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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000005_pilon:693713..697505+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_038892 ID=XLOC_038892|Name=XLOC_038892|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3793bp|location=Sequence derived from alignment at sc0000005_pilon:693713..697505+ (Clytia hemisphaerica_ch_hm2_pilon)
AACCACTGTAGAACTTATAAAGAACATTGGTATCGGCTCATGCAAACGTT
CCATAGCTCCGTCAAACGGAAGTTTATAATCTGCCTAAGAAGCTGTTTAC
CTTTTGCCATgaacactttttttatcattcaaattttcattcacGCGTTA
CACTGTCATCAAATTGAAAATGATCGATCGACCGAATTCAACCTTGCCAT
AGATGATTTTGAGTTCCTTGGAACCCCAATATTGAGTTTCTCTGGCGAAA
ATTACGGGAATGTGTTGCGTTGTGTTCGTCAATGTGTTTCATTGTCGCCT
GTTTGTCGTGCGATCaatgtcaaaaaagaaatgCAGGTTTGCCGAATGTT
TGATCACGTGATTGATGATGATGTCcaaggaaatcaaaatcaaacgaAAT
GCACCAAAGGTTGGCAATATTTTGGTGTTCAAAATCAGAAGAAGGATGAT
GAGAAATCATCTATTGAGGTAATCATTACATACTTGTATCACCCGTACAC
GATATGGGACCCCCACAATACGAACTACATCGCTTCTTAGACTTTGTATA
TATCACATAGTACCAACATAGCTGTGACCTCACTAGGTCACTTTGACTTG
AAGATATCGCTTGTTAAAACTTTGATTGTAAGTGTGTTTTATTTATCAGG
AGGAACTACCAGCACGACCATCTCTGTCACGCAACCCCCGACCATCTCTG
TCACACAACCCCCGACCATCTCTGTCACGCAACCCCCGACCATCTCTGTC
ACGCAACCCCCGACCATCTCTGTCACGCAACCCACGACGATCTCTGTCAC
ACAACCCCCGGAACCAGAACAAATTCTTACCAAAGAACCAGCAGGAGTGG
AGATTGGCCAACCTTTTGTTGAAAACATCCTTGTGGAGAGAGAAAAGTCT
ACCACAACGACGACCCAGCAACCCGATGTCGAAACACAGTCATTTTGTGG
TTTAAACCCGTTTATTTATTTCGTTTTCATACAATTACAGTGCtcaaata
tttttcgttttaaaCGAGAGAACCTAAATGTTTTGAATTCCTAGCTTTAT
GTATAAAAACCTGTCTCCTTCTGTCATAAGATCTATGCTCTTTGATGCTT
TTGATCTTTAAAATCAAAGGAAGAACGGGACATAACCAACTGGGCAGTAA
GGagtgtcccgggggggggggtacttaacGAAGGCAAACTGTAAACTGTA
TGTGTGAGCCACAAGGGCCCCTTTATCACACCCTCGAAAATCCCTAAAAA
ATCGACTCAAAGCGTCATGAactcttgaaatttggactaaaatatGAACA
TTTCTGCTAAGATTTTGgggaaatagtctctctaagggtggcaaaaatgt
caaaaatagatgtcaaaaaatagacaaaaatgctcgaaattcagtctctc
taagagttGTACTTTTGATCCTTTGGGCATAGAATTTTCATATCTTTTGG
GTGCAGATGTACTTTGAAGTCTCCTGAGCTCAGCTCTATAGTTATTTTTC
CCATAATGTTCTGGTATCAAAGGTTATAGCCTCTAGAAGATTGCTCTCTT
ATTGGATTCAAAACACCCAGTATTTTGCTGGGttttttttCACTCCACCG
CGCTACCTTCTAAAATTTCTACTAAATAATTGTATGTGCCACAGACCTGG
TGAAAGATTTATCCCTCGGTGAGAGTGAACATTTATCAAAaccccaatgg
ggatagaaattatattgtccccattgctcaaaatttcagaattgaAGCAT
CgcttaaaaatgaaatagaaaGGTTGTAGTGCACACTTAAAACAATTGGA
CTTCTAATTTGGTGTAAAATTTCAACACGATAGacgcttttcataaatta
tgtcacaaacatcacttgcctcgtattcaagcaattaccatggtgattat
ctCACTTGAgacattaaaagattttttttatgaataggaagtacttttaa
taaaatccgctgggactTAATCACCacggcaataatttcaaaacgaggta
agtgatgttcgtaacgtaatttaagaaaaaggtctattggtgaAAGTTTT
GTTATTCCAATtatcctgtttttttttcagacgaCAAAGGTTGCTACCGC
CTTGCAAAAGGACTTCAAGGTGAGATAGAGGTCTGCTATGGTTTCAGTCG
AAAGCAACCTGCACGGTTTTTGTTTCCGAAAAAAGGACAAGTGGTTGGTT
ACAGGCTGGTCCACTCAAATGGTTTAATGACTTGCCAACCACAGGGAACA
ACTCAATCGACCAAATGGGGTTGTGAAGGACGCATAGGTATATAGTACAT
GTTTTTATCAAACTCTCTGATCTTTCCATCCTGTCTATCTTGTTCAAAAT
ACGGCTTTGTTCTTAGAAAGTCTTATAGGTACCTATCGGCATTTTTAAAG
CCCTTTCTTATtagctttatttttggaaattacCGGTCGTACTCGCCTTA
GGTTGGTTAAGTGTACAATTGTACCTTGTATTGGGTCATTCATCGCCTAT
TTGGACTTTTTTGTGGGGACAGTAAATTTTAATCTAAAAAGatataagaa
aacaaaaattcaaaacattttttgtagtactttaagtttcttgcgtacaa
tcatcagctacatacaaaatgatctaacttgttggaaaaaattttacAAG
TCGTAGGGTCGTAAAATGTcgtaaaattataataaaaatttgaaacaaaa
gaaacgtGATTCTCAAGGGTTCGTATGGTAagaaagcccccccccccccc
ctcaagaaAGATATAGAAAAATATGAATGCATATTTGAAGtcggcaaaat
ttcaaaatttcaaaagagtGTATGTCGGTCATCTTCATTTCATTCTTTGT
TCTCATGTTTTCATTTATGCAAACTTTAAAGCTTATATTTTAATCCACTC
agaattatctttccaatgagGTATTTTTCGTTTTATCAAATATTTATCCC
TTCAAGAGCAATGCATAAAAATTCATTACTTGCTAGCTTCTTATTTTTGT
TTGCTTATCTGCAGAAACCATAATAACAGACAATACCTATCGAAAACTAC
ACTCAAACTGGGAATGTCGATGGTTCGGTAGTGAAATTCACTTGGGAAAG
GTACTGGAATGGTTTCGCGCCTCGAAAAACGAAATCTGATGAGGGAAGAG
TTTGGTATGAGGTTCGTGTTATTCTTTGAAACCTTTATTTAtacgttttt
aatttcacagtcCTTTatattcattgccgtagagggtctgttatCATTGT
CTTctctgatttgagatttttaaaaCCGACCGCTGTGACGGAGTACGGCT
GAGAGAGGGGAaacgacgagagaagtgttgttatttatataaatcatact
tcatcgtaGAGGTTTTCCATATTCTGGTACAGAGCATCCCTCATACTCGC
CCGCTCACTCATTCGCTCATTCAATACATTCACTCATCCAAtacattcac
tcatccaatacattcactcatccaatacattcactcatccaatacattca
ttcatccaatacattcactcatccaatacattcactcatccaatacattc
actcatccaatacattcactcatccaatacattcattcatccaatacatt
cactcatccaatacattcactcatccaatacattcactcatccaatacat
tcattcatccaatacattcactcatccaatatatttattattttcagttg
gATTTGATGAACAACAATGTGACAGATTTGAACGGAAGTgatggaagaca
ttgcattgtcgTCTGGGTAATGTATAAACgttatcaattttga Coding sequence (CDS) from alignment at sc0000005_pilon:693713..697505+ >XLOC_038892 ID=XLOC_038892|Name=XLOC_038892|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2340bp|location=Sequence derived from alignment at sc0000005_pilon:693713..697505+ (Clytia hemisphaerica_ch_hm2_pilon)
AACCACTGTAGAACTTATAAAGAACATTGGTATCGGCTCATGCAAACGTT
CCATAGCTCCGTCAAACGGAAGTTTATAATCTGCCTAAGAAGCTGTTTAC
CTTTTGCCATgaacactttttttatcattcaaattttcattcacGCGTTA
CACTGTCATCAAATTGAAAATGATCGATCGACCGAATTCAACCTTGCCAT
AGATGATTTTGAGTTCCTTGGAACCCCAATATTGAGTTTCTCTGGCGAAA
ATTACGGGAATGTGTTGCGTTGTGTTCGTCAATGTGTTTCATTGTCGCCT
GTTTGTCGTGCGATCaatgtcaaaaaagaaatgCAGGTTTGCCGAATGTT
TGATCACGTGATTGATGATGATGTCcaaggaaatcaaaatcaaacgaAAT
GCACCAAAGGTTGGCAATATTTTGGTGTTCAAAATCAGAAGAAGGATGAT
GAGAAATCATCTATTGAGGTAATCATTACATACTTGTATCACCCGTACAC
GAACCACTGTAGAACTTATAAAGAACATTGGTATCGGCTCATGCAAACGT
TCCATAGCTCCGTCAAACGGAAGTTTATAATCTGCCTAAGAAGCTGTTTA
CCTTTTGCCATgaacactttttttatcattcaaattttcattcacGCGTT
ACACTGTCATCAAATTGAAAATGATCGATCGACCGAATTCAACCTTGCCA
TAGATGATTTTGAGTTCCTTGGAACCCCAATATTGAGTTTCTCTGGCGAA
AATTACGGGAATGTGTTGCGTTGTGTTCGTCAATGTGTTTCATTGTCGCC
TGTTTGTCGTGCGATCaatgtcaaaaaagaaatgCAGGTTTGCCGAATGT
TTGATCACGTGATTGATGATGATGTCcaaggaaatcaaaatcaaacgaAA
TGCACCAAAGGTTGGCAATATTTTGGTGTTCAAAATCAGAAGAAGGATGA
TGAGAAATCATCTATTGAGGTAATCATTACATACTTGTATCACCCGTACA
CGACCATCTCTGTCACGCAACCCCCGACCATCTCTGTCACGCAACCCACG
ACGATCTCTGTCACACAACCCCCGGAACCAGAACAAATTCTTACCAAAGA
ACCAGCAGGAGTGGAGATTGGCCAACCTTTTGTTGAAAACATCCTTGTGG
AGAGAGAAAAGTCTACCACAACGACGACCCAGCAACCCGATGTCGAAACA
CAGTCATTTTGTGACCATCTCTGTCACGCAACCCCCGACCATCTCTGTCA
CGCAACCCACGACGATCTCTGTCACACAACCCCCGGAACCAGAACAAATT
CTTACCAAAGAACCAGCAGGAGTGGAGATTGGCCAACCTTTTGTTGAAAA
CATCCTTGTGGAGAGAGAAAAGTCTACCACAACGACGACCCAGCAACCCG
ATGTCGAAACACAGTCATTTTGTGacgaCAAAGGTTGCTACCGCCTTGCA
AAAGGACTTCAAGGTGAGATAGAGGTCTGCTATGGTTTCAGTCGAAAGCA
ACCTGCACGGTTTTTGTTTCCGAAAAAAGGACAAGTGGTTGGTTACAGGC
TGGTCCACTCAAATGGTTTAATGACTTGCCAACCACAGGGAACAACTCAA
TCGACCAAATGGGGTTGTGAAGGACGCATAGacgaCAAAGGTTGCTACCG
CCTTGCAAAAGGACTTCAAGGTGAGATAGAGGTCTGCTATGGTTTCAGTC
GAAAGCAACCTGCACGGTTTTTGTTTCCGAAAAAAGGACAAGTGGTTGGT
TACAGGCTGGTCCACTCAAATGGTTTAATGACTTGCCAACCACAGGGAAC
AACTCAATCGACCAAATGGGGTTGTGAAGGACGCATAGATCTGCAGAAAC
CATAATAACAGACAATACCTATCGAAAACTACACTCAAACTGGGAATGTC
GATGGTTCGGTAGTGAAATTCACTTGGGAAAGGTACTGGAATGGTTTCGC
GCCTCGAAAAACGAAATCTGATGAGGGAAGAGTTTGGTATGAGATCTGCA
GAAACCATAATAACAGACAATACCTATCGAAAACTACACTCAAACTGGGA
ATGTCGATGGTTCGGTAGTGAAATTCACTTGGGAAAGGTACTGGAATGGT
TTCGCGCCTCGAAAAACGAAATCTGATGAGGGAAGAGTTTGGTATGAGtt
ggATTTGATGAACAACAATGTGACAGATTTGAACGGAAGTgatggaagac
attgcattgtcgTCTGGGTAATGTATAAACgttatcaattttgattggAT
TTGATGAACAACAATGTGACAGATTTGAACGGAAGTgatggaagacattg
cattgtcgTCTGGGTAATGTATAAACgttatcaattttga
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000005_pilon | genome | sc0000005_pilon:693713..697505 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1075-1170:3698 |
| Aaloc | 922-1074:3009 |
| Aaloc | 715-918:2083 |
| Aaloc | 502-711:739 |
| Aaloc | 1-501:1 |
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