACTGGCGAAAAGGCCAAACTGGAAGAAGAAAATGATTTG
GTCTCGCGTGAGAAAATGAGCTTGGAAGAGAGGCAACGTGAACTTCACGG
AAAGGTTTCATTTTTTCTTTTGTCGTTACCAGGGGGGGGGGTGTTCTCAT
TCCAAATCCAGGGGAAACATTCCTAGCAGATTTCAGGAATCTTTCCGCTG
TTTTTTACGGGCATAAAACTTTTTTTGCTGCGTACAAATGCATATATGGC
CTTGAGGATGACCGCCAAGTTGAAGCTACTTTTGTTCGTCTTTTTCTAGT
TGTAAAGTGGCAGTAGGAAAGTTTTTACCGGGAATGATGAAGTTTACGGT
ACGTTTTAAAGAAACAAATTTTAAAGACACCTGAAGATTACTTCAGAAAA
AAGACATTACAATGGCCAATAAATCTATCTTGTTTTGTTATAGCTTCTTC
AACGTGAACAAGAATTGAATGACGAATTTGAACGAATATCTAGTGAAGTC
GACCGCAAAATAAAGTATGTTCAGTACAAGCAATTCAATGTTGTTGTTTT
TCTAACGGCCTTAGCTTTCCCTATGGAAAAATAACGAAAATTATTCACAT
TAATCTCGGCTCGACTTTGTTTGACATCCACCCATAGAAAATATCGTGGT
ATGAACTAAAAAATTCTAATAAGTTTAGGAAACTTTTTACCGACTTTATT
GATTATTAATTGATTTGACTTAAAATTTTTAGCCTTTCAGAAACTGTCAT
CGTCTCCTAATTTTAAATCTTATGTCTATGTATCACCCCTTCTCACAGAC
CCACTGGGAACCATTCCCATAGGAAAAATTGTCCAAAAAATCGACCCCGG
TCGAAAATTATCCTCCAATTTTTGTCCCCACTGAAAATAATCAAATAAAC
CATCCTCACTGCCAAACATTATGCTATTTTTTCCATCACCACTGAATTTT
CTGACCTGAAAACAAAAGAATTGAAATCGCCAGGCATAAAAAATATTGGA
ATACCAATCCCCATCGAGTTTCAGTCCGTTATTCTTATCCCCACCGGCTG
AAACAATTCCCCCGGATCTGTGAGAAGCGGGGTGTATATATTGGATCCAG
TATAAACAATCATTATTATCATTATTTCATTTTCTCAGACCATTACAAGC
GAAGACGATTTGCTCGGACAGTCAATCAAATGTATTGGATTGTTATCGCC
AACACAAGAAACAACCTTTACGATGTACTAAAGAAGTTCAAGAATTCGCT
AATTGTGTACAAACAGCTAGAGTGGTAAGTGTGTTTATTGATTGATTGAT
TGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTG
ATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGAT
TGATTGATTGATTGATTGAAATTTTGTGCACGCAAAAATTTTGAAATTCT
TGATTTGCAACAAAAAAGTCCACGTGAAAATTATCCACTTAGCTACTTTT
TTTCAAGGTATTACATAATCTTGGGTTGTATTATGGTCTATTCCAATCAC
ATCATTTTTCAATGATTGGAGCAGGTGATTTTAATAGCATAAATTACAGT
TACAGGACATGACGGTATTATGTATCGATTTGTGTAGCCGGTCAAAAGTT
TCATGACTTCCTGATTAGCAAAAGGTCTATGAACTTCCACTGTTAGCACG
CTCTTTTTAATTTATTGTTTTCCTTTAAAAAGTTTCATTTTATTTTTATT
TTTCAGAAAATGATGGAAAAAGGCTTGAATAAAGAGGCATAG Coding sequence (CDS) from alignment at sc0000086_pilon:48227..56018- >XLOC_039290 ID=XLOC_039290|Name=XLOC_039290|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2172bp|location=Sequence derived from alignment at sc0000086_pilon:48227..56018- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGGGAATGGAGAGTCAACAAGTCGGAGAATCTCAATGCAAAGATCTGA
TGAAGGAACAATACAGATGGGGAATGGAGAGTCAACAAGTCGGAGAATCT
CAATGCAAAGATCTGATGAAGGAACAATACAGATATCTGAAAATGTGATG
TTAAGGCTAAGCAAACAAAAACCTCCAAGACCTGACAATGAAGATATCTG
AAAATGTGATGTTAAGGCTAAGCAAACAAAAACCTCCAAGACCTGACAAT
GAAGTAACTTTAGAACCAGGAGAAATTGTCATACAAGAACAAGATGTGAA
GAGAATGCTTGACAAAGCTTTTCAAAAGTAACTTTAGAACCAGGAGAAAT
TGTCATACAAGAACAAGATGTGAAGAGAATGCTTGACAAAGCTTTTCAAA
AGGGTCAAAACATTGCCATTACGAAGCTTCAAGCAGAACAAGAGCAAATG
GCAGCTGACCAAAAAAGACGAGAGGAACAACGAGAAACGGAATATGAAAA
ACAATTGCAAATGTTAGCGGCATATTGGAAAGAACAATTCGAAATTGAAA
CTTCTAAGGGTCAAAACATTGCCATTACGAAGCTTCAAGCAGAACAAGAG
CAAATGGCAGCTGACCAAAAAAGACGAGAGGAACAACGAGAAACGGAATA
TGAAAAACAATTGCAAATGTTAGCGGCATATTGGAAAGAACAATTCGAAA
TTGAAACTTCTAAGGTGCGAGATATAACACTCGAAGACAATGAAGCATTC
GAAAAGATGCAATCAGAACTGACCGAGAAAGAGAAAGGTCTGATGGATGA
AAAGCAATACATTGACAGTCAAAAAGAAGAATTATCTGCTTTCCAAGATA
ATTTGTCCAGTGAAAAGGAGACATTGTTGAGTAAATATCAGTCATTCACT
CAAGAGAAAGAATCACTGGATGGTGAAAAACTTACTTTAGGTGCGAGATA
TAACACTCGAAGACAATGAAGCATTCGAAAAGATGCAATCAGAACTGACC
GAGAAAGAGAAAGGTCTGATGGATGAAAAGCAATACATTGACAGTCAAAA
AGAAGAATTATCTGCTTTCCAAGATAATTTGTCCAGTGAAAAGGAGACAT
TGTTGAGTAAATATCAGTCATTCACTCAAGAGAAAGAATCACTGGATGGT
GAAAAACTTACTTTAGATCAAATACGCGAAGGATTAAGAGAACAACAACA
ATTGATCGAAGAAGAGAGAAACCGTTTAACTAACGAACAAACTAAGCTAT
CGGATGATAAAGCCAGGCTAACGGATGAGGAAGCTAGACTCTCTGATACC
GTTGCTAGACTGACTGACGAAGAGGCTAGATTAACTGGCGAAAAGGCCAA
ACTGGAAGAAGAAAATGATTTGGTCTCGCGTGAGAAAATGAGCTTGGAAG
AGAGGCAACGTGAACTTCACGGAAAGATCAAATACGCGAAGGATTAAGAG
AACAACAACAATTGATCGAAGAAGAGAGAAACCGTTTAACTAACGAACAA
ACTAAGCTATCGGATGATAAAGCCAGGCTAACGGATGAGGAAGCTAGACT
CTCTGATACCGTTGCTAGACTGACTGACGAAGAGGCTAGATTAACTGGCG
AAAAGGCCAAACTGGAAGAAGAAAATGATTTGGTCTCGCGTGAGAAAATG
AGCTTGGAAGAGAGGCAACGTGAACTTCACGGAAAGCTTCTTCAACGTGA
ACAAGAATTGAATGACGAATTTGAACGAATATCTAGTGAAGTCGACCGCA
AAATAAACTTCTTCAACGTGAACAAGAATTGAATGACGAATTTGAACGAA
TATCTAGTGAAGTCGACCGCAAAATAAAACCATTACAAGCGAAGACGATT
TGCTCGGACAGTCAATCAAATGTATTGGATTGTTATCGCCAACACAAGAA
ACAACCTTTACGATGTACTAAAGAAGTTCAAGAATTCGCTAATTGTGTAC
AAACAGCTAGAGTGACCATTACAAGCGAAGACGATTTGCTCGGACAGTCA
ATCAAATGTATTGGATTGTTATCGCCAACACAAGAAACAACCTTTACGAT
GTACTAAAGAAGTTCAAGAATTCGCTAATTGTGTACAAACAGCTAGAGTG
AAAATGATGGAAAAAGGCTTGAATAAAGAGGCATAGAAAATGATGGAAAA
AGGCTTGAATAAAGAGGCATAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086_pilon | genome | sc0000086_pilon:48227..56018 - |
Properties
| Property Name | Value |
|---|
| Aaloc | 1051-1086:37 |
| Aaloc | 916-1050:654 |
| Aaloc | 844-912:1350 |
| Aaloc | 586-843:1947 |
| Aaloc | 358-582:3261 |
| Aaloc | 202-357:3841 |
| Aaloc | 130-201:6768 |
| Aaloc | 67-126:7260 |
| Aaloc | 1-66:7793 |
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