XLOC_039238 (mRNA) -

Overview


Name	XLOC_039238
Unique Name	XLOC_039238
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000192_pilon:565286..570320-
coding sequence from alignment at sc0000192_pilon:565286..570320-

mRNA from alignment at sc0000192_pilon:565286..570320-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_039238 ID=XLOC_039238|Name=XLOC_039238|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5035bp|location=Sequence derived from alignment at sc0000192_pilon:565286..570320- (Clytia hemisphaerica_ch_hm2_pilon)
ATCAACACATCAGTATCATTAAGGTATCCTCATGATATGATTTTCTGAAA
AACTTTGATTATTCATATAACTGTAAGGGGAGGTTTATTGACAAAGTTTG
GTTAACACATCAGCAAAGTTCTTTGAACCAAGTTTTCTAAATTTCTAGTT
TTGCTGTTTTGGACTGGGTTAAAATCCTAAAAAATTTCTACTTTAAGCAA
TTTTGTGAAGCAAATACTGGTAATAGACCCAATGAACCTCTTTCAAGAGA
GAATATACTATCATTTATGTTAACATGGGGAGTGAATAATGCCTTGAAAG
ATAGGGAAAAAATCCTGTTGACACCTCGGTTTTGAGGGGGTTGCATCAAA
TTTTGAGAGAGGGTTGCTCTAGTCTAGGGGTGATGGTCCCCTTCTGAACA
ACGAACCGAAATAACATGTTTGTTTCTATGCTTATAAGTCTTATGCTTGT
ATAAGAAAACATGTAGTAAACTACTTTCTGCCATTTGATCTTTAGTGATG
AGGTGGATTTTAACCAAGAATACACAACAGATAGAAATCAAGAGATCCTG
CACATTCCGAGGTAAGTTTGGTGGGAACATTGTGATCTTTTGGCCAGGAA
AGTGATTTATTATTATGGTTATCTGCAGTCATGAGATTGGTTGGATGAAT
AATAATTATACCGGGTGTGAAAAAATTTCTCCCTGTTTGATTCAAAATTT
CGAAAAAGTGAAAAATATATTAGCTTGATTTTTTCGAAATCGTTTAGAGG
AGGGTTTAACTTAAGTTAAACTAATATATGTTTTCACTTTTTCGCAATTT
TGAATCAAACAGGGGGAAGTTTTTTCACAGACACCTGGTATGAATTGTAT
TATTCATTTGAGATTTTATAACTTATTACATCTTACAGTGACAATGACAG
TGATGTTGACGTTGTTAATGTGACTCAATTTGAAAGTGGCAACAATCAAA
ATCAACAAAGCTATAATCGTCTCACAGAAAGGTAAACAATTACTGAAGTT
TCTTAATATGAAAACTTAACCCCTGCTGCACCTCTTTTTAAGATTTTTCT
TGACTACCCTCCACAGTGTTATCTCATATTTTAATTCCAGAATTTTTGCT
TCGTTCTTTTGTTTGCTCCTTTTTAGGATATTTTCCTTTAATGTCTATTA
TTTGCTCTCATTTCTAATCAGCATCTAGCTTGTGTGAGTTGTTAATTTTA
AGTTAATACAAAATGAAGGTCTTTCCAATATATCTTACTAACTGACCTAA
GTGAACATACAAATTTATTAATATTTCAGGACAGTTGAACTTGATGAAGA
TCACATTTTCAATAACGGAGACGAAGATAAAGAAAACAACAATCAAGAAA
GTGAAAGGTATTATCTAGATTTGAATTTAAATTTTCAATTGTGACCTTTC
ACTTAAACGTGTATTCGACTTTACTGAATTTGATTTCATATTAAAATAAA
AGATAAACTCTCAGGGCAGAAATAGATTTTAAAACATGACTGATTTTTGT
TTCTAAATTTTTATTTAAGCATTCCTGCTTGTGATCCTGATCCCCAAATT
AAAACTACACAACCCATCAACAACGTGACAGCATTAAAGATGATCTTCGA
TGCAAACCCTGATGTTGTTTCAAGTTCTCTGCCAAAGCATATTGAGAAGA
ATGCATATTTTTTATTGAAACTTGATTCTTCAACAGATGAGTATTACGAT
GGTTATAATTGGAGACAAACAAGTGGAGAATCTGTGAAGTACTACCATAT
TGATGAAAATGATAAAGTGGTATCAGGGAAGAACAAAAACTGGTTCAAAG
TTAGTAGGATTCGTTCTAAAAATACGTCAGCTGCTGATTTTAACAGACTG
ATAATAACTGTTGAAAACTCATTCAAAGTGCGGTGTGAGTTTGCTGTTGT
TCAATACAGGTTTGATGATAAACCACACAAAATCACGATCAAGCCTCATG
GCAATTCTTCTTCAACTATACCAAACATTCCTGTAAAGAAGTCAGTATTG
GAAAGGGTTACTCAAGAGGTGAGAATGCAAAAACATTCAAATAAACGTGT
TCTACATAAACTTGAAAGTGAGAATGGAGGGCTGTTGGCTGATCCTGGAG
ATGTGCCAAGGAACGAACGCCAAATTAAATACGTTAAATCAAAAGAGAAG
CGAGGAATGAATGATGTTATCGCAGATGTGCTAGTGTTACAGAAGGAAAT
GAGTCATTTTGTTCAAAGGGTAAGAATGTTTCCTCGTCTGTTTATTTCAA
TCTTGTTTGTCCCTCTTTTTTGTTATTAGCGGTATAAACTAGTTCCACGA
TAGAACACTATTACTAAATATATCAAGGAAATCTTTATTAAGAGTTGATA
AAAAGTTGCACAAGCCACAAAACTCTTGCGTAACTAGGGGTCAAGCAATT
GGTTCCAAACATCATAATGACTAAGTATAAATACTCACCACCCCTTCATA
GTGAGCACATGCCCCCTTAAAGGAATTTTTGGATCAAATTTATGGGGCAA
TTTAAAATTTGAGGGGTGGTTTGAAGAAAAATTGGGGTGGTTAAAGATCA
AGGGGAGGGGGCTTGTGGAAATCTTTCCTCTCAAACACTTGATAGTTTGT
TATGCAAAAAGCAATAAACTAATTGACATAACAAAGAGTTCAGAGGGGTT
GAGAAAAAAATAAGGGTGATATTTTGCGAGGGGTTTGGTCCACACTTAGT
GATGAGATTTTAGCTCCCCCAAGTACCTTAGCTCCCCCAAAAAAGTGCTG
CACTTCCACCCCCTCCCCCGTTGTAATGGGGTCTGGTGCTGTGCATAAAT
TTGTGTGTTGCATTTTTGTTTTAATCATAATTTCATCCTTTAGGTATTTG
TTGATGAAAACACGCCCACGGTTATACTCTACACAAAAGAACAAGTCGAT
TCTCTTGCAAAATTTTGCACTCCACCTGAAAACGTGCAATGTTCAGTATT
AAACTGTGATATGACATTCAATCTCGGTGATTTTTGGGTCGTAATTACGA
CTTTCTCAAATTTAATGGTTTATTCCAAAAGGTATGGAAGACCTATAACT
GCTATTGGCCCTGTCATGGTGTGTTACCGCAAAACCACTAAGCAGTATCG
TTCTTTTTTCCACGAAATGGTTGCGGAGGAGCCAAAGCTGGGAGAGCTAC
GTGCTTTTGGACAAGATGGAGAAAAAGCAATCTTTGACGCTCACAGCAAA
GAGTTCCCATTTGCCATTAGTTTCATTTGTTCCATTCATATCAAGGGTAA
TATGGAAGAGTATATCAAATCAACACTCCATCTGAGTGACCAGTTCTATG
ATGTAGTGATCGCAGATGTCTTTGGTACTGATACTCGTGAGGGGCTGTAC
CATGCATGCTATCGGGCTGAATTTGATGAAAATTTGGCACGGTTGAAAAC
TAAATGGAACAACCTCGAAACAGAAGAACGGAGATCAAAGAATGATCAGA
GTCGACCTGCTTTTTTCAAATATTTCGAAAAAAACAAGAAAGAGATTGTA
TACAACTACTGCAGGCGATTGCTGTTAGTTCAGGCAAATGTCTACCAGCA
CAATCAATTTTCAACAAATTCTACAGAATCAATCAACAAGGCGATTAAAG
TCTGGACAGACAATCACAAGGACGATCTTCCAGGTTTTATGGTGGCTATT
CATGATTTCATCCAGCACCAGTACAGTGAAATGAAGAAACCGCTGCTGAA
CAAACTTTCTGATACAATGATGGTGAATCCCGGATACCGAGAACATGTTG
TGTCTGGTTATGACAAAAAATCAGGTAAAATTGCATGATTTCCTATCTCA
ATCTTTGGCATTTAACCCTATTTGTATCAGGGGGTGAAATCCACCAGGCT
GGTGAAGTGCTCTGAAACTTTCTAAAAAAGGTTTTTGCAAATTTTTGTGA
TTATTACCACCAGGTCGGATTTTATGACTTTATAGTGAGAACATACCGTA
AAATTCAACTATAAAATTCCTTAAAATCTTGTAATCTTAAATATATAAAC
TTTTGATAATCTTCAAAATTGTTTCAATCTTTGACAGATTTTAGATAGAA
ATGAGAGGATTTAGAAGATCTTTTTTTTTTACAGCTGACGAAAAGAACCG
TGTATTGACAAGAATTCCCTGTTCTATCCCACTCAAGGAGATCTCTGTGC
CAATTATAGCAAGTGCAACAGAAGTTGTTGATCAAGAGCCAGAGTTATTT
GATTTAAGTCTTTTGGAGGAACACATGTCTGGAACCATTATTCAAAATAT
TGAACAAAAAGCCAACCGGATCAAAGGTATTGATTTGTTTGATTATGTTG
TTACATATTGTGCTCACCCCTTCATATAAAGGTAGCCCGACTGGCTGAGG
TTGGATGGATTTTGGAACATTACGTCACAATTTTAGACGAATCAAATGGC
TAAAAATAGATCATCCGACGTTCGAAAATCTATCCCACCTTACCTAGCCT
GACCAGCCTGCCTCCATATTAACAGCCCCTTAATCGGACCTGTTTTGTCC
AATCAAATTCTCACAGTTTTTACGATTTTCATGAAGGCTCGAGTAATCAA
TTTTATCGAATTTCTGTCGTTCAATTAAGTTTGATTGTTAGACTGTTCGC
TCAAAAATCTCTGTCTGGATTAATTAGCATCAAAATTTTGTTGTTTGCAT
ATCAGGTAAAATGAGAGATGGTTTTACAGGACCCAAGTCGAGGATTTTTG
GGAGTGAAAATGGAACTGATGTGTACTTTGTCAATGCCACTGCAAATGGA
AATTTCACCTGTACATGTTTGATGTTCAAGACTTACAGCGTCTGTTCCCA
TTCGCTTCTTTCTGCTCATGACAACAAATGCCTGCAACAGTTCATCAAGT
TGTCATTGAAAAAACCAACGAAATTAACACCCGCTGCTACCTTTGGTGCA
AATAAAAACGCAGGAAAAAAGCCAAATCAGTCGGTTCGCTCAAGGAAGAG
GAAATCAACGACTGCTGAAACTGTGCCTCAAAAACGGATGACTCTTGATG
AAGTCTTGAAAGATACAGAAGCGGATGAAGAGGTG

Coding sequence (CDS) from alignment at sc0000192_pilon:565286..570320-

>XLOC_039238 ID=XLOC_039238|Name=XLOC_039238|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4926bp|location=Sequence derived from alignment at sc0000192_pilon:565286..570320- (Clytia hemisphaerica_ch_hm2_pilon)
ATCAACACATCAGTATCATTAAGATCAACACATCAGTATCATTAAGTGAT
GAGGTGGATTTTAACCAAGAATACACAACAGATAGAAATCAAGAGATCCT
GCACATTCCGAGTGATGAGGTGGATTTTAACCAAGAATACACAACAGATA
GAAATCAAGAGATCCTGCACATTCCGAGTGACAATGACAGTGATGTTGAC
GTTGTTAATGTGACTCAATTTGAAAGTGGCAACAATCAAAATCAACAAAG
CTATAATCGTCTCACAGAAAGTGACAATGACAGTGATGTTGACGTTGTTA
ATGTGACTCAATTTGAAAGTGGCAACAATCAAAATCAACAAAGCTATAAT
CGTCTCACAGAAAGGACAGTTGAACTTGATGAAGATCACATTTTCAATAA
CGGAGACGAAGATAAAGAAAACAACAATCAAGAAAGTGAAAGGACAGTTG
AACTTGATGAAGATCACATTTTCAATAACGGAGACGAAGATAAAGAAAAC
AACAATCAAGAAAGTGAAAGCATTCCTGCTTGTGATCCTGATCCCCAAAT
TAAAACTACACAACCCATCAACAACGTGACAGCATTAAAGATGATCTTCG
ATGCAAACCCTGATGTTGTTTCAAGTTCTCTGCCAAAGCATATTGAGAAG
AATGCATATTTTTTATTGAAACTTGATTCTTCAACAGATGAGTATTACGA
TGGTTATAATTGGAGACAAACAAGTGGAGAATCTGTGAAGTACTACCATA
TTGATGAAAATGATAAAGTGGTATCAGGGAAGAACAAAAACTGGTTCAAA
GTTAGTAGGATTCGTTCTAAAAATACGTCAGCTGCTGATTTTAACAGACT
GATAATAACTGTTGAAAACTCATTCAAAGTGCGGTGTGAGTTTGCTGTTG
TTCAATACAGGTTTGATGATAAACCACACAAAATCACGATCAAGCCTCAT
GGCAATTCTTCTTCAACTATACCAAACATTCCTGTAAAGAAGTCAGTATT
GGAAAGGGTTACTCAAGAGGTGAGAATGCAAAAACATTCAAATAAACGTG
TTCTACATAAACTTGAAAGTGAGAATGGAGGGCTGTTGGCTGATCCTGGA
GATGTGCCAAGGAACGAACGCCAAATTAAATACGTTAAATCAAAAGAGAA
GCGAGGAATGAATGATGTTATCGCAGATGTGCTAGTGTTACAGAAGGAAA
TGAGTCATTTTGTTCAAAGGCATTCCTGCTTGTGATCCTGATCCCCAAAT
TAAAACTACACAACCCATCAACAACGTGACAGCATTAAAGATGATCTTCG
ATGCAAACCCTGATGTTGTTTCAAGTTCTCTGCCAAAGCATATTGAGAAG
AATGCATATTTTTTATTGAAACTTGATTCTTCAACAGATGAGTATTACGA
TGGTTATAATTGGAGACAAACAAGTGGAGAATCTGTGAAGTACTACCATA
TTGATGAAAATGATAAAGTGGTATCAGGGAAGAACAAAAACTGGTTCAAA
GTTAGTAGGATTCGTTCTAAAAATACGTCAGCTGCTGATTTTAACAGACT
GATAATAACTGTTGAAAACTCATTCAAAGTGCGGTGTGAGTTTGCTGTTG
TTCAATACAGGTTTGATGATAAACCACACAAAATCACGATCAAGCCTCAT
GGCAATTCTTCTTCAACTATACCAAACATTCCTGTAAAGAAGTCAGTATT
GGAAAGGGTTACTCAAGAGGTGAGAATGCAAAAACATTCAAATAAACGTG
TTCTACATAAACTTGAAAGTGAGAATGGAGGGCTGTTGGCTGATCCTGGA
GATGTGCCAAGGAACGAACGCCAAATTAAATACGTTAAATCAAAAGAGAA
GCGAGGAATGAATGATGTTATCGCAGATGTGCTAGTGTTACAGAAGGAAA
TGAGTCATTTTGTTCAAAGGGTATTTGTTGATGAAAACACGCCCACGGTT
ATACTCTACACAAAAGAACAAGTCGATTCTCTTGCAAAATTTTGCACTCC
ACCTGAAAACGTGCAATGTTCAGTATTAAACTGTGATATGACATTCAATC
TCGGTGATTTTTGGGTCGTAATTACGACTTTCTCAAATTTAATGGTTTAT
TCCAAAAGGTATGGAAGACCTATAACTGCTATTGGCCCTGTCATGGTGTG
TTACCGCAAAACCACTAAGCAGTATCGTTCTTTTTTCCACGAAATGGTTG
CGGAGGAGCCAAAGCTGGGAGAGCTACGTGCTTTTGGACAAGATGGAGAA
AAAGCAATCTTTGACGCTCACAGCAAAGAGTTCCCATTTGCCATTAGTTT
CATTTGTTCCATTCATATCAAGGGTAATATGGAAGAGTATATCAAATCAA
CACTCCATCTGAGTGACCAGTTCTATGATGTAGTGATCGCAGATGTCTTT
GGTACTGATACTCGTGAGGGGCTGTACCATGCATGCTATCGGGCTGAATT
TGATGAAAATTTGGCACGGTTGAAAACTAAATGGAACAACCTCGAAACAG
AAGAACGGAGATCAAAGAATGATCAGAGTCGACCTGCTTTTTTCAAATAT
TTCGAAAAAAACAAGAAAGAGATTGTATACAACTACTGCAGGCGATTGCT
GTTAGTTCAGGCAAATGTCTACCAGCACAATCAATTTTCAACAAATTCTA
CAGAATCAATCAACAAGGCGATTAAAGTCTGGACAGACAATCACAAGGAC
GATCTTCCAGGTTTTATGGTGGCTATTCATGATTTCATCCAGCACCAGTA
CAGTGAAATGAAGAAACCGCTGCTGAACAAACTTTCTGATACAATGATGG
TGAATCCCGGATACCGAGAACATGTTGTGTCTGGTTATGACAAAAAATCA
GGTATTTGTTGATGAAAACACGCCCACGGTTATACTCTACACAAAAGAAC
AAGTCGATTCTCTTGCAAAATTTTGCACTCCACCTGAAAACGTGCAATGT
TCAGTATTAAACTGTGATATGACATTCAATCTCGGTGATTTTTGGGTCGT
AATTACGACTTTCTCAAATTTAATGGTTTATTCCAAAAGGTATGGAAGAC
CTATAACTGCTATTGGCCCTGTCATGGTGTGTTACCGCAAAACCACTAAG
CAGTATCGTTCTTTTTTCCACGAAATGGTTGCGGAGGAGCCAAAGCTGGG
AGAGCTACGTGCTTTTGGACAAGATGGAGAAAAAGCAATCTTTGACGCTC
ACAGCAAAGAGTTCCCATTTGCCATTAGTTTCATTTGTTCCATTCATATC
AAGGGTAATATGGAAGAGTATATCAAATCAACACTCCATCTGAGTGACCA
GTTCTATGATGTAGTGATCGCAGATGTCTTTGGTACTGATACTCGTGAGG
GGCTGTACCATGCATGCTATCGGGCTGAATTTGATGAAAATTTGGCACGG
TTGAAAACTAAATGGAACAACCTCGAAACAGAAGAACGGAGATCAAAGAA
TGATCAGAGTCGACCTGCTTTTTTCAAATATTTCGAAAAAAACAAGAAAG
AGATTGTATACAACTACTGCAGGCGATTGCTGTTAGTTCAGGCAAATGTC
TACCAGCACAATCAATTTTCAACAAATTCTACAGAATCAATCAACAAGGC
GATTAAAGTCTGGACAGACAATCACAAGGACGATCTTCCAGGTTTTATGG
TGGCTATTCATGATTTCATCCAGCACCAGTACAGTGAAATGAAGAAACCG
CTGCTGAACAAACTTTCTGATACAATGATGGTGAATCCCGGATACCGAGA
ACATGTTGTGTCTGGTTATGACAAAAAATCAGCTGACGAAAAGAACCGTG
TATTGACAAGAATTCCCTGTTCTATCCCACTCAAGGAGATCTCTGTGCCA
ATTATAGCAAGTGCAACAGAAGTTGTTGATCAAGAGCCAGAGTTATTTGA
TTTAAGTCTTTTGGAGGAACACATGTCTGGAACCATTATTCAAAATATTG
AACAAAAAGCCAACCGGATCAAAGCTGACGAAAAGAACCGTGTATTGACA
AGAATTCCCTGTTCTATCCCACTCAAGGAGATCTCTGTGCCAATTATAGC
AAGTGCAACAGAAGTTGTTGATCAAGAGCCAGAGTTATTTGATTTAAGTC
TTTTGGAGGAACACATGTCTGGAACCATTATTCAAAATATTGAACAAAAA
GCCAACCGGATCAAAGGTAAAATGAGAGATGGTTTTACAGGACCCAAGTC
GAGGATTTTTGGGAGTGAAAATGGAACTGATGTGTACTTTGTCAATGCCA
CTGCAAATGGAAATTTCACCTGTACATGTTTGATGTTCAAGACTTACAGC
GTCTGTTCCCATTCGCTTCTTTCTGCTCATGACAACAAATGCCTGCAACA
GTTCATCAAGTTGTCATTGAAAAAACCAACGAAATTAACACCCGCTGCTA
CCTTTGGTGCAAATAAAAACGCAGGAAAAAAGCCAAATCAGTCGGTTCGC
TCAAGGAAGAGGAAATCAACGACTGCTGAAACTGTGCCTCAAAAACGGAT
GACTCTTGATGAAGTCTTGAAAGATACAGAAGCGGATGAAGAGGTGGTAA
AATGAGAGATGGTTTTACAGGACCCAAGTCGAGGATTTTTGGGAGTGAAA
ATGGAACTGATGTGTACTTTGTCAATGCCACTGCAAATGGAAATTTCACC
TGTACATGTTTGATGTTCAAGACTTACAGCGTCTGTTCCCATTCGCTTCT
TTCTGCTCATGACAACAAATGCCTGCAACAGTTCATCAAGTTGTCATTGA
AAAAACCAACGAAATTAACACCCGCTGCTACCTTTGGTGCAAATAAAAAC
GCAGGAAAAAAGCCAAATCAGTCGGTTCGCTCAAGGAAGAGGAAATCAAC
GACTGCTGAAACTGTGCCTCAAAAACGGATGACTCTTGATGAAGTCTTGA
AAGATACAGAAGCGGATGAAGAGGTG

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_039238	XLOC_039238-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000192_pilon	genome	sc0000192_pilon:565286..570320 -

Properties


Property Name	Value
Aaloc	2086-2463:379
Aaloc	1894-2082:950
Aaloc	961-1890:2193
Aaloc	262-960:3516
Aaloc	184-258:3756
Aaloc	91-180:4147
Aaloc	25-87:4540
Aaloc	1-21:5036

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XLOC_039238 (mRNA) -