|
|
Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000041_pilon:396928..401019- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_039085 ID=XLOC_039085|Name=XLOC_039085|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4092bp|location=Sequence derived from alignment at sc0000041_pilon:396928..401019- (Clytia hemisphaerica_ch_hm2_pilon)
ATGAATATTCCCTCCTCTGGTACCACTAGTACCAACCAAGACATTTTGTT
TATCGACCGAAAATCACCCACTGATAGTTTATGCAGCAATGATAGTCTCC
ATGAATCACCTTTGGAACAAAAATTGCTTCGTAGTAGTTTGAAAGGATCC
TCAGCATTAAAAATGGCTTCTTCATCAACGAAAAGTAACTTTTTCAGATA
GCGTCGAATTTAATGATGGTGATGTCAAACCAGTGTTTACTGCAATGTCA
GCTAGAGTTCCTTTATACCAACGTCGCGTCGAGAATACTAAACCAGAACC
TTCTACACAAATTACTCCATCGCCAAGCTTTACCAAAGTTGAAACGCCCT
CAATTACTACTGAACAGTTACTGGACCAATTAAGACAAGATGCTCTATTG
CCTAAATATCCCTCAAACGAGGATTTCTGTTATCCTGACAACGTTCCTAT
AGCCAATCAACCTTCAGAAAAGGCCATGATTACAGACCATTCACCCAATA
CTCAAATCAACGCCATTGAAAATTCATCCAACAATGATACAAGTTTCGCA
GATTCACTCATTGATAGTATCGAATCTGATGATACAGAAGAGCCTGATAA
GCCACAAGTGCCAATAATCTCTTCAGCTTCACAATCAACAAACGTCACCA
CAAATACGATCTCACCACCACCTTCAGTTACTTACGTTCCCAGTCACACC
ACGCTATCGTATGTGCCGAACTTTGTACCTCGAAACACAGCAACAATCAC
AAATCCATATCCTGGAAAGTCAAATATTTTCACACCTTCTCGACCCTCAA
ACTATGTTACCAAGCAAGAAAATCTAAACAATCCTACCACGACAAGCACC
ACTTCACATAAACAAGTGGACGATCAATTTCGCAATGAAAGCTACAGTCA
ACCTCAACAGAAAACCGATACTAATACTATTGAAAAGTATCAAATGAAAT
CACTTGGGAATAAATATGATCAATCGATGCAAAATCATAGAGCTTTCGAA
CAGCCACCGTTTTCAACTCCAGTTGCTAAAAATACAACTCATTCAGACCA
ATTTTCACATCAAAGTCATCAGAACTATTTCTCCTATGTTAATCACAATC
CAGTTCATAATTCGAATTCCAATGTTATTAAAATTCACTCAGATACTGTT
AAACCTTATCTTTCCGATCTCTTACTCGAAGATCGAAACAATATTTCTGA
AAAGCAATTTGAAAAGCAAAGCTATTCAGATGATGACAATGATAATGATG
AGCCAGTGTTTGACCAAGAACTAGATACTCAAGAAGACGAGTTCTTTAAA
ACCATAGAAGCAAGTTTAGCGAGTGTAACTTTTAATAGTGTCAATAATAA
TAAAGAGAAACCTACACAGGACGAAATGAACAAAAGGCCAAAAAATAAGC
CGCACGGCGAAACAGAATCAGATTCTCACATAGAATCACACATAATTCCG
ACAGACAGTGAGAAGATTTCTACAGCTGTGAAAGATGGTACTTCTATCCC
TGTTCGAGTACATTCAGGGAACGTCCGTAGAGGTCGCATTATAGTGAGCG
CTAATGAAAAGAAAAGGAGAACAGTTAGTCATTTCTCACCACATCCTCCA
CCAATCTCCAAAAATGAAAGTAAAGTAGATTTTAAGTCTACCTCAGCTCC
AAAGAAAACCAACAAAGAGACTACACAATCTAAGAAACATCCAAGTTCTC
CTTCTACCAACGCTAAGAAGACACCAACTAAGAGAAACTCTTTCAGTTCA
GGTCACCACATGCGTCAAGTCTATTCACCACCCACTACAACGACGCTGAA
TAAATATTCACCACGCTCGAAAACAACCCCAAGTAAAGACACCAACAAAC
CTTACCGCGGTACATCTCCAAAATCAAAGCCGGTTCAAAAGCAATCATCC
TTCACAATTACAAAGAGAGATCATAACAACAATTTTTTAATAAATAACAA
CAATAATAACATTGCGTATTATAACGATCATGTGAAACAAAAACAACCCT
CGCCTCAAACACCTCGGAAAAATAGTGATTATTTATCAAAACAGAACCGT
ATAGCACTCGACAAAACCCCAACAGACGAAGAAATCAATAAACTATGGGC
AAATGTACGGAACTGCTTAAGTACGGAAGCACCCGAGCAAGCTTATTCCG
ATACTGCATTCATAGCACCAAAAAGGGTCCATCACCAGCGTACTTTCTCC
GGTTCTCTTGTGCGGCGCGTCAGTAATGACTCCTCTTTATACCAAGGTGG
TGGAAATCACCATCAAGCCACAAGCAATCGAAGATACGGTTCCCATGAAG
CATTAAATCGACCCAACTCCAATTCCAGCTCTAGTTCAAGTGCGTCTAGT
TTTTCCAACCGACACGCTCTTTTACCACAGAGATCGAATCGAATTTTGTC
TCCGAAACTGGTGATCGACAGAAACAGTAACTTGAGCAATAACAGTAACA
CGTATTTTACCAGAAAGAAAGATCACGCGCTTTCTTCACACCATAAGAAA
GATAAAGAAGGTAAGACTTCTTCATTTTGCTTGAATTTCTTTGTATTTTC
TAATATAGACGTATTGTCTGTATTAAGAAGGGGAATTCTGTTAATTATTG
TCAACTTTCCTTACTTATGTCCTTCCCATAGGGGCAGTTTGGGATTATTA
CAATGTATTTTCCTTTTAAAGTGTATATTCAGTCTTTTTCAGGGTTTAAG
AAACGTAAATACCTTGAGAACCGGCATTTAATGTTTGGGAATGCTAAGAA
ATCATTTTGTCCCGCACTATCAACTTGGTTACAACTTTCCAGTCTCACCT
TTTTTATCATTTTGCTTTACACATAGTTACGGAAAGTATGGCAACATTTT
TAGCGTTAGAAGAGCTTTGCAATGAACAATCTCTGACACCACGACAAACG
GAAGCTGTCTTCAAAGTCTCCAAAAGTTTGATAAAGAAACAAATGCATGC
AGAGGAATCCACTAAAGGTAACGTCTTCATTTTTTTCTTATTATCAATAA
TAGTCAAATGATCAAAAAAAGCTGTCGAGTGTTTTCAAAAAAAGCTGTCG
AGTGTTTTGAACAAGTTTAACAGGTTGACAGTCATTGGCTAAAAGGATAA
TCGGCTATTTTTCATTTTCATGAAGAAAACTTTCACCATAATGTTGCATT
GCAATTAAAAGTTATCAAAAAATAGATGTAGAAATTTTCTTTTCTGTGAT
ATGACGTTGATTTTTCACTTCATTTGCAGTCGAGATAATAACGTCAAAAA
CCTGTTGACATTGTCGGAATGGCTTGATTTTGAAATCGCCTGAATCTATT
TTAGCTATAACTGTAAATTTCCTAGATATGGTGTTGACGAGACTTTTTCT
CAGAAATGGCTGCTCTATCTCATTCCTCCTAACTAAAAAGAATCTATTTT
TCATAAAACCTTTAAACGTAAAACGTTTTGACTTTCAAGTAAACATTCCA
TTCCTAAAAAAATCAATTGACGTATCCACGAAACATCAAGCTTTTGATTG
GTCATCTCTCCATTTTTTTCAATTCATCGTTCTCTTTGCAGGACTGTCAG
CACTGTCAATAGAAGAACGTAAAGTGATGGACTCTCTTGATCGAATCAAC
GATAAACTAAAGAGTAAGTTCTCAACTTCATTTGAGCTAGAATCTAGGAA
TGTCTGTGTGTTTGTGTGTATGTTCCAAGGCTTTGGGGCAGCCTGGAGAC
TTCAAAAATTATCGGATTTGGCTGAAATTTGGCACACTTGATCCTTGGGT
GAATATCTGGGGTGTTTTTTTTCATTTTTCAAAAATCTCGATTTTTGAGT
TTTTAAGTTTTAAAGCTAGTTTGTTTTGCTACAATCGGGTCTTTGAATAA
TCTGAAGCTACTGAAGTTGAGTCCAGTGCGTTGCGCAAGTTCGACTATTT
TTCATAGTAGGGTTTAAGAAAAACATCATGAGATGTCAAAAGGGTGATGA
TTTTATCAAGGGTAAGCTGGGGGAAGAATCAAATCAACGCTGAATAGAGT
CTGACAAAACTATATTTTTTAGCATATTTATCATTTCGTTATTTCTAGGG
CAAGACGAGTTGCAAAGAACATTAAGTGCAAAAGGGAGGTGA Coding sequence (CDS) from alignment at sc0000041_pilon:396928..401019- >XLOC_039085 ID=XLOC_039085|Name=XLOC_039085|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5534bp|location=Sequence derived from alignment at sc0000041_pilon:396928..401019- (Clytia hemisphaerica_ch_hm2_pilon)
ATGAATATTCCCTCCTCTGGTACCACTAGTACCAACCAAGACATTTTGTT
TATCGACCGAAAATCACCCACTGATAGTTTATGCAGCAATGATAGTCTCC
ATGAATCACCTTTGGAACAAAAATTGCTTCGTAGTAGTTTGAAAGGATCC
TCAGCATTAAAAATGGCTTCTTCATCAACGAAAAGTAACTTTTTCAGATA
GCGTCGAATTTAATGATGGTGATGTCAAACCAGTGTTTACTGCAATGTCA
GCTAGAGTTCCTTTATACCAACGTCGCGTCGAGAATACTAAACCAGAACC
TTCTACACAAATTACTCCATCGCCAAGCTTTACCAAAGTTGAAACGCCCT
CAATTACTACTGAACAGTTACTGGACCAATTAAGACAAGATGCTCTATTG
CCTAAATATCCCTCAAACGAGGATTTCTGTTATCCTGACAACGTTCCTAT
AGCCAATCAACCTTCAGAAAAGGCCATGATTACAGACCATTCACCCAATA
CTCAAATCAACGCCATTGAAAATTCATCCAACAATGATACAAGTTTCGCA
GATTCACTCATTGATAGTATCGAATCTGATGATACAGAAGAGCCTGATAA
GCCACAAGTGCCAATAATCTCTTCAGCTTCACAATCAACAAACGTCACCA
CAAATACGATCTCACCACCACCTTCAGTTACTTACGTTCCCAGTCACACC
ACGCTATCGTATGTGCCGAACTTTGTACCTCGAAACACAGCAACAATCAC
AAATCCATATCCTGGAAAGTCAAATATTTTCACACCTTCTCGACCCTCAA
ACTATGTTACCAAGCAAGAAAATCTAAACAATCCTACCACGACAAGCACC
ACTTCACATAAACAAGTGGACGATCAATTTCGCAATGAAAGCTACAGTCA
ACCTCAACAGAAAACCGATACTAATACTATTGAAAAGTATCAAATGAAAT
CACTTGGGAATAAATATGATCAATCGATGCAAAATCATAGAGCTTTCGAA
CAGCCACCGTTTTCAACTCCAGTTGCTAAAAATACAACTCATTCAGACCA
ATTTTCACATCAAAGTCATCAGAACTATTTCTCCTATGTTAATCACAATC
CAGTTCATAATTCGAATTCCAATGTTATTAAAATTCACTCAGATACTGTT
AAACCTTATCTTTCCGATCTCTTACTCGAAGATCGAAACAATATTTCTGA
AAAGCAATTTGAAAAGCAAAGCTATTCAGATGATGACAATGATAATGATG
AGCCAGTGTTTGACCAAGAACTAGATACTCAAGAAGACGAGTTCTTTAAA
ACCATAGAAGCAAGTTTAGCGAGTGTAACTTTTAATAGTGTCAATAATAA
TAAAGAGAAACCTACACAGGACGAAATGAACAAAAGGCCAAAAAATAAGC
CGCACGGCGAAACAGAATCAGATTCTCACATAGAATCACACATAATTCCG
ACAGACAGTGAGAAGATTTCTACAGCTGTGAAAGATGGTACTTCTATCCC
TGTTCGAGTACATTCAGGGAACGTCCGTAGAGGTCGCATTATAGTGAGCG
CTAATGAAAAGAAAAGGAGAACAGTTAGTCATTTCTCACCACATCCTCCA
CCAATCTCCAAAAATGAAAGTAAAGTAGATTTTAAGTCTACCTCAGCTCC
AAAGAAAACCAACAAAGAGACTACACAATCTAAGAAACATCCAAGTTCTC
CTTCTACCAACGCTAAGAAGACACCAACTAAGAGAAACTCTTTCAGTTCA
GGTCACCACATGCGTCAAGTCTATTCACCACCCACTACAACGACGCTGAA
TAAATATTCACCACGCTCGAAAACAACCCCAAGTAAAGACACCAACAAAC
CTTACCGCGGTACATCTCCAAAATCAAAGCCGGTTCAAAAGCAATCATCC
TTCACAATTACAAAGAGAGATCATAACAACAATTTTTTAATAAATAACAA
CAATAATAACATTGCGTATTATAACGATCATGTGAAACAAAAACAACCCT
CGCCTCAAACACCTCGGAAAAATAGTGATTATTTATCAAAACAGAACCGT
ATAGCACTCGACAAAACCCCAACAGACGAAGAAATCAATAAACTATGGGC
AAATGTACGGAACTGCTTAAGTACGGAAGCACCCGAGCAAGCTTATTCCG
ATACTGCATTCATAGCACCAAAAAGGGTCCATCACCAGCGTACTTTCTCC
GGTTCTCTTGTGCGGCGCGTCAGTAATGACTCCTCTTTATACCAAGGTGG
TGGAAATCACCATCAAGCCACAAGCAATCGAAGATACGGTTCCCATGAAG
CATTAAATCGACCCAACTCCAATTCCAGCTCTAGTTCAAGTGCGTCTAGT
TTTTCCAACCGACACGCTCTTTTACCACAGAGATCGAATCGAATTTTGTC
TCCGAAACTGGTGATCGACAGAAACAGTAACTTGAGCAATAACAGTAACA
CGTATTTTACCAGAAAGAAAGATCACGCGCTTTCTTCACACCATAAGAAA
GATAAAGAAGATGAATATTCCCTCCTCTGGTACCACTAGTACCAACCAAG
ACATTTTGTTTATCGACCGAAAATCACCCACTGATAGTTTATGCAGCAAT
GATAGTCTCCATGAATCACCTTTGGAACAAAAATTGCTTCGTAGTAGTTT
GAAAGGATCCTCAGCATTAAAAATGGCTTCTTCATCAACGAAAAGTAACT
TTTTCAGATAGCGTCGAATTTAATGATGGTGATGTCAAACCAGTGTTTAC
TGCAATGTCAGCTAGAGTTCCTTTATACCAACGTCGCGTCGAGAATACTA
AACCAGAACCTTCTACACAAATTACTCCATCGCCAAGCTTTACCAAAGTT
GAAACGCCCTCAATTACTACTGAACAGTTACTGGACCAATTAAGACAAGA
TGCTCTATTGCCTAAATATCCCTCAAACGAGGATTTCTGTTATCCTGACA
ACGTTCCTATAGCCAATCAACCTTCAGAAAAGGCCATGATTACAGACCAT
TCACCCAATACTCAAATCAACGCCATTGAAAATTCATCCAACAATGATAC
AAGTTTCGCAGATTCACTCATTGATAGTATCGAATCTGATGATACAGAAG
AGCCTGATAAGCCACAAGTGCCAATAATCTCTTCAGCTTCACAATCAACA
AACGTCACCACAAATACGATCTCACCACCACCTTCAGTTACTTACGTTCC
CAGTCACACCACGCTATCGTATGTGCCGAACTTTGTACCTCGAAACACAG
CAACAATCACAAATCCATATCCTGGAAAGTCAAATATTTTCACACCTTCT
CGACCCTCAAACTATGTTACCAAGCAAGAAAATCTAAACAATCCTACCAC
GACAAGCACCACTTCACATAAACAAGTGGACGATCAATTTCGCAATGAAA
GCTACAGTCAACCTCAACAGAAAACCGATACTAATACTATTGAAAAGTAT
CAAATGAAATCACTTGGGAATAAATATGATCAATCGATGCAAAATCATAG
AGCTTTCGAACAGCCACCGTTTTCAACTCCAGTTGCTAAAAATACAACTC
ATTCAGACCAATTTTCACATCAAAGTCATCAGAACTATTTCTCCTATGTT
AATCACAATCCAGTTCATAATTCGAATTCCAATGTTATTAAAATTCACTC
AGATACTGTTAAACCTTATCTTTCCGATCTCTTACTCGAAGATCGAAACA
ATATTTCTGAAAAGCAATTTGAAAAGCAAAGCTATTCAGATGATGACAAT
GATAATGATGAGCCAGTGTTTGACCAAGAACTAGATACTCAAGAAGACGA
GTTCTTTAAAACCATAGAAGCAAGTTTAGCGAGTGTAACTTTTAATAGTG
TCAATAATAATAAAGAGAAACCTACACAGGACGAAATGAACAAAAGGCCA
AAAAATAAGCCGCACGGCGAAACAGAATCAGATTCTCACATAGAATCACA
CATAATTCCGACAGACAGTGAGAAGATTTCTACAGCTGTGAAAGATGGTA
CTTCTATCCCTGTTCGAGTACATTCAGGGAACGTCCGTAGAGGTCGCATT
ATAGTGAGCGCTAATGAAAAGAAAAGGAGAACAGTTAGTCATTTCTCACC
ACATCCTCCACCAATCTCCAAAAATGAAAGTAAAGTAGATTTTAAGTCTA
CCTCAGCTCCAAAGAAAACCAACAAAGAGACTACACAATCTAAGAAACAT
CCAAGTTCTCCTTCTACCAACGCTAAGAAGACACCAACTAAGAGAAACTC
TTTCAGTTCAGGTCACCACATGCGTCAAGTCTATTCACCACCCACTACAA
CGACGCTGAATAAATATTCACCACGCTCGAAAACAACCCCAAGTAAAGAC
ACCAACAAACCTTACCGCGGTACATCTCCAAAATCAAAGCCGGTTCAAAA
GCAATCATCCTTCACAATTACAAAGAGAGATCATAACAACAATTTTTTAA
TAAATAACAACAATAATAACATTGCGTATTATAACGATCATGTGAAACAA
AAACAACCCTCGCCTCAAACACCTCGGAAAAATAGTGATTATTTATCAAA
ACAGAACCGTATAGCACTCGACAAAACCCCAACAGACGAAGAAATCAATA
AACTATGGGCAAATGTACGGAACTGCTTAAGTACGGAAGCACCCGAGCAA
GCTTATTCCGATACTGCATTCATAGCACCAAAAAGGGTCCATCACCAGCG
TACTTTCTCCGGTTCTCTTGTGCGGCGCGTCAGTAATGACTCCTCTTTAT
ACCAAGGTGGTGGAAATCACCATCAAGCCACAAGCAATCGAAGATACGGT
TCCCATGAAGCATTAAATCGACCCAACTCCAATTCCAGCTCTAGTTCAAG
TGCGTCTAGTTTTTCCAACCGACACGCTCTTTTACCACAGAGATCGAATC
GAATTTTGTCTCCGAAACTGGTGATCGACAGAAACAGTAACTTGAGCAAT
AACAGTAACACGTATTTTACCAGAAAGAAAGATCACGCGCTTTCTTCACA
CCATAAGAAAGATAAAGAAGTTACGGAAAGTATGGCAACATTTTTAGCGT
TAGAAGAGCTTTGCAATGAACAATCTCTGACACCACGACAAACGGAAGCT
GTCTTCAAAGTCTCCAAAAGTTTGATAAAGAAACAAATGCATGCAGAGGA
ATCCACTAAAGTTACGGAAAGTATGGCAACATTTTTAGCGTTAGAAGAGC
TTTGCAATGAACAATCTCTGACACCACGACAAACGGAAGCTGTCTTCAAA
GTCTCCAAAAGTTTGATAAAGAAACAAATGCATGCAGAGGAATCCACTAA
AGGACTGTCAGCACTGTCAATAGAAGAACGTAAAGTGATGGACTCTCTTG
ATCGAATCAACGATAAACTAAAGAGACTGTCAGCACTGTCAATAGAAGAA
CGTAAAGTGATGGACTCTCTTGATCGAATCAACGATAAACTAAAGAGGCA
AGACGAGTTGCAAAGAACATTAAGTGCAAAAGGGAGGTGAGGCAAGACGA
GTTGCAAAGAACATTAAGTGCAAAAGGGAGGTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000041_pilon | genome | sc0000041_pilon:396928..401019 - |
Properties
| Property Name | Value |
|---|
| Aaloc | 2725-2766:43 |
| Aaloc | 2653-2721:550 |
| Aaloc | 2512-2649:1265 |
| Aaloc | 178-2508:3915 |
| Aaloc | 1-177:4093 |
|
