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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000005_pilon:1245872..1250247+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_038876 ID=XLOC_038876|Name=XLOC_038876|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4376bp|location=Sequence derived from alignment at sc0000005_pilon:1245872..1250247+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCTGAATCAATACCAAACATGGCCCAAAAGGTAATTGAAGTAGTTAC
ATCCAACTTTAGCTGGGAAATCTGGCTCTGAAACCTTCTTTAATAAATGC
TCTTTATGAATTTGCTTAACGCTGGCTTCagcaaaatgtttcaaattcaa
ggacttcttttttttaacttttggactTTGTATATTAACAACAGAGTTCC
AAATGATAAATGACTGGTAACTCTCTCCTAACCACAAGTACTAAGCAGCA
TTTGTGATGGTACCTCcagcttttaaactttttctcttAGATAGAAACAC
GGGAAGATGAGGAGCAGGGAAAGAAGTTTCATGAAACAGTTGATTTGCTT
CTTGCTGCTGGATATTTTCGAGCAAGAATTAAAGGATTATCTCCCTTCGA
TAaggtttgtttattttctttaattcaaTCTACCTCGAGGTCCTTTAAAA
CGACCCTTGTCTGTTCATTTGTCGGTTTGTCCATCtgttactaacttttt
ttggggatTGGCTTACATTAGTTTCTTTTCTTAATTCTTTCACAAAGACT
ATGTCGGAAATGTGAGGGATCCGAGAgtttttctgataaaaaatgcTAAT
TACATACTCGTTATATATTCAATATAATTATATCATATTATACACTTCTT
TGGAAGGCAATTGGAATGTAAGCTTCACTTTCAATTTATAATACTTCGGA
TGGCACTAATCCCATTATAAATTTCTTGGATAGGTAGTTGGTGGTATGAC
ATGGTGTATTACCACGTGTGATTTCGATGTTGATGTCGACcttttatttc
aagaaaactcTACAATCGGTCAGAAAATGTATGATACtctcaatatttca
ttttataaaTCGTTGCTTACTCAGCTCCTTTATGTTAGATTCAAAAAAGC
ATGACTGTCAATAAAAACTGTACGGtcccatttttttcaattttgcattG
GATCGTTTAACGATTCTTAAAAATCCAtattcatttaaaaagaaactccC
TGTCCTACATTAAAACATGATTCTTATTTCTCTACCGCAATATCATccaa
agtctattcacgataagtgtgcactcttttttcttttacctataactttt
gaaggaattcttcaatcttcataaatttggtatcatttgaaagatattag
tgagtggaacaatttgaaataaaaaaatcttcaaaaaattctgaaaatga
agatgaaaatgaagaagtcatcactgtgaagaaatttcattaaaatattt
attcaatataaagttatgatacaaagttaataagtgattgaccccaaaaa
acagcaaaaaactgcaaaaacagcgtttttagacgtcaatcagcttataa
ctttgtttgatatcgtttgactgaatgattatttttgagaaattttttca
cagtgatgacgttcgatgatcaaggattcacttcagtgaaaatgatagtt
atactgtagcacttttctacaagatcttcatttttttcttcttcattttc
atcttcatgttcagaattcttttaaagatttttttatttcaaattgttcc
actcactaatatctttccaatgataccaaatttgtaaagattaaagaatt
ccttcgaaagttataggtaaaagaaaaaagagtgcacacttatcgtgaat
agactttagcaTCCCATTCAGTATTTGAAAGCATATAAATAGCCCAGAGT
TTGACCATTCAGTGATAGGCTCAAATTACTGTAGCCTTTAAACATGCCAT
AGTTACCATTGTTATTACTATTAGCACCAAAAAGACACATATTTGGCCAC
ATCGGTACTTCATAGTCCCTCATAGTAATAATCATCAAGTTAAATCAACT
GTTGTTTTACTCCTTCATTTGTTTTATTCATAGTGCATTGACTGAGAAGA
TTGTTGCAGTTTTACCAAAGATGAAATGTCCACATCGCATAGAACCTCAT
CAAATTCAAGGGCTCGATTTCATTCATATATTTCCTGTCATCCAGGTACC
ATATCACCAACACAATTATATTCATAACATTGttaataatatttgaaaaa
aagacagTTTGGTTAGAAATTACATCTCCCTCCGTAATACTATAGTAACT
TCGAGATAATCAGGGTCAAAAAGCTTACAATGTTAATGTTACAAATCATT
GATTACtagtttaattactgaaaatttcaaaaaagaatttcgaaTTTGAT
GAGGTCATcgttttttttgctaaaaaactgaaatcctTAAAAAATTCTGA
TGGatcataattttgaaaatttatataaCATGCacctttggtcaaaattt
gtaattgttgtttcatcaaaagtcattaaataaaatctttatgacgtcat
cgaaaaaactcgaattggtgtttttgcgaATCACGCCAGATTTCCTAAAC
AGAAACCATCTCCTTAGAAAAATCTTAATCTACTCATTAATTTACCTCTC
TCaagcccaaaatgagcttctaGAAcaatttgtaacgttgcaagtcTTTG
ACCCCTGTAGAataagaactttcaaaaattcttttacttAATTTTATGAT
GTTGACGTTTTATTTTCAGTGGCTTGTAAAGAGGGCAATCGAAGTTCGAG
AAGAATTGGGTGATAAGATTCGTGAATACTCAATTAATCAATTTCACAAA
TCATATTCCATGCCCAAAGATGAAGAAGCAAAGGAAAAAGAATTCCTATC
CCTTGATGCCGTCAAAACATTCAaggttttgattatttttgttaaaatcg
tttaaaggttttatttttgaataagagtgatatcgtttgcttacacatca
attttaatttacaagctttttcacattggattgacacggatgtggagcaa
gattggtcagaacaaggaaaagaaaaacgctTTTTTGCTAATATcagcaa
aatataataaaaggcagacactgtcctgatatgaaatatgtgtctgacaT
GAAACGGAGACACTTTGATatgtgaaaagaaaacttttaagatCGCATTA
ACTCCGAACTTCATTACTTCATTTATATGAAGTTGTTCTTTCAGTTAAGT
TCAGTAAAATGATTCTCTTCTCTTTATAGTCGCATCCTTCGGATAGTGGA
TTTTCTTAATCCTTTATTGTTCCGGTTGAAAATTGTATGCTATGCCTGTG
AAAAACATACTTGCGTAGAAAAAGCTACAATACTATTGACAATAATGTGT
CATTTCAGTGGTTttgttttattgcttttttattCCCTTATCGGACTAAA
ATTCGCATTCCTTCAAATTcaaccaaatttaatttttataatgcAACAGG
AATCATACAAGCCAAAACGAATGTTCAAGAAGCCCTCCAAGTTTGCCAAA
GCTGATGAAGACACACAAGTTCAAAGCACGCTCTTAGAATACGGTCAACG
CTTTGGTTTCAGTGGGAGTAAAGCAAACAAGGAAGAAACAGAAGCCAAAC
AAAAAGCCATTGCTGCAGGTTTGTGAGGGGAATTTTAGCTGGCGATCATA
TCAAAACTATTTTCATCCAAAGTAGGTCAAATAATTCCTAACGCTTGATT
TGTAATTGTGTCAAACTTTATATCTCAAATCACATCAGTAAGCGAATGAA
GGTGGGTTAGTATCACcaaagaaataatcaaattgatCTTGAATCACAGC
TCTAACATATTGAAGGATCGGtcttttctccattttttgCAGGCCTGGTA
AAAGTAAAAGGTGATGAGTCAGCAGAAaatcaagaagaagaagaaaagaa
attgaaactcCTCATGGAGGGCATGTCCGAAACTGACATTCAACAGGTTC
TTCTTATTGTAACGTTTTTTGGGACGAGATGGtgtttttacaagatttta
tttgatttggttggtcgttaaccagtaataaaacaattttgttacttttt
ctaaagaacgcgtcatttttgttacttcaaatgaccaaatattgaagtat
tttataaaaactccatctcatctgcgtTTTTTGGAAGCTCAGTCCccttc
aactttttcaatgagATGTTATTCAAAGTGCCGTATTTCGTTCTACAAAG
TCAAAGGGACTGTTTGGAAATATTCGTGAGTAAGAGACAAATCTAAGACT
TTATCTACATCCCTCTTTATTTTCAAGCTGAAACCAAGAAGACAGAAATT
CTAGTCTGGTCCAATTTTAGTCGTGGTTTTCATTCCTTAAAATACCAATT
AGGAAAATAACTTCTTCCTTTAGATGATCTCATCGCAAGCAGTCGGCTCC
ATCGTTGGTATGAAATCCGAAGAAATCTCACAGATCGCAAAAGATTACTT
GCAGAGACAAGCAGAGCTTGAACAGGAAGCGAGCGATATGAAAGCGGGCA
AATCTGGTGGTCTTCAAACGCACAAG Coding sequence (CDS) from alignment at sc0000005_pilon:1245872..1250247+ >XLOC_038876 ID=XLOC_038876|Name=XLOC_038876|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1872bp|location=Sequence derived from alignment at sc0000005_pilon:1245872..1250247+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCTGAATCAATACCAAACATGGCCCAAAAGATGGCTGAATCAATACC
AAACATGGCCCAAAAGATAGAAACACGGGAAGATGAGGAGCAGGGAAAGA
AGTTTCATGAAACAGTTGATTTGCTTCTTGCTGCTGGATATTTTCGAGCA
AGAATTAAAGGATTATCTCCCTTCGATAagATAGAAACACGGGAAGATGA
GGAGCAGGGAAAGAAGTTTCATGAAACAGTTGATTTGCTTCTTGCTGCTG
GATATTTTCGAGCAAGAATTAAAGGATTATCTCCCTTCGATAagGTAGTT
GGTGGTATGACATGGTGTATTACCACGTGTGATTTCGATGTTGATGTCGA
CcttttatttcaagaaaactcTACAATCGGTCAGAAAATGTAGTTGGTGG
TATGACATGGTGTATTACCACGTGTGATTTCGATGTTGATGTCGACcttt
tatttcaagaaaactcTACAATCGGTCAGAAAATTGCATTGACTGAGAAG
ATTGTTGCAGTTTTACCAAAGATGAAATGTCCACATCGCATAGAACCTCA
TCAAATTCAAGGGCTCGATTTCATTCATATATTTCCTGTCATCCAGTGCA
TTGACTGAGAAGATTGTTGCAGTTTTACCAAAGATGAAATGTCCACATCG
CATAGAACCTCATCAAATTCAAGGGCTCGATTTCATTCATATATTTCCTG
TCATCCAGTGGCTTGTAAAGAGGGCAATCGAAGTTCGAGAAGAATTGGGT
GATAAGATTCGTGAATACTCAATTAATCAATTTCACAAATCATATTCCAT
GCCCAAAGATGAAGAAGCAAAGGAAAAAGAATTCCTATCCCTTGATGCCG
TCAAAACATTCAagTGGCTTGTAAAGAGGGCAATCGAAGTTCGAGAAGAA
TTGGGTGATAAGATTCGTGAATACTCAATTAATCAATTTCACAAATCATA
TTCCATGCCCAAAGATGAAGAAGCAAAGGAAAAAGAATTCCTATCCCTTG
ATGCCGTCAAAACATTCAagGAATCATACAAGCCAAAACGAATGTTCAAG
AAGCCCTCCAAGTTTGCCAAAGCTGATGAAGACACACAAGTTCAAAGCAC
GCTCTTAGAATACGGTCAACGCTTTGGTTTCAGTGGGAGTAAAGCAAACA
AGGAAGAAACAGAAGCCAAACAAAAAGCCATTGCTGCAGGAATCATACAA
GCCAAAACGAATGTTCAAGAAGCCCTCCAAGTTTGCCAAAGCTGATGAAG
ACACACAAGTTCAAAGCACGCTCTTAGAATACGGTCAACGCTTTGGTTTC
AGTGGGAGTAAAGCAAACAAGGAAGAAACAGAAGCCAAACAAAAAGCCAT
TGCTGCAGGCCTGGTAAAAGTAAAAGGTGATGAGTCAGCAGAAaatcaag
aagaagaagaaaagaaattgaaactcCTCATGGAGGGCATGTCCGAAACT
GACATTCAACAGGCCTGGTAAAAGTAAAAGGTGATGAGTCAGCAGAAaat
caagaagaagaagaaaagaaattgaaactcCTCATGGAGGGCATGTCCGA
AACTGACATTCAACAGATGATCTCATCGCAAGCAGTCGGCTCCATCGTTG
GTATGAAATCCGAAGAAATCTCACAGATCGCAAAAGATTACTTGCAGAGA
CAAGCAGAGCTTGAACAGGAAGCGAGCGATATGAAAGCGGGCAAATCTGG
TGGTCTTCAAACGCACAAGATGATCTCATCGCAAGCAGTCGGCTCCATCG
TTGGTATGAAATCCGAAGAAATCTCACAGATCGCAAAAGATTACTTGCAG
AGACAAGCAGAGCTTGAACAGGAAGCGAGCGATATGAAAGCGGGCAAATC
TGGTGGTCTTCAAACGCACAAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000005_pilon | genome | sc0000005_pilon:1245872..1250247 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 784-936:4224 |
| Aaloc | 682-783:3695 |
| Aaloc | 511-678:3300 |
| Aaloc | 355-510:2570 |
| Aaloc | 244-354:1885 |
| Aaloc | 148-240:734 |
| Aaloc | 34-147:291 |
| Aaloc | 1-33:1 |
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