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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000329_pilon:25303..30469+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_038898 ID=XLOC_038898|Name=XLOC_038898|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5167bp|location=Sequence derived from alignment at sc0000329_pilon:25303..30469+ (Clytia hemisphaerica_ch_hm2_pilon)
CTGATCACCAACCTAGCAATGGTTTCTATGGGAGTGGAACTCACAGAACG
GCCAGATCTTCTGATCTTTTTGGTTGATGATCTTGGATATGGAGATGTTG
GATTCAATAAGGAAGGTGACTCGGGTAAGAAAACGAATAGACTAGCAAGC
CAGTCGGAATAGAACGATATCAGGCGGGAAAGGTGAAGCTAGGTAAGCGT
AAGAAATTGTCGGCTCTCTCGCTAACTTCTCTTCGTTCTCCTTATGTTAT
TCTAAGCAGCTCCCTTCCTGGCAAACGCACAACGCCGTTATTTCCGCCCT
TTGACATGATTGATTAGTAGACTAATTTGCTAGTCTAAGTATATAATTCT
AGGGTGTGGTTGCCAGAGTAATGCAAGGAGCCACAGGGAACAACCGAAAA
GACCTCGGGGTAACAAGCGAGCTTACGGAGAATAAAAATACTACATTATT
ATTTCAGATGGTTCAGGAGAAAGCCCGACCCCGAACATGGAcgctttttc
caaaaaaggaatTCGTTTTACAGACTACCATTCACCATATGCCGTGTGCA
CACCAAGTCGTGCTTCTTTGCTGACTTCAAGACTGGGTGCAAGAACGGGT
CTCTACAGGTAGGTATTGGTGAAACACAATCTCCATCTCTGTAGCTTATT
TACATATGAAGTCTCTTTAAGTTAAACCTCTATAACATAAATGTCTTCTG
GTAATTAAAACAGTGAGTATCGAATTATCCATTCGTACTGGAAATCTGAT
CCCTAAAGAGTGGTAACGGATATTAATTCTTTCTTTAGTCTTTTGAATGC
GAAGAGCATTGGAGGACTGCCAACCACGGAATACACTCTCTCTGAACACT
TGAAGAAGATTGATTACTCAACGTTCGCTATCGGGAAGTGGCATCTGGGA
CATCAAGACAACTACCATCCAAATGATCGAGGCTTTGACCATTACCTTGG
TGTACCATACAGTCTAGATATGGGATGTCTCGATTATCCAGGTTATTCAC
ATCCAGAACATTTGAGTTGCAAGCGAGACATCACTGACGAAGTTGCTATT
CCCCTGTATCGAGATAAAACTATTATTCAGCAACCTTTAGATTTGAGAAC
TCTTTCGGATATTTACTTCCAAGAATTTCAACAAAGAATGGaagaaattc
atcaaaagaAAACTAATTTCTTTGGTTACATCCCCTTCTCAAAGGTGCCG
CGACTCATTTTCTTCTCAGAGTTGTCGTTCAAATTTATTCGATTTTCACG
TTGACCTTCATTTACCCTGGACCAAGCGTTTTCCACTCTATTTGATCGAA
TTTTATGTTTAGTGAATTTTAGTGCTAGTATTAGGGTacagttttcaaaa
aactccgatcaaagatatTGCATGGCCGGGGTGAGAAACTTTGTCCAGAG
TATAGATCAGTGGATCAGTGGGTTTTAACATGTCGCCTCATTTAACGTCA
AACTTTATTATTGGTAGCGAGAAATAATATGGTTTGAAATGATGTTTCGG
GTCCTACAGATCACAAAATATGATGGAAACCTTGATTTTTACAATTgagg
cttgaaaatgaaagtaaagaaAGCTTAATGTTTGAGGAAAGTCATAACCT
TATCCAATACGCGCACAAACTACTCTGTTTATAGGTACACGTACCACTTG
GCTTTGCTGAACACTCTCCAAACGGCACTGCTTTTTCGGACAATTTGAAG
GAATTGGACATGAATTTCGGACGGATGATTCAAACAGTGAAGGATTTGGG
ATTGTTTGAGAATACAGTGATATGGTTGATCAGTGATAACGGCCCTTGGG
AACTAGAATGTCAATTTGCAGGTATTTGCATTTTCGTGTTTTTCTTGTTA
GCCAATGTTCTTTATTTGCATTCTTGAAAATACATAGCTATTATTTCTGT
ATTTCAGGGCAACCTGGAAAATTTCAAGGATtatggcaaaaaatgaaaac
tggaGGTAGGAAAGCTTCACTCGAGCACCTTTGAGCATCATTCTTAGCAT
TTCTGGTTACTTTTTTCAGAGAGCATTTAATATGTTACTGTTACACTGCT
ATGGTAACAATGAATAGTTTCCTGAATTCTATCGCTTTGCAAATCAATAC
AAAATATCCATCCAAGCTTTTTATTGTAACATACCACTGTTTGACCAATC
CCGTAGCTGCTTGCACCACTACTTAATACTATTGAAAGCAGTACAATCAC
GAACGCTATTAGAACCATAAAGAACGAACTAAGGGTCCGTGACCGACTTT
GCCGTTTAAGGTCATTTTAATTATTAGGTGGCGGAGGTACCAGTTGGAAA
GAAACCATCTGGGAAGGAGGACATCGCGTGCCAGCAGTCGTTACATGGCC
ACAATACATCAAAGAGGGGAGGGTATCTGACGCCTTGATCAGTGGTTTAG
ATATCATGCCCACAATGGCAAGTTTGATGGGGTTTGAATTACCAACTGAT
AGACATTACGATGGAGAGGACTTGTCTCGTGTTTTGAAAGATGGATCGGA
TGAAGGGCGACTGGTAGGTCattaggctgcacacatcccctctgataagt
tttgatatagaactaatttggggatgcatgcagcctagtAGGTCATATCA
CTTCCCTGTCCCTACTGATATATTACTCAGAGCCAATATCCAATCATAAT
CGCTAGTCATGGTATCTATTTGTTTTAGAAGATTTTCGATAACTCCTGTC
AGTTTGGTGTTGTATACAAGTCGTGCCTTTTCTAATCCCAGCTTTCCTCT
GCAAAATAAAGGGTAGATTGAAAAATACTTCCTTCCATTTAACAAACATC
TCAgctaatttttagcattttttatacATGCGTAGCTAATGAGCAGAACA
TTTATAATTATTAAAAGGTTTTGTGAAGGGATGAAGCTAGATGTTTGATA
AGATAAGAATAATTGATCGTTAATTTAATGACAGTTGGATGATAATCTTT
CAGACAGAGAGAATCATGCTGTTAAACACGTGATTGGTACAGTTTTCACA
TCTCTCCacttctttctctctttttagaCGCTTTTCCATCCGCGTTCGAA
CGCAAGGGATAACGAGATCACTGCCGTCCGGTGGAAAAATTATAAAGCTG
TCTTCAAGTCCGGTAAGTTTCCCTCGTTGTATTTCCTGCCTTGTGCGTTC
AATATCCAAGGGGATGGATAATTGCCACTTAACGTAAGCTTTAACATCCC
CTTTATATCCCTTTTAGTGGTCAAGTGTGAGTTGTGACCAAGCATTTTCA
TCTAACAGTTCCAAGAACTAttccataatattttgataactgAATAAAGA
TTCGctattcaaaaattgattttggtatttgaacataaaagttatatctc
aggttccttaacactttaacaaagaattgccttttataaattgcttttta
atcaaatcccttaagagtaattaagaatttaattgcaaaaatgacgttat
gaactttaaaaagatgttaataatatgttgcatcaccctcttttacaaaa
agtgcttagttttaatgggtaaataacttttttgtttcaaaatttcttta
ctctgtccgcaaagaattgaactattttaaattttgcggaaaatttttgt
aaaaagatgtgtcaaaagttatgactgttttttaagcaaaatccaggtga
aaaattgatgaaaaaccactattttgaagatttcgagacaaagaagcatt
tacaaatattttgcgcaaaaatatttattgttcgGTCAAGAATGTGTGCT
GGAAATGTGAGCCAGTGAAAATACaaagttgaaattgaagaaattctgAT
TATTGTCATTTGTCATTAGTCATATTGATGTTGACTCTCTCATAGTCAAC
TTGTGACTGAGTAGCGAGTGAGAAAAAGTTGGccttttttataataaatt
tgaaaaaaacaaaaaactagtttgacaagatataaaaacaatgaatatgT
AACACTCTTGAGAAATCaaatgataattaaataaagaTGCGTGTGAAATA
ATTAATTACTAGATAATGACTAAATGACAAAATGATAATAACTGACaaag
tatttgaaataattgataacatAGATAAATGACTTTAAAACATAGAACAA
AACAAACGACGCATGAAACACGAGAATGCACAAGAGAGAGACGCAAAGGA
CGCTGaaaaagaaagcactgggaaaacaaaggacgctggggacaaaaaga
cactgacaaaaacaagacaCTGAAAATTGaactataaaatatttttgctt
ttttaaatatactaaaaatttgatgaatcaCATTACAAAGATGTTTTTTC
TTcaccgaaactaagctcttcaaagttgaaatactcttcctcgcaaaagt
ctccattttcttcttcatcaaatttttttcaatgcaatttttgaattttc
agattaaggaatagtttgtctaacagaaaatgtataacatgccatagttt
tgttggttacatcagtcagaaaacacattttaaacacggcaattatgaaa
aattcactatggtcagagcccacAAAAACTGATTCTAAATTCTTTTCGGG
GAAAGCTTTCGAGaaaaaaaCTGATCAAAAGCTTGCCAAAATATTCTCAG
AATAACATTTATCTTGATTCATATTTTTGAAAGGAGAAAGGAGAAATCAA
ATGAAACTAACATAGAAATGAGTATTTAAGAGACTCaacagggcccacgc
catgaaaTTGAGAAAGAGAGAGGAGAAATGGCCTTTGTGTGGGAGGGGGG
Caatgaatatagagtctaaggtggcgcaaccaaaaattttacttttcaaa
aaagtggtGCCCTGTTGAATCTCTTTACTTTCAATAAAACAACTTTAATT
TTTATCAAAGTGTATTTTCTACAGGTGGTTTGAGGCTTCTTGATTGTCAC
TTCGGATCATCGATGGCCAGGACGTACGATCCGCCATTATTGTTTGATCT
GAAGGACGACCCTTCAGAAGCAAAACCTTTGGATACAACCGACCCCTTCA
ATAAAGCATTAGTCAGTCACTTGAAAGACTTATTAGAGAAATTGAATGAA
GATATTGCTGGTGATTTTAAAAGCAAGTTTGATGATCGGCAAGACTCATC
AGTGATGCCGTGTTGTAACGCACGAAATAGACATTGCCGGTGTCAACCTC
TGATTGGTTCAGattaa Coding sequence (CDS) from alignment at sc0000329_pilon:25303..30469+ >XLOC_038898 ID=XLOC_038898|Name=XLOC_038898|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3060bp|location=Sequence derived from alignment at sc0000329_pilon:25303..30469+ (Clytia hemisphaerica_ch_hm2_pilon)
CTGATCACCAACCTAGCAATGGTTTCTATGGGAGTGGAACTCACAGAACG
GCCAGATCTTCTGATCTTTTTGGTTGATGATCTTGGATATGGAGATGTTG
GATTCAATAAGGAAGGTGACTCGGCTGATCACCAACCTAGCAATGGTTTC
TATGGGAGTGGAACTCACAGAACGGCCAGATCTTCTGATCTTTTTGGTTG
ATGATCTTGGATATGGAGATGTTGGATTCAATAAGGAAGGTGACTCGGAT
GGTTCAGGAGAAAGCCCGACCCCGAACATGGAcgctttttccaaaaaagg
aatTCGTTTTACAGACTACCATTCACCATATGCCGTGTGCACACCAAGTC
GTGCTTCTTTGCTGACTTCAAGACTGGGTGCAAGAACGGGTCTCTACAGA
TGGTTCAGGAGAAAGCCCGACCCCGAACATGGAcgctttttccaaaaaag
gaatTCGTTTTACAGACTACCATTCACCATATGCCGTGTGCACACCAAGT
CGTGCTTCTTTGCTGACTTCAAGACTGGGTGCAAGAACGGGTCTCTACAG
TCTTTTGAATGCGAAGAGCATTGGAGGACTGCCAACCACGGAATACACTC
TCTCTGAACACTTGAAGAAGATTGATTACTCAACGTTCGCTATCGGGAAG
TGGCATCTGGGACATCAAGACAACTACCATCCAAATGATCGAGGCTTTGA
CCATTACCTTGGTGTACCATACAGTCTAGATATGGGATGTCTCGATTATC
CAGGTTATTCACATCCAGAACATTTGAGTTGCAAGCGAGACATCACTGAC
GAAGTTGCTATTCCCCTGTATCGAGATAAAACTATTATTCAGCAACCTTT
AGATTTGAGAACTCTTTCGGATATTTACTTCCAAGAATTTCAACAAAGAA
TGGaagaaattcatcaaaagaAAACTAATTTCTTTGGTTACATCCCCTTC
TCAAAGTCTTTTGAATGCGAAGAGCATTGGAGGACTGCCAACCACGGAAT
ACACTCTCTCTGAACACTTGAAGAAGATTGATTACTCAACGTTCGCTATC
GGGAAGTGGCATCTGGGACATCAAGACAACTACCATCCAAATGATCGAGG
CTTTGACCATTACCTTGGTGTACCATACAGTCTAGATATGGGATGTCTCG
ATTATCCAGGTTATTCACATCCAGAACATTTGAGTTGCAAGCGAGACATC
ACTGACGAAGTTGCTATTCCCCTGTATCGAGATAAAACTATTATTCAGCA
ACCTTTAGATTTGAGAACTCTTTCGGATATTTACTTCCAAGAATTTCAAC
AAAGAATGGaagaaattcatcaaaagaAAACTAATTTCTTTGGTTACATC
CCCTTCTCAAAGGTACACGTACCACTTGGCTTTGCTGAACACTCTCCAAA
CGGCACTGCTTTTTCGGACAATTTGAAGGAATTGGACATGAATTTCGGAC
GGATGATTCAAACAGTGAAGGATTTGGGATTGTTTGAGAATACAGTGATA
TGGTTGATCAGTGATAACGGCCCTTGGGAACTAGAATGTCAATTTGCAGG
TACACGTACCACTTGGCTTTGCTGAACACTCTCCAAACGGCACTGCTTTT
TCGGACAATTTGAAGGAATTGGACATGAATTTCGGACGGATGATTCAAAC
AGTGAAGGATTTGGGATTGTTTGAGAATACAGTGATATGGTTGATCAGTG
ATAACGGCCCTTGGGAACTAGAATGTCAATTTGCAGGGCAACCTGGAAAA
TTTCAAGGATtatggcaaaaaatgaaaactggaGGGCAACCTGGAAAATT
TCAAGGATtatggcaaaaaatgaaaactggaGGTGGCGGAGGTACCAGTT
GGAAAGAAACCATCTGGGAAGGAGGACATCGCGTGCCAGCAGTCGTTACA
TGGCCACAATACATCAAAGAGGGGAGGGTATCTGACGCCTTGATCAGTGG
TTTAGATATCATGCCCACAATGGCAAGTTTGATGGGGTTTGAATTACCAA
CTGATAGACATTACGATGGAGAGGACTTGTCTCGTGTTTTGAAAGATGGA
TCGGATGAAGGGCGACTGGTGGCGGAGGTACCAGTTGGAAAGAAACCATC
TGGGAAGGAGGACATCGCGTGCCAGCAGTCGTTACATGGCCACAATACAT
CAAAGAGGGGAGGGTATCTGACGCCTTGATCAGTGGTTTAGATATCATGC
CCACAATGGCAAGTTTGATGGGGTTTGAATTACCAACTGATAGACATTAC
GATGGAGAGGACTTGTCTCGTGTTTTGAAAGATGGATCGGATGAAGGGCG
ACTGaCGCTTTTCCATCCGCGTTCGAACGCAAGGGATAACGAGATCACTG
CCGTCCGGTGGAAAAATTATAAAGCTGTCTTCAAGTCCGaCGCTTTTCCA
TCCGCGTTCGAACGCAAGGGATAACGAGATCACTGCCGTCCGGTGGAAAA
ATTATAAAGCTGTCTTCAAGTCCGGTGGTTTGAGGCTTCTTGATTGTCAC
TTCGGATCATCGATGGCCAGGACGTACGATCCGCCATTATTGTTTGATCT
GAAGGACGACCCTTCAGAAGCAAAACCTTTGGATACAACCGACCCCTTCA
ATAAAGCATTAGTCAGTCACTTGAAAGACTTATTAGAGAAATTGAATGAA
GATATTGCTGGTGATTTTAAAAGCAAGTTTGATGATCGGCAAGACTCATC
AGTGATGCCGTGTTGTAACGCACGAAATAGACATTGCCGGTGTCAACCTC
TGATTGGTTCAGattaaGTGGTTTGAGGCTTCTTGATTGTCACTTCGGAT
CATCGATGGCCAGGACGTACGATCCGCCATTATTGTTTGATCTGAAGGAC
GACCCTTCAGAAGCAAAACCTTTGGATACAACCGACCCCTTCAATAAAGC
ATTAGTCAGTCACTTGAAAGACTTATTAGAGAAATTGAATGAAGATATTG
CTGGTGATTTTAAAAGCAAGTTTGATGATCGGCAAGACTCATCAGTGATG
CCGTGTTGTAACGCACGAAATAGACATTGCCGGTGTCAACCTCTGATTGG
TTCAGattaa
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000329_pilon | genome | sc0000329_pilon:25303..30469 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1240-1530:4877 |
| Aaloc | 1153-1236:3028 |
| Aaloc | 919-1152:2280 |
| Aaloc | 871-915:1910 |
| Aaloc | 682-867:1635 |
| Aaloc | 277-681:790 |
| Aaloc | 127-273:460 |
| Aaloc | 1-123:1 |
|
