XLOC_039284 (mRNA) -

Overview


Name	XLOC_039284
Unique Name	XLOC_039284
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000086_pilon:371522..378522-
coding sequence from alignment at sc0000086_pilon:371522..378522-

mRNA from alignment at sc0000086_pilon:371522..378522-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_039284 ID=XLOC_039284|Name=XLOC_039284|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7001bp|location=Sequence derived from alignment at sc0000086_pilon:371522..378522- (Clytia hemisphaerica_ch_hm2_pilon)
ATGTCATCGTCACAGTCGAAAAAAGATGCTTTAGAAAAACTGGTAAGAGC
AATATTTCTTATTACAAAACGTTGGAATGTTGGTATTTATGATATTAGAT
TTCTGTTAACTATGACTTTGAGAGCAATTTGGGAAAATAGCCAAAAGTTT
ATTTTGACATTTTTTTGAAATGGCAAGACCAAGAGCAGTAAAAAGTGATA
GTCCAGCCAGCTTCTTGGTTCAGTTGATTGTCAATTACGTTTCGATTGAT
CTACGATTATGTTAGATAAGTTTGATTGCAATAGACCTTTTTTCAAAGAG
GACGTCCTGTTTGAATAATTATGTAGTCCAGCTATAAAAACAATGATAGA
GCCATGCATAATTACTGTATCATGCATATTATATTAATTATGCATGGTTT
TATCATTGTTTTTCTGCTGGACTACATAATTATTCAACAGGGTGGCCTCT
TTGAAAAAAGGTCTATTCAACATGGCTGCCTCTTTAAAAAAAGGAGGTCT
ATAGATCTTTTTTCAAAGAGGCCACCCTGTTGAATAATTATGTAGTCCAG
CAGAAAAACAATGATAAAACCATGCATAATTAATATAATATGCATGATAC
AGTAATTATGCATGGCTCTATCATTGTTTTTATGGCTGGACTACATGATT
ATTCAACAGGACGTCCTCTTTGAAAAAAAGGTCTATAATTATGTACTCCA
GCATAAAAACAATGATACAGCCATGCATAATTTTTAAAATATACATGATA
CAGTAATTATGCATGGCTGTATCATTGTTTTTATGCTGGAGTACATAAAT
ATTCAACATGGCTGCCTCTTTAAAAAAAGGTCTATTACAGTAAATTGGCT
CCTTTTTAAAGCTTAGCGTGGGTAGCCACCAATCAGCCAATACGCCATAT
TGGGGGGTCTGACCGGTGCCCACTACTACTGGTCTGGTTGGTCAGGGGTG
GTATCTGAGGGTACATGCCTGCATGGAAAAGAAGATTAGAGCAAGCGCAT
AAAAGTGCCGTACAAGAGTGAATATATAATTGAATCAATCAAGCATTATA
GTAGAATACAATCAGACTTTCCATCCCGTGATTTGCAAAACAGAAATGCG
CGCATTATTTTGATGATCTCTCACCATTTGGTCTCTGGAGATAAACAAAC
CCGTGCCGACCTTGGCTTCTGTGCAGGAGGCCAGGGTTCGATTCCCACTC
ACGGCAGTTCACTTGGCAAGTGAACGTTCCTTCGCCCGGGTCAACCCATG
CCATGTGAGGGGAATTGGGTAGTCAGTTCAAGGTGCTGACAGGACGCTCA
GTAGTAAGCGTCTATAGTTGCGAGAATAGGCCTCTAAAGCCTCCTGCAAC
TCAACCAAATAGAATAGAAATAGAAATTCCATATGGGAAGTTGGTTTTTT
AAGCTTTTCTTAAGTTCTATCAATCAAAACCCCCTCAAATTTTAATAAAC
CCCTACTATATCTACAATCCAATTCTCAAAAGAACTTCTTCAAAAATCGT
TCAAAGCTGCTGTAAAAATTGGTAAAGCGGGGGGTCCTGATAACATCACC
GCTAAGGACCTATCTTTAAACCCGGAAGCCTCAGTTGAGGGTCTACAGTA
CGTTGTCAAATGTAGTTTATCGTCTGGTACTTTTCCAACTCAATGGAAAA
CTTCTAAAGTATCTGCAGTCTTCAAGAAAGGCTCTAAATCGGATTGTTCA
AATTACAGGCCGATATCATTACTCTCAATCCCAAGTAAAATTGTTGAACA
TCTTGTCTGCTCACAATTAACTGACCATCTCAGAGAGCATTGTCTCGAAT
CCGAACACCAGTGGGGCTTTAGACCAAATCGATCGACCGATGACATCCTA
CTCTATATGACCGAGAAGTGGAGAAAAGCCATCGACTCCCGCCAATCAGT
TGGTACCCTGTTCATAGATTTTCGAAAAGCATTTGATAGCGTATCCCACC
CAATTCTACTAAAAAAGCTAAGCGCTTCAGGGGTATCAGGTGACTTTTTA
ACCTATCTTGAGAGTTATTTGTCGAATCGTAAGCAATTCACTGTTATCAA
TGGAGTCAACTCAGATTGTGCTGATGTGGAATTCGGAGTACCGCAAGGGT
CACTTATCGGCCCACCGTGCTTTTCAGTCAATGTTAACGACATGAGTGAA
AGCATTGATTGTGATCTAGATCAGTTAGCCGACGACTCAACAGCGTACAC
ATCAGATCCACATAGCGATATTGTCATCAAAAACCTTCAAAGAAGTGCCC
ATCAACTTGAATCGTTTGCCAAGAAAAACTCGTTAACCATCCACCCTGAC
AAATGCAAAGTTATGCTTATGTCTAAAAATCGCTTTGTTGGTCCTCTTCA
AAATATAACTATTTGTCATAAAAATGTTGAGATAATAAACTCAACAAAAT
GTCTTGGAGTTACAATCGATGACGAATTGAAATGGGATGTTCATGCTCAA
AAAATTACTAAAATGTTTGGTGTTAAAGTCAAGAAGCTATACCAAATGAG
AGGGATGCCAAAGTCTACCCTTTCAACCATCTATTTTCAAGGAATATTAC
CATCCGTCCTGTATGCTATTTTGATTTGGGGAAATTGTTCCGATGCTTTA
CTATCAAGCATTGAAAAAGTTCATATAAGAGCTGCCCGCTTCATTCAGCG
GATAAAGAAATCAGTCCCAGATATCTATGTTCTGTCACAGGCCAAATGGA
AGGAAATTATTTATTATTATAAGAAGAGCATTGCGTGTAAAGTGTACAAA
ATATACAACGGTCTCAGCTCACCACTTTTATCGGAACTTATCAGCAAATC
AAATACACGTGGAAATAGAAAATCTTCAAAAATTGACCAGGTAAAATTCA
CCTTTATTGATTATAAACGATCATTTATGTACAGAGCAGCTATTGTTTGG
AATAACATTCCCAGCTCAATACGAGAAATAAAAACTTACAAAGCTTTTAC
AAAAGCCTTGAATAAATCTGATTGTTTGGATAAAATTAATTTTAATATGA
CGGGTCGTGCACTATTATATAAAGATTATGTTTATTACTAAATTACATTT
ACTGAATATATATTTTTTTCTTAGCAAATTTTTAGCTTATTATTACCTAG
AGTTTATTTATGTACTTTTATATATGTATATTTCTCCTAAATTCTCCTGA
GTCTTAATCCTAATCAACTTTTTGTTCCTATACAAAAACTCCTAGATTCA
ACTAACTTTTAGCTTGATTCAACCAACTTTTAGCTTGATTCACAAGATTT
TACTTTTTCGTTTTTTAGCCAGTAGGTCCACATCAGTTTTTTACTGCCAA
TATGTACAGAATTGTGTATAATTGTATATAGTTTTGTATATAGAACCTGA
CCTGCTTTACCAAATAAATTAATAATAATAATAATAATAATAATAATGTT
CTTTCTATACATGATATTGTAATACCACCCTGAAAAGTTTTTGCCAATTT
TTGCTATCAAAAGTTAGAAGCTGGAAACCCCCTTTCCCTAATCTCTTGCA
GGCAAAAACGCTTTCGTTTACCTCCCAAACAATTTTATTCAGGGAAGTTT
GAATTACAGGAAAGATGTATTTGAATGGCATATCCTGGGTAATATTCGAT
TGTGTTTGACAATCGAATCGTAATCGTTCAACTGCGTTTGATTGTGCTCA
ATTGATTTGGCGTTTGATTTGTTAAATTGACACTGTCTGGTCTATAGTGC
ATCTAGAAATCATCAACAGGACCGACAGGACCTATCCAAATTATTTACCT
GAAGTTCCTGGTACATTTTTTATCCCCAGATGACGTCGTACAGGCCCAAG
CTAACTAAAAAATTTTCATGAGAAAACATGACCACATCATATACCAAATG
AAGGGTCTTTAAACATAGATTAAGGAAAGGTCATTAACCATAGCTGAGAG
TTTCTCTATAAGAAGTTATGAAGGTTTCTTTAACGTCTGCTACCTCTCTT
TTTACCTGGTCCGAGAAATGGCATTTTTAAGGCCAAAAATCGACGTTTTG
GACGTTTTTCGATGACGTCAGCATTTTCCTAGGAGCATTTTCAGAAGAAA
TCATTCCCATGATGACTAGATCTCGAGATATTTTGGTTTAGATATTGAAA
ATTATCAATATTTTTTGCTGAGTCAGCAGTTTTTCACCATATTTACCCAC
CTTACTAAAATGAATTATCTCAAGGTCTAGACACTAAAACATAACAAACC
ATACCATTTTTGGAAACTACAAACTCAGGGCTATCCAGCCGTGGGAATGA
TTTTTCTGAAAATGCTCCTAGGAAAATGCTGACGTCATCAAAAAACGTCC
AAAACGTCAAATTTTGGCCTTAAAAATGCCATTTCTCTGCACCAGGTGGT
CGAAACTTAACAAATAACCCCATTTTCTTTATCTACTTTTCACACTGAAT
CCATTGGTAGCAACAGATATTTGATTTTCAGACCTCGAAAAAACTTGATA
AGTTCTAGATCGATTTACTAAAAATTGATTCACTCGAAAACTTAAGGAGA
TTCGAAGGGCAAATTTTTTTGTCGATTCTGCACCCTATTAGGAGCATAAT
ATCAAAAATTTGCCCTGATCTAAGGGGTGCCCTACAAAGTGACACAATTC
ACTACCTCGGCCGCTGGTCTAGTTGACAATTTTATAAAGTGTGTATTTTT
TTTAAAAGAAGGTGGAATACACCGTGTAAAGTTATTGCTCTAATAGTTTT
TTCTGTAAGATTTAAATAATTTCACTTTTAGGATAAAGATTATGATCAAA
CCATACCGGGAAACAGTGCCAAAACATCTGATTATTATACAGTTAAAAAC
ATTCCAGACAGATTCAACAAACCAGGTATAGCAATTTTTTTCTTTTTTTT
TCCCTTAACCCTTTCCGTGCCGATGTCGTATATATCCGACATGCAAATTT
TCACTGTACTTGCCAATGTCGGATATATCCGACATCAAAGTTTTTTACCT
AATTGCCGAGGCCTTTAAAAAAGAGGGAGCTCTATTGCCGAGAAATCAGC
TTTTAGGAAAATGGCTTTCTTATTTGCCAATGTCGTATATATCCGACATA
AAAAAATCCAAATAGTAATAGTGACAGTATATATTAAGTGCTCAAAAGAT
TTATTTCAGGTTTATTTTAGTCTATCATAAAATATATATAAAACAAATGT
CAAATACAAATGTCAAACATTGGCAAATAGGAATAAAATATCCTTGTCGT
ATATATACGACATGCGGCAACAGGAGTTAAAATTTGCATGTCGTATATAT
ACGACATCGGCAAATCAGGTTACTAAAAAAAATTACCCCTCGGCAAATGG
ATTGAGGTACAAAAACAAGGTAACGGCACGCAAAGGGTTAAGAAAACCTT
TTTTTTTCTCTTAAATATTCTTTTTCCCTTAAAAAAATGTTTTTGTTAAC
TTTGTTAAATGTATTTTCTGTTTGAATTTTACATTTTTGCTAAAATAACT
CTTGAAATATTTCATGAGATTGCAGGTAAAAACTGTTTTCAGGTGTATTA
TTTTTTGGCAAAAATTTGGCATCTTCGAGGCTATTTTCAGCTTATTTCAA
TTCACGGCTCACTGCAAAACTTTTCAAAACGCTGACTAAGAAAATAAATC
CCAAAAGTTTGTTAAATTAATCTGATTGGAGCATTAATACATTGATTTAG
ACTGAAGGTATATTATTTCTTGAGGTACAGTAGGGAATATTTTGTGTCAC
AAGGTTTTTTTTAAATGAAATAAGTGAACTACTTTCAAACTCTTTTCTTA
CAGAGTTACTGCCAAACATAGGGAATCCTGTCTTTACATGCCCTATAACT
GTCCAAGCTACTAATGAAAAGAGTATTGAAAATAAAGCAGACCAGGAAGG
TCAGTGAATTATTCAATACTTTTTGATAGAAGAAATCCTTTTCATTTTCT
GAAAGTCTCTAATTGGGTAATCTGGGGTATAGGCTCTGCAAAGAATGAAT
TGATTTTTTTATTAAGAAGGTGGTTAATTTTCCGAAAGTATCATTTTGAA
GCTGTTATAATAATAATAACATTATTCTTTTCATTTTGATCTCAAATATT
TTGAACAATTCAAAATAAACTAAGTATGAATTCAACATCATTTCACTTTA
TAATAAATGCCAGTCGGGTACAAAAGAATGGTGATGCTCTGTCCTAGGAA
TATTGGTTTTTCATTAATCCTCTCGAAATCTGTCGAAATCTTAACAGAAA
ATTTTGTATGTTTTTTTCTCATCAGATTCGTTTAAAGGGTATGCCAAAAA
GCAAGCACATCCAATGTATATGACTAGCGCAATGGAATACGGGTATGTGG
CTTATAATTCTTAGGTTTTGTTCTTGTCTAAATCTGATATTTTACTTATA
TATCACAATATATCTAAAATGTATTGTCAAAGTTAGATAAATCTCTGTAT
TTTTCAAACCCTGTAAAGTTTTCTTAAGATTGGCGTACCCAAGTGTTTAC
ATCACCGTTTATAGCATGTTTTGATAGTAAACTTTACTGTGTGTATTTGA
ATACGAATTTTACCAGTGGTCTCTTTTGCAATGAAGTAAACCTTAAGGCC
GTACTCCACTTTCGAAATGGGCGACAGTTTTTTTCTTAACCTTTTTTACC
TGAAGAAAAAATTACGTCATAAAAAAGTTTCGCGCGAACAAAAAAAAGTT
GAAGGAAGTTCTACTTTTTTCATCCGTTACGTCAATTTCTACCAATGGAA
TTGCTTCATTTTTCAACCGACCAATGACCTTACAAAAACGTCAAAAAGTT
TTCGCTCATGTCGCGCGAAAGGGGAGACCGGCCTTTAGTATATTTGTACC
ATTTGACTCGTAAGTTTATTTCTTTATTAATCCAATTTTAGTAATCGTGA
GCCAAGTGTCCACGTCATGCCTCAGACGTTTCATGCCAAAAGTCAGAAAT
TCACCGAGCATCTTGGACAATGTGGAATGTATAAAAACTATTCATTGAAC
ACTTCTCTAGATAAGAATCCAGTCTCCTCTCAACTCGATGGTTTATTTTG
A

Coding sequence (CDS) from alignment at sc0000086_pilon:371522..378522-

>XLOC_039284 ID=XLOC_039284|Name=XLOC_039284|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=918bp|location=Sequence derived from alignment at sc0000086_pilon:371522..378522- (Clytia hemisphaerica_ch_hm2_pilon)
ATGTCATCGTCACAGTCGAAAAAAGATGCTTTAGAAAAACTGATGTCATC
GTCACAGTCGAAAAAAGATGCTTTAGAAAAACTGGATAAAGATTATGATC
AAACCATACCGGGAAACAGTGCCAAAACATCTGATTATTATACAGTTAAA
AACATTCCAGACAGATTCAACAAACCAGGATAAAGATTATGATCAAACCA
TACCGGGAAACAGTGCCAAAACATCTGATTATTATACAGTTAAAAACATT
CCAGACAGATTCAACAAACCAGAGTTACTGCCAAACATAGGGAATCCTGT
CTTTACATGCCCTATAACTGTCCAAGCTACTAATGAAAAGAGTATTGAAA
ATAAAGCAGACCAGGAAGAGTTACTGCCAAACATAGGGAATCCTGTCTTT
ACATGCCCTATAACTGTCCAAGCTACTAATGAAAAGAGTATTGAAAATAA
AGCAGACCAGGAAGATTCGTTTAAAGGGTATGCCAAAAAGCAAGCACATC
CAATGTATATGACTAGCGCAATGGAATACGGATTCGTTTAAAGGGTATGC
CAAAAAGCAAGCACATCCAATGTATATGACTAGCGCAATGGAATACGGTA
ATCGTGAGCCAAGTGTCCACGTCATGCCTCAGACGTTTCATGCCAAAAGT
CAGAAATTCACCGAGCATCTTGGACAATGTGGAATGTATAAAAACTATTC
ATTGAACACTTCTCTAGATAAGAATCCAGTCTCCTCTCAACTCGATGGTT
TATTTTGATAATCGTGAGCCAAGTGTCCACGTCATGCCTCAGACGTTTCA
TGCCAAAAGTCAGAAATTCACCGAGCATCTTGGACAATGTGGAATGTATA
AAAACTATTCATTGAACACTTCTCTAGATAAGAATCCAGTCTCCTCTCAA
CTCGATGGTTTATTTTGA

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_039284	XLOC_039284-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000086_pilon	genome	sc0000086_pilon:371522..378522 -

Properties


Property Name	Value
Aaloc	301-459:160
Aaloc	235-297:775
Aaloc	139-231:1247
Aaloc	43-135:2271
Aaloc	1-42:7002

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XLOC_039284 (mRNA) -