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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000117_pilon:363300..370398- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_038871 ID=XLOC_038871|Name=XLOC_038871|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7099bp|location=Sequence derived from alignment at sc0000117_pilon:363300..370398- (Clytia hemisphaerica_ch_hm2_pilon)
CATAGAAACAAACCATTAAAAAGCATATTTAATTCAAAAATGAGTTTTGA
TAAATACAAAGAAAAAGTGGAAGAAGGGGATACTGTTGTTCTATACTTGG
TAAGTTACTTTTTCCAAAAATTAAGATTCTTTGTGTAGATTGATGTTTTT
ATTCTTACCATTCAAATGAACCTTGCTCACTCTGACTTATTTCACAAAAT
GCCAGGTAGCATTTTGCACCCGGGTGCAAACCAAATCTTGGGTTTGGTTT
GCGAGATGACAGGTTTGTCCGAAAAGTTTGATATAGACCCTTTAGAGAGA
CTGGATTTCGAAAATGTTGTCCACTTTTTGACGTTTTTATCAATCTTAGA
GAGACTATTTCCCCAAAATGTCTGCCAAAATTCTCAAATTTTAGTCCAAA
TTTCAAAAAAGATCATGACCCTAGGTATACTATTTTTGATTTCGTAATTT
TTGAACCCTTACAGAGACTCAATTATGCTTTTAAATGGTTTTTGTACCCC
TTTGAGGGACTTTTAATGGTGTGAAAAAGGTGACCCTTATGACTAGCACA
TATCCGGCACGGCACCCATTTTACCTTAGTATCACCCCCGGGTAGGGGTG
CACCACAAAAAAGGCAAGGCAATGTATTCAGTTTTCTCAAGGTTTTTAAG
GAGACTGAATATTTTTGCAATAGAACTAAGAATATAAATAAAAAGAAACT
TTTGATGCTGCTCCTGATACATTAATTTTTAATCATGTTTAGACTTTTCT
GTCCACCCCTGTCTTAGTGCTCCAGAGGAAACGCTTTCCCTCAATGGGGA
TGAAAATTTTTTATCGAAATCACCATGGAATATATATTGTTTCCATATCA
AAAACGCCATGGGAATGGTTTTGGAATGCAATTTTCGCCACTTAATTACT
AATAGGTTGTGATTTTTTAGCCAATTTTTCCAGTGGGGTCTTCACCTTCA
TTCAAGTCTTCCATTGGAATAAAATGTATACAGTAATGTCTTAACATTCA
TACTCATTCTTAGTCATAGAAGAAGATTTCGAAAAACAGGAGAAATTAAG
GAGGGATATTTCTATTCAATATAGGGCAGAAATTCAGCCTTGTCATTTCA
AATAGATGTAACGAAAACTCATCAAACCAAATATGGGGCCTTCCCACACA
AAGATCTAATCGGTAAGGCCTTTGGAACCAAGGTAGGAAGATATTGGTTT
TTCTGTTATAAATATTGATTTGAAAAATTGCATAGAAATTCTATTTATAA
ATCAATGTGAGCCTGGATAAAAATAAAATCTTCATTAGCTTTGGTCGTTG
AAGCTTTTTATGAATTTCTTTGTACATCATAGCATAAAGAATGAACTTTT
TTTAATTGAACAGTTAAAACAATGACTTGGAAATGAAATGTTCTATTTAC
CTAATCTTAATCACATCATCACAGGCATATTCCATGAAAGGAAAAGGGTT
TGCTTACTTACTGCATCCCACACCTGAGTTATGGACAGTGACGCTACCAC
ACAGAACTCAAATCTTGTATAGCACGGATATCTCCCAAATCACAATGGAA
TTGGATTTGAAACCAGGCTCTATCGTAGTTGAATCAGGCAAGTAAATACT
TATTTTAATTTAGAATATTGTATGAATGTTTGTCTGAAAACTGCATTGGA
TGAAGTTTCTCGAGGAATATAAATTTAAACCTAGGACTGGATTGTAAAAA
AAAACTGCAATTAGGCTGGACTTAAAAAATTGTTGGTTTGTCGTCACCCG
ACCGACCCTACCTCGAAACTTGCCGACCCAAAAAATTTTATTGCCATTTT
AAAGAAGATTTTTTTTCCTTCAAAAACTTCAAGCAATAAAAAATCAAAAC
TCGTATCTTGTTTGTCTCAAGCATAAGAATCGTAAATTCCCTGCTAGCAC
TTCTGTTTTTTATTCAAAATTACCTAAATGTAAACAAACTGTCAACCCTT
CCATGGACGAAAATTTCATAAATCGCCAAAATAAAAAAAAATTCCGACCG
ACCGACCCACCTCCAAAATCTAGGGTCGGGTGACGGCAAACCATCAATTT
TTTAAGCCCAGCCTTAGGGTCTTTGAGCAATGGAAAAAGTGCTGAAGGTG
AGTCTAGTACGGTTGCTAGAAAATTTTAGCAATTATTTCATTCCCTTAGG
AATTAGATTCTGGTAAATCAATCATAGCGTTTTAACTTGTTCATTCTCAA
TATATTTTAGGTACTGGAAGCGGATCGCTGTCACATTCTATTGTTAGAAC
GATAAAACCTAATGGTCATTTGCACACTTTCGATTTCCATGAAAAGAGGG
TAGAAAGTGCAAGGTAAAAATTGCGTTTTTATTCTGCTAGCATATATCAC
TAATTTGATTTATGAGTGTCAGAGATTATGGAACCAAACTGCATAGCTCA
ACCTTTCAGAAAACCTTTAAAGTGGTGGTATGATTTTCTCCAAATCAATA
ATGGCAGCGTCAACATTTTATTCATGTTTTATATACGGAAATTCTTCAAA
TTAAACAGCTCGTTAAAAAAATTAAGAAGGGGATATTGTATTATGGGGTA
TTGAATATAAACGGGGGTCTGGGTATAAATCAAATGTAGTCTTATTGGTA
GACCTAGTCGACTTTTGTTTTCTTTTTTAGGGAAGAATTTGAGCATCATG
GTATTTCCCAATATATTACCTCTAAATGCGCTGATGCATGTGTTGATGGG
TTTGGACTGGAAGACTGCGCTGATGCAGGTAAGAATTTCAATTCTCGACT
GTCTGTCTGTCTGCCTGCCTGTCTGTCTGTTTGTCACAAAAACTTTGCGG
CAGCCCGGCCGGTGTGACTTCAAAAATTGTTGGATTTGACTGAAGTTTGG
CACACTTGTTTCTTGGGTAAATATCTAGGGTTGCTTTTTTCATTGTTTAA
AAATTTTGATTTTGGGGGCTGAGGACGAGCTTTTCACCAAAACGAGGCTA
AAACTTTGAGGCAGCCTGGAGACTTCCAACAATATGGTCAGATTTGGCTG
AAATGGTTTGTTTGTTTTGCTACAATCAGGCCGCGTTGCGCATGTTCAAC
TATTTGATTAACTACCATAAGTTTAAACATCACTGTCAGCTACTTGTAGA
GATGTATAGTTTAATTTTTGCGATACTTTTTGGACCTACCTTCGGGTACC
CCGGTGGAGGTTCTATAAATTAACCCATGTCCGTTCGTTCGTTCGTCCGT
TCGTCCGTCTGTCTGTTACCAGCTTTTCTCAGGATTGGCTCATTATTTTT
TTCTGATTTTTTGCACAATGATGCAAAATGGCAATGCCCAGAACGTGACG
GAGCCCGATTTTTGAGAAAAAATTTATTTGGGCAAATTTGGGCCAAAAAC
TACCTAAAAATAGGGTTTTTTGGACTTTGTGCAAAATCCTGTCATTACTT
TTTTCTGATTTTTTGTACAAAGAGGGAGGGCAAGATTCTCTAAATAATGG
ATAAAGTGGTTTTTCCCGGAAAATTCTTATTCGCCTTAAAAAATGGATTT
TCGTATTTTGAGGGAAATTCCCTTTAACCAAATAAGAAAATATAGCTTTT
CTCAATGTTGACTCATTATTTTTTTCTGATTTTTTGCACAATGATGCAAA
ATGGCAATGCCTATAAAATGTGTCGGAGCTCGATTTTCGAAAAAGATATA
TTTGGGCAAATTTGGGCCAAAAACTGCCTACAAATAGGGTTTTTTGGACT
TTGTGCAAAATCCTGTCATTACTTTTTTTCTGATTTTTTGTACAAAGATG
GAGGGCAAGATTCTCTAAAGAATGGCTGAAGTGGTTTTTCCTGGAAAATT
CTTATTCACCTTAAAAGACGGATTTTCGTATTTTGGGGAAATTCCCTTTA
ACCAAATAAGAAAATATAGCTTTTCTCAATGTTGACTCATAATTTTTTTC
TGATTTTTTGCACAATGATGCAAAATGGCAATGCCCAAAATGTGACAGAG
CCAGATTTTTAAGGAAAATTTTTTTCGGCAAATTTGGGCCAAAAACAGCT
TAAAAGGTTTTTTGCGCTTGAATAGTTTAAGTGATTTTCGTATTTGGGGA
AATTCCTTTTTACCATTTTACATTATTCAACACACAAGCTTTATTTTTCC
ATTCTGAATTTTTGTACAATTATTGTCACTTTTTTCTTATTTTCATCTGA
TGTTAATCATTAGGTAGGTCCATTCAGCATGTTGCTTGTTAAATATTGTT
CGTCAAATTTATCTTTTGGAAATGTTATTTATTTTAGTATTTCTGGATCT
ACCAAAGCCCTGGGATGCCATACCACACGCGAAAAAAGCATTAAAGGTAT
TCCTCAAACATAATATTGACAAGTTTATTGTTAATTTATTAAAAATCTTT
TGAGGAGATTCAATATCCACATCCTCAAAGGATGTCTTTGCCAAGATGAT
GGGATTCATTATCCATTCAATAAAGAAAATATTTCTTGGGGGGGGATGCC
TACGACACTATAAAATTGCCCTTTGATTGATAACCTATTTTTCGCATAGT
GTCCTCCAGGGTTTGTTCCCCCCACCAAATTTTTGATTTTTTTAAATCTC
CCCCCTCTTTTTTTTCCCCCTATGACTTTTCAGTTTTTTAGTTTCCCCCC
TCTTTTTTGCTTTCCCCCAAGAAAATTCTGAAAATATCATTCCCACCCCC
CCCATATACCCGTATAAATTTCTCAAATTTCAACCTGACACAGACGTAAA
ATTTTGCTGCAAAAGGAATACTAGACAAAATTGAACGAAAATTGGTTAAT
TTTCAATCATGATCTAATCACATGATATCATGTGGACTGACCTTGGTTGC
TGAGATAAAATTGAAGTGATTTCACACTTCCCCCCACCAAATTTGCCAAC
TATCGATGTTTTCCCCCCTCTTTTTTTCCCCCCCTTTACTATTCAAATTT
TCATTTCCCCCCTCACCCATTCAAAACTGGAAAATTGATTCCCCCCCCCC
TTTATAAAGGGGGGGGGAGGACACTATGATTTTGGCTCTCACGCAAACAT
TTCATTAATACTTTCAGAGGTCAGGGTCATTATCAAAGTTTATTTCTTCA
TTTTAATATTTTCTTTTTAATTATTAGAAATCTGGTGGCCGTATCTGTTC
ATTTTCACCGTGTATCGAGCAAGTTCAACGCTCATGTGTTGTACTTAGAA
GATTGGGCTTTTGTGGTAAATAAATTTCTTTTTTATGTTTATTTTGTCAT
ACCCAGGCCGGAGGCCGGGATTCCAAATGGTCTTAAAAAACCTGGAAAAT
CCTCTTTTAAAAGGTTTCTTCAGGATCTTTTTCATTGTTTTCTTCGTCCA
AAATAAACACAATCACATAATCAGCACACCTTAAAATTGTATTAAAAATT
AATAGCATCACAAGATGAAGTCATATCAGTTCTAATTCGAGAAAAAAGAC
CAATTTTCAAAGAAAGATTCCTGGAACATTACACCTTTTACAGCTCTTTT
TAATGAAGAAAGGGTCTAAAAGATTTAATCAAAAGTCAAGGGAAATTATA
CTCTAGCGAATCCTATATATATATCGACTGTCCTTGATAACTCCAGATGA
ATTCCTATCATCGTCATTACATTTTATATGCCTTATTAGTTATCAAAACC
AAGTTCAATTTAGCTTTTATTCTTCTGTAGAAGTGAAAACAGTCGAGTGT
TTGGTTCGAGCAATGAACGTTCGTACGACTCCAATGCCAGAAGCCAACAC
TGGAGCTGGTTTCAAATGGGTAAGAGTTTGAAAATGTATCCACTTTAGTC
CGCCCACATATTGTTATGTTATTTTTCAGTTGATAATCACCGAGTTTAGT
AGTAAATTCATTCTGATGAAGTCCAGAAGAGGATATCGCATGACCTTGGA
GGTTGTGGGGTAGGGTGATCATATTTTTGGTACATATCCCTGAAAATTGA
GTATACCTCTAAATTAAAAACGTTAATTTCTTTATAATTATATCTATCTA
TTATCAATGGGCCATTCCATTTTATGTCCATACATGGGGGGTGGACGAAC
ATTTCCAGGGGGTGACTTGAGCAGAATTTCCAGGGGGTCTAAAATTATTT
CAAAATTTCCAAGGGGTAAAAAAAAAGACTGATTTTAGTTCGTCCACCGT
CACTTTAAGGTATGAAAATAAATTTTCCAAGGGATTTTTTGAAAATTTTC
TAATTTCCAGGGAATATTTCCAAGAAATATTTTTTGATTTGAAAAGGCTC
ATCCACTCCCCCCCCCTGTATGGAAATTTAATGGAATGGCCCAATTTTTT
ATCAAAAAATAAAGAAATAACTCACAATTACTTCACTTTATTTTATTGCT
TATACTCTTTTCATGCATGAAACATCGTGTTGCAATCGTAAGCTGCTTCT
TTATTTCACCATATTTCGCTGGGCATTTTCTCTAATCTTTGAGCACTTAA
TGATTCTTTATATTTCATTGTATATCACATTTTTCTCTATATAGGAAAAA
GTGGAGAAGACGACCAGCATAACTAGCGAAGATGAACCACTATCTAAAAT
GAGAAAAGTAAGTTGAATTGATATCTCTACTCAAATTTATTTTGATGGAT
AAAAAAGTTTAGTGATAACTTCTTTGTAAAACGAGAAAGGACAAGGTTTG
TTGGGTATAATGCCCATTCTTTACACAAACAAAGTTCTGTGGTGTCGGTC
AACACGATAAGAATCCCTCCTGTTAAATTATGATTGAACTTGTTTAGGTC
TCAGATGCAGAAAGTGGGTCAGACAGAATCACCACAAGCGACACAGCAAA
AGAGAATTCGAAAAGTGAAAACGATCAACAAATGGATGAGACGAATCATA
AAAATGAAACCGAAAGTAAATCAAATGAAAACGTGAACGCTAATACGAAT
TCTAACCAAGAATCGTCTGAAAATTCTAAGAATTCTCCGGTAAATCAACA
ATCCTCAAAAGTACAAAGCGAAAATGTTGCAGGACTTTTACCAAATGGTA
TGGTAGCTAAGCTAACTGCAGGAACAAAGCCTGGTAATATCAATGTTCTG
ACGAGTAAACCTGGAAAACAAATGCCTGGTCATACAGGTTATCTGACTTT
TGCATCTTGGTATCCTTCATGTAGTAGTGAAGTTAAGAGAGAAGAATAG Coding sequence (CDS) from alignment at sc0000117_pilon:363300..370398- >XLOC_038871 ID=XLOC_038871|Name=XLOC_038871|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2544bp|location=Sequence derived from alignment at sc0000117_pilon:363300..370398- (Clytia hemisphaerica_ch_hm2_pilon)
CATAGAAACAAACCATTAAAAAGCATATTTAATTCAAAAATGAGTTTTGA
TAAATACAAAGAAAAAGTGGAAGAAGGGGATACTGTTGTTCTATACTTGC
ATAGAAACAAACCATTAAAAAGCATATTTAATTCAAAAATGAGTTTTGAT
AAATACAAAGAAAAAGTGGAAGAAGGGGATACTGTTGTTCTATACTTGGG
CAGAAATTCAGCCTTGTCATTTCAAATAGATGTAACGAAAACTCATCAAA
CCAAATATGGGGCCTTCCCACACAAAGATCTAATCGGTAAGGCCTTTGGA
ACCAAGGGCAGAAATTCAGCCTTGTCATTTCAAATAGATGTAACGAAAAC
TCATCAAACCAAATATGGGGCCTTCCCACACAAAGATCTAATCGGTAAGG
CCTTTGGAACCAAGGCATATTCCATGAAAGGAAAAGGGTTTGCTTACTTA
CTGCATCCCACACCTGAGTTATGGACAGTGACGCTACCACACAGAACTCA
AATCTTGTATAGCACGGATATCTCCCAAATCACAATGGAATTGGATTTGA
AACCAGGCTCTATCGTAGTTGAATCAGGCATATTCCATGAAAGGAAAAGG
GTTTGCTTACTTACTGCATCCCACACCTGAGTTATGGACAGTGACGCTAC
CACACAGAACTCAAATCTTGTATAGCACGGATATCTCCCAAATCACAATG
GAATTGGATTTGAAACCAGGCTCTATCGTAGTTGAATCAGGTACTGGAAG
CGGATCGCTGTCACATTCTATTGTTAGAACGATAAAACCTAATGGTCATT
TGCACACTTTCGATTTCCATGAAAAGAGGGTAGAAAGTGCAAGGTACTGG
AAGCGGATCGCTGTCACATTCTATTGTTAGAACGATAAAACCTAATGGTC
ATTTGCACACTTTCGATTTCCATGAAAAGAGGGTAGAAAGTGCAAGGGAA
GAATTTGAGCATCATGGTATTTCCCAATATATTACCTCTAAATGCGCTGA
TGCATGTGTTGATGGGTTTGGACTGGAAGACTGCGCTGATGCAGGGAAGA
ATTTGAGCATCATGGTATTTCCCAATATATTACCTCTAAATGCGCTGATG
CATGTGTTGATGGGTTTGGACTGGAAGACTGCGCTGATGCAGTATTTCTG
GATCTACCAAAGCCCTGGGATGCCATACCACACGCGAAAAAAGCATTAAA
GTATTTCTGGATCTACCAAAGCCCTGGGATGCCATACCACACGCGAAAAA
AGCATTAAAGAAATCTGGTGGCCGTATCTGTTCATTTTCACCGTGTATCG
AGCAAGTTCAACGCTCATGTGTTGTACTTAGAAGATTGGGCTTTTGTGAA
ATCTGGTGGCCGTATCTGTTCATTTTCACCGTGTATCGAGCAAGTTCAAC
GCTCATGTGTTGTACTTAGAAGATTGGGCTTTTGTGAAGTGAAAACAGTC
GAGTGTTTGGTTCGAGCAATGAACGTTCGTACGACTCCAATGCCAGAAGC
CAACACTGGAGCTGGTTTCAAATGGAAGTGAAAACAGTCGAGTGTTTGGT
TCGAGCAATGAACGTTCGTACGACTCCAATGCCAGAAGCCAACACTGGAG
CTGGTTTCAAATGGGAAAAAGTGGAGAAGACGACCAGCATAACTAGCGAA
GATGAACCACTATCTAAAATGAGAAAAGAAAAAGTGGAGAAGACGACCAG
CATAACTAGCGAAGATGAACCACTATCTAAAATGAGAAAAGTCTCAGATG
CAGAAAGTGGGTCAGACAGAATCACCACAAGCGACACAGCAAAAGAGAAT
TCGAAAAGTGAAAACGATCAACAAATGGATGAGACGAATCATAAAAATGA
AACCGAAAGTAAATCAAATGAAAACGTGAACGCTAATACGAATTCTAACC
AAGAATCGTCTGAAAATTCTAAGAATTCTCCGGTAAATCAACAATCCTCA
AAAGTACAAAGCGAAAATGTTGCAGGACTTTTACCAAATGGTATGGTAGC
TAAGCTAACTGCAGGAACAAAGCCTGGTAATATCAATGTTCTGACGAGTA
AACCTGGAAAACAAATGCCTGGTCATACAGGTTATCTGACTTTTGCATCT
TGGTATCCTTCATGTAGTAGTGAAGTTAAGAGAGAAGAATAGGTCTCAGA
TGCAGAAAGTGGGTCAGACAGAATCACCACAAGCGACACAGCAAAAGAGA
ATTCGAAAAGTGAAAACGATCAACAAATGGATGAGACGAATCATAAAAAT
GAAACCGAAAGTAAATCAAATGAAAACGTGAACGCTAATACGAATTCTAA
CCAAGAATCGTCTGAAAATTCTAAGAATTCTCCGGTAAATCAACAATCCT
CAAAAGTACAAAGCGAAAATGTTGCAGGACTTTTACCAAATGGTATGGTA
GCTAAGCTAACTGCAGGAACAAAGCCTGGTAATATCAATGTTCTGACGAG
TAAACCTGGAAAACAAATGCCTGGTCATACAGGTTATCTGACTTTTGCAT
CTTGGTATCCTTCATGTAGTAGTGAAGTTAAGAGAGAAGAATAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000117_pilon | genome | sc0000117_pilon:363300..370398 - |
Properties
| Property Name | Value |
|---|
| Aaloc | 871-1272:403 |
| Aaloc | 808-870:656 |
| Aaloc | 721-807:1468 |
| Aaloc | 631-717:2023 |
| Aaloc | 574-630:2861 |
| Aaloc | 475-570:4469 |
| Aaloc | 373-471:4888 |
| Aaloc | 208-369:5676 |
| Aaloc | 100-207:6026 |
| Aaloc | 1-99:7100 |
|
