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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000027_pilon:160009..165508- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_039250 ID=XLOC_039250|Name=XLOC_039250|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5500bp|location=Sequence derived from alignment at sc0000027_pilon:160009..165508- (Clytia hemisphaerica_ch_hm2_pilon)
ATGTCTGTCAAAATTGAATCGGTATGGGACCACTGCTTTGCTAATTTCTA
TCTGAATTTTTGCTAACGGTGCGGAAAATTCATAATTGACACTGTGTAAA
AGATTAAGGTGATTTGAAGAGTTCTTTTTGAAGAATTTTCGTTTTTTTGT
GTTTTTTTGTGTACAGAATTTGTATTGGGCTCTTCCAGAAAATGTCCGTA
CAGGGGGGGGGGTTTGAGGATATATTGTCCAGGAGGTAGCGAAAAATAAT
CAAAATTTGCCTTATCCGGGTGGTAAATTTGCTCTGTCCGGGGGGGGGGG
GCAAAAGCCACTTGTCCGGGGGGGGGGTAAATTACTGAAAATTGTTACAT
CTTCCACCCCCCATTTTCATTTTTTTTCTGGAAAAGCCCATTCGCTGTAT
CTTGTTACTTTTTGAATGACCCAATTTGCCGAAACAAATTCAAATTAGGT
TTGTTAAATTCGCAGTTCGTCGGGTCAAGAGAAAACGAGGATTTCAGGGT
TTTGGAAAAAAAATTAACAAACGCGTAGTCCTGGGGGGGGGGGGGGTACT
AGGTTTGCGAGGTGACGGGTATGTCCGAGCCGAAAATCGAAAATCGACCC
TTTGAGAGACAAAATTTTGGTGATTTTGGGACCCTTTGAGAGACTTTTTC
CTAAATTTTGGTCCATTTTTTCCAAATTTTGGTTTGATTTTCACCAAATT
TTGGTCAAAATTCTTGGAAATCGTGACCCTTTGAAAGAGAAATTTGATTT
TTGTGATTTTGGGACCCTTTCAGAGACTAACTTTTGAATTTGTACCCCTT
TGAGAGACTTTTGAGGAATGAGAAAAGGTACCCTTATGGCTCGCACATAC
CCGGCACCCATTTTGCCTAAGTACCCCCCCCCCCCCGGGCGCTTAGTTAA
GACATTCCTCGAATTTCCTATGTTTAGCTGTCCAAGGAGGAAATTAGTTG
ACTTTAAAGATCTTTCAGGGTTAATTAATTTGTCCCTGATTGTTAAAATC
GAATTGTAATTAATCCCCGAATTAATGTCTTCTAATTTTTTACGTGTCCA
AAATAATTATTTATTGTGGTGCGCTATACATTGGAAAAGTTTACGGTATA
AATCCTTTTTCTTTGCCGACAAATTTTCCTACCTAGGAGTTGTAAAGAAG
GATGAAATTGAAAGATATTAATTATAAATTAAGATGAAATAAAATATGTG
CTCAGTGGGGGGGGTACTAGGTTTATAGGAGTACAACGGGGTGCCGGGGG
GCCTTGACTAAAAAGTAGGAAAATGTTTGCGAATTTTATGATCCTTAACC
TTATTGGGACTAATTTGACCAAATTTCGATGTTTATGGGGGCAAAAGATT
ATCCTATTTTCCGACCATTGATGGAACTGAAATTTAACTTTTAGATTTTT
CCAGAATTTACATCCTTACACGGACTGCCAGGCTCCAAAAAGGCACCCTC
AAGGGCGGTACGAGACCCTTACCCTTCACTTGCCTCCCCCCCACTATTTT
TTGAATTTTTATGGTAATAATTTTTAGGTGGATGAATTTTTAAAAGTTTT
ATAGAGTTTGAGCTGTCATTATAACACACTGCTCCATCACACACTAATAT
TTATATTCTAAATAATGAATACTTTTATAATTATATTATTATATAGCTAC
TTATAACTCGATAAAGATATTTTGTGTAAGTAGGGCTTAAAAATGTGGTT
TCCTTTTCTTCTTTTAAGAGCATGGTGTGCACTCGGCCTTATTTTCGAAT
GTTTTCATGTTCGAAGTTCGAATTCGAATCTTGTTCGAAATCGAATGTTT
ATGTTCTTATCCATAATGGTAGTCAAAAACATTCCATCGTTACGGAAAAC
AAAAACATTGGCTCTCAGATCAAAAATCAAGAAAATACAGAAGAAAGTGT
GGACATTATCATCATTTAAATCTTTATTGAAAAAAAATCATTATTTATAA
CTTTTCTAGATCAGCTGCACAAGCTCTTCGATTTTCAAAGGTAGTTTTTC
TTCGTTTTCAAAGATTTTAGTCGGTGTTTTTCCAAGATGACCTTGTTAGT
CATCGTCCCCAATTCGCCAAATCATTTTTACATTTGATGGATCTGTGTGT
CCCCGATTTATCTCCCTGGGGAGGTGGGGTACTGGGGTATGAATGTCCCA
AAAATCTAAAAAAATTTTAGTTTCCCTACCCTCTACATCCTATGGGCGGT
GGTTTTGTCAAAAGCAACTGCATTAGCTGCAGCAGAAGGGTTTTTGGTTG
ATCTTTGCATTAGTAACTGAAAAATAGTGAGAAAAGGAGACAGTCTATAT
TTCCAAATAATCTTGGATTTTTATCAGAATTTTCTCCAATTTTTCAAAAA
GCTAATGAAATATATTATCTTGAAAGCTTTAATTAACCAATGAAAAATGA
ATTGTAAAGGTAAAACTGCAAAGGGTGATGGTGTGGAATTATTAGCTACA
AAAAAAGACTTACACCGATGTCTGGTTAGTAAAAACTGCTGGTCCAAATT
TTCGGAAACCGCGTTTCTCAGGAATCGTAGGGTTTGTCGGGACTTTTTAA
TCGATATTTAGCCTTTTGATTGAGGGGTAAAAAAACATAACTTGTTTTTT
CATTTAGCCGTCGTAGGCACTGAAATTAGATTTATTTTGAACGGACGTAG
ATTTAATTAAATATTTTTTCTGTTTGCTTTTTCAGTATTCTTGCATTATG
TCTAATGAGGACAGCAAGGAAAATTTGCTATCTTTACACTTGCACCATTT
CGCACGTAAAAACAGACCGCTCAGTCCGTTCATCTCCAAATTACGGTTCT
TGTTAAACTGCACCAAACATCAAGATGCTATACATTGGTCGTCAGATGGT
AGAGCTATCGTTATCACAAATGTTGAAGTTTTCAAACAATCTGTCCTGGA
CAATGAAGCAGAAATGTTCAAAACAAAAAATTTTACTTCCTTTGTCAGGC
AACTCAATCTCTATGGTTTTCGAAAGGTAACTGAAAAATGTTTTTATATG
CAAGCTTCCCTTTGTCTGTTTTTTTTTCTCGTTCATCAAACTCTTCTGTC
TTGGAGTCGTGTGACCAATGTGACTAGCCTAGAAATCTAAGCTAGTTTGA
TTCAGTCACTTGGATAAATCTGATGGTTAAGTTGTGACTGAATAACTATT
CCAAGGCAAACTTAAAATCCGTAAATATAAAAAATCTTAAAGCGCCGAAA
ACGCTATATTGCATAAGCCGCGTGTCCTAGCCTTGTGAATACGGGCTTAG
TTAACTAGGCTACAATGTGACCAACGACCTCTAGAAACAAACTTGATTTT
TTTGTCTTAAGATGTTTCGAACTAAACGAAGCTTCACGAGGCTTCCAGTC
CTCCTCGCCTAATTATTTTGCAAGGAGGCTTTTACTACCTTGAGAGGATA
TCATTATAATCTTGTTGCAATCTTTTTTTCTACAATTTCTTTCTCAGGTA
CCTAGTAACGGGAAATCCGATCCTGCAACAAACATGAAATTTGAACACAC
TAATTTCCGAAGAGAACGCCCAGATCTCATGCAATACATTCAAAGAACGT
GCGTTGTGGGTGGAAAACGGAAAGGGGAACTACTTACCACTTTCAGTCCA
GAGACACGCCCTTTGGCAATGAAAAAAGCAACGCCCATTTTGTAAGTATG
TTTCTTTCTCGGAATTTTTTTTTATTGAAACAAGATTTTCATTCGACACT
CAGGGATAATAGGGATTACTATCTAGCTTTCTTTCTCGAACGAATTTTTT
ATCCTTAGCACACGGTTTTGTAGAGATTTGTGATTCAGACTATAGAATGT
TCTTGTCAACAAGTACCAGCTTTAACTCTTGTTGCTTTACTTCAACCAGT
GTTACCATTATAAGTACCTCGTTATGCTCATTTCAGATACATTAAACACG
ATAACAAAGAGAATATATTTCAACATCAAATTCAAAGTGGACTCAATGCT
GGTAGTATTGTTGGAAAACCTCTTGGTCTCTCTATACTTAAAGCTGTCAG
CACAAATGTAAGCATACAATGTCTATGTTCAAAATAAATACCTTTGACTT
TTATAAGAACCAGTAAATTTTGCCTGAGCTTGAGATCTTAAATTTCTATT
GTTCCAAACAATAGCGGTATTGTTCTGAGGGCCTAAATCTGAGGCTGGTG
TTCTTGCGATTTTTGGAATTACTGACATTCGTGACGTAATCACTATTCAA
ATTTGACATCGCTAAAAAATACCCGGTTTTTACGAGTTACAGATGGTTCC
TTTCCCCCTTTTAGATACCAGGATCTTCAAATGTTTCTTTGATCAACAAT
CAACACTTTGCCATCAACGTCAAACCCAACATACGAACTGTTTTTGCGCC
ATCCAAAAATGTCCTATCAACTGACACCAAAATCATCTCTTTCAGGTTTG
TCTCACCTTTCACGTCTCCTTTCCCTGCACTTAGCTATGTACATTCACAT
TTCCAAAACGAAATTTCAAACTTTAAACTTTCTGAGTGGCTTTCAAGGCA
AATGAAACAAGTTTAACATATCAACTATGATATCGTTGGAAAAATTCTTT
TCCTCGGCTATTGAAAATACCAGAGCTTATTTTCTTGAGTCTCAAAAATG
GTTTGGCCAATATTACCCAAGGGGGTACTTAGGCAAAATGGGTGCCGGGT
ATGTGCGAGTCATAGGGTCCCTTTTTCAAGTCCCCCAAAGGGGTACAAAA
ACCTTTAAAAAGCAAATGATTCTCTGCAAGGGTTCCAAAATTACGAAAAT
CAAAAATCAACTCCTTCATAGGTTCATAAGTTCTTGAAATTTAGATTAAG
ATTTGAAAAGATTGGCTGATATTTTAGGGAAATAGCCTCTCTAAGGGCGG
CAGAAACCTCGAAATTCAGTCAATTTTCGTAAATAATTAACAAATTGACC
CACTCTGTTACGCAACTTATTATTACACCTCGAAAAACGTCTCAATTCGA
TTGAATTTTCAGCCAGATTATTGAGCAAAACGTCAAAAGTTCACCACCAG
TACCTCGAACTTCTTCACCACAACAAACTCATCAACCAACGATTGCAGAT
CCTACAACCAAAAATTTAAACATCTCAGACAATCCACCCAACACGACCGA
CAATGATTCAACCACCGAACCCATTCTCTACTCAGTTACCGATTTACCAA
ATACATCAAGCGAGCATGATTACGCTTTACCGACAACACCCGACAAATTC
CCGATCGTTCCCGATGAGAAGCCGGCAATTCATCCGACAAATACATCATC
GCCGAAATCCCCACCAATGATTACCGATCAAGATATTTATCAATTTTTAA
ACGAGAATTTCAGTGCTGAGAAAGAAGTCGTACAATCCTTGTTAAGTCTA
CCTGAAAGTCAACCTGATCAAATTTTTGATGATTTGAAGACGCTAGCTGA
AGTCTCCTCAAACCCTCTGCTTGGTGTTGATAACGTTATCAAACTGCAAA
GTGGTAATGCAACACCTAGAGAAACTGTGGTTTCTGTAAACCATATTTGA
Coding sequence (CDS) from alignment at sc0000027_pilon:160009..165508- >XLOC_039250 ID=XLOC_039250|Name=XLOC_039250|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2592bp|location=Sequence derived from alignment at sc0000027_pilon:160009..165508- (Clytia hemisphaerica_ch_hm2_pilon)
ATGTCTGTCAAAATTGAATCGATGTCTGTCAAAATTGAATCGTATTCTTG
CATTATGTCTAATGAGGACAGCAAGGAAAATTTGCTATCTTTACACTTGC
ACCATTTCGCACGTAAAAACAGACCGCTCAGTCCGTTCATCTCCAAATTA
CGGTTCTTGTTAAACTGCACCAAACATCAAGATGCTATACATTGGTCGTC
AGATGGTAGAGCTATCGTTATCACAAATGTTGAAGTTTTCAAACAATCTG
TCCTGGACAATGAAGCAGAAATGTTCAAAACAAAAAATTTTACTTCCTTT
GTCAGGCAACTCAATCTCTATGGTTTTCGAAAGTATTCTTGCATTATGTC
TAATGAGGACAGCAAGGAAAATTTGCTATCTTTACACTTGCACCATTTCG
CACGTAAAAACAGACCGCTCAGTCCGTTCATCTCCAAATTACGGTTCTTG
TTAAACTGCACCAAACATCAAGATGCTATACATTGGTCGTCAGATGGTAG
AGCTATCGTTATCACAAATGTTGAAGTTTTCAAACAATCTGTCCTGGACA
ATGAAGCAGAAATGTTCAAAACAAAAAATTTTACTTCCTTTGTCAGGCAA
CTCAATCTCTATGGTTTTCGAAAGGTACCTAGTAACGGGAAATCCGATCC
TGCAACAAACATGAAATTTGAACACACTAATTTCCGAAGAGAACGCCCAG
ATCTCATGCAATACATTCAAAGAACGTGCGTTGTGGGTGGAAAACGGAAA
GGGGAACTACTTACCACTTTCAGTCCAGAGACACGCCCTTTGGCAATGAA
AAAAGCAACGCCCATTTTGTACCTAGTAACGGGAAATCCGATCCTGCAAC
AAACATGAAATTTGAACACACTAATTTCCGAAGAGAACGCCCAGATCTCA
TGCAATACATTCAAAGAACGTGCGTTGTGGGTGGAAAACGGAAAGGGGAA
CTACTTACCACTTTCAGTCCAGAGACACGCCCTTTGGCAATGAAAAAAGC
AACGCCCATTTTATACATTAAACACGATAACAAAGAGAATATATTTCAAC
ATCAAATTCAAAGTGGACTCAATGCTGGTAGTATTGTTGGAAAACCTCTT
GGTCTCTCTATACTTAAAGCTGTCAGCACAAATATACATTAAACACGATA
ACAAAGAGAATATATTTCAACATCAAATTCAAAGTGGACTCAATGCTGGT
AGTATTGTTGGAAAACCTCTTGGTCTCTCTATACTTAAAGCTGTCAGCAC
AAATATACCAGGATCTTCAAATGTTTCTTTGATCAACAATCAACACTTTG
CCATCAACGTCAAACCCAACATACGAACTGTTTTTGCGCCATCCAAAAAT
GTCCTATCAACTGACACCAAAATCATCTCTTTCAGATACCAGGATCTTCA
AATGTTTCTTTGATCAACAATCAACACTTTGCCATCAACGTCAAACCCAA
CATACGAACTGTTTTTGCGCCATCCAAAAATGTCCTATCAACTGACACCA
AAATCATCTCTTTCAGCCAGATTATTGAGCAAAACGTCAAAAGTTCACCA
CCAGTACCTCGAACTTCTTCACCACAACAAACTCATCAACCAACGATTGC
AGATCCTACAACCAAAAATTTAAACATCTCAGACAATCCACCCAACACGA
CCGACAATGATTCAACCACCGAACCCATTCTCTACTCAGTTACCGATTTA
CCAAATACATCAAGCGAGCATGATTACGCTTTACCGACAACACCCGACAA
ATTCCCGATCGTTCCCGATGAGAAGCCGGCAATTCATCCGACAAATACAT
CATCGCCGAAATCCCCACCAATGATTACCGATCAAGATATTTATCAATTT
TTAAACGAGAATTTCAGTGCTGAGAAAGAAGTCGTACAATCCTTGTTAAG
TCTACCTGAAAGTCAACCTGATCAAATTTTTGATGATTTGAAGACGCTAG
CTGAAGTCTCCTCAAACCCTCTGCTTGGTGTTGATAACGTTATCAAACTG
CAAAGTGGTAATGCAACACCTAGAGAAACTGTGGTTTCTGTAAACCATAT
TTGACCAGATTATTGAGCAAAACGTCAAAAGTTCACCACCAGTACCTCGA
ACTTCTTCACCACAACAAACTCATCAACCAACGATTGCAGATCCTACAAC
CAAAAATTTAAACATCTCAGACAATCCACCCAACACGACCGACAATGATT
CAACCACCGAACCCATTCTCTACTCAGTTACCGATTTACCAAATACATCA
AGCGAGCATGATTACGCTTTACCGACAACACCCGACAAATTCCCGATCGT
TCCCGATGAGAAGCCGGCAATTCATCCGACAAATACATCATCGCCGAAAT
CCCCACCAATGATTACCGATCAAGATATTTATCAATTTTTAAACGAGAAT
TTCAGTGCTGAGAAAGAAGTCGTACAATCCTTGTTAAGTCTACCTGAAAG
TCAACCTGATCAAATTTTTGATGATTTGAAGACGCTAGCTGAAGTCTCCT
CAAACCCTCTGCTTGGTGTTGATAACGTTATCAAACTGCAAAGTGGTAAT
GCAACACCTAGAGAAACTGTGGTTTCTGTAAACCATATTTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000027_pilon | genome | sc0000027_pilon:160009..165508 - |
Properties
| Property Name | Value |
|---|
| Aaloc | 760-1296:538 |
| Aaloc | 628-756:1237 |
| Aaloc | 508-627:1614 |
| Aaloc | 313-504:2054 |
| Aaloc | 22-312:2816 |
| Aaloc | 1-21:5501 |
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