XLOC_038822 (mRNA) -

Overview


Name	XLOC_038822
Unique Name	XLOC_038822
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000005_pilon:1193937..1197654-
coding sequence from alignment at sc0000005_pilon:1193937..1197654-

mRNA from alignment at sc0000005_pilon:1193937..1197654-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_038822 ID=XLOC_038822|Name=XLOC_038822|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3718bp|location=Sequence derived from alignment at sc0000005_pilon:1193937..1197654- (Clytia hemisphaerica_ch_hm2_pilon)
ATGTATAGACTGATAAAGCGATACCTTGTTACAGTGATTGTGATTTTTTG
TTTGTGCTGGTTATGTATTGATTTAATGTGGGTGCAGTGGAAAAAAGAAA
GCACTTCCCATGATAAACCAAATCAAAAATTTAAAAATGATTATAATGAT
GAGGACTACATACGGCATATAAAGAGGAGACGGAAATTTCCCACTACAAC
TGAAGATAATTATAAGGATGAAAATAATATCAATAATGAAGACAATCATG
CTAACAAAATAAAATTCCTGAATGACGGTAATTCTAAAGAAAAGAAATTT
GAACATGTAAAGGAACATCCTAACCTAGAAGTTCCTGGAGATATAGAGAC
AGATATTAAACCTGAGGAACCTAAAATTAAAGTTGAAGACAACATGGTAT
CAATAGATTATTTCAAGCAATTTTATAAATATTCATTGGATCCACAACCT
GGTAGTGCTGGTATGAATGGTGCAGCTGTTAAAAATTCTATGGATGAAAA
AGCTGCAGAAGATTTAGGATTTAAAAGATATAGTTTCAATGAACTTTCAA
GCTCCAAAATTTCTTTAGAGAGATCTGTACCTGATAATAGGGAAGATGCG
TGAGTATTTTTTTTCTTTCAGCTGACTCTTTTGCTATCCTACATATTTGG
CAATCTTTTTCAGATTTTTTTCTTTTGAGACTGTTTGAGAAGATTTTTAT
ATTTTAATCATCTCAAAAAGATCATTGAAGACAACTGACAAGTGCTTTTT
TCCAATTTATCTTGTAAATTCTCCTTTTTTTTCAGCTGTTTCAATGTGAA
ATATCCAACAGATTTACCAGATGCAAGTGTTATCATTATCTTTCACAATG
AGGCTTGGTCTACACTTATGAGAACTGTCCATACTGTTATTGCAAGATCT
CCACCACAATACCTACGTGAAGTTATCTTAGTTGACGATTGCAGTGTGAC
AGATGATTACAGTTAGTATAAAATCCTATGTACTGGATACTTTTTTAAGC
AACTGTTTTTTAGTATGTGACTGTGATTGCGATTCTTTACTTTGCTCTTA
ATACCCATTCATTTGAAAAAAAATTTCTTTCAGCTCACTTGGGAAAAAGA
TTGCAAGAATATGTTGATTCTCTTCCAAAAGTGAAATTATTTCGTTCACC
AAAACGTGTTGGGTTAACACAAGCAAGATTAATTGGTGCTGATAATGCAG
TTGGTGATGTTTTGATTTTCCTTGACTCACATTGTGAATGCACAGACGGA
TGGATTGAGCCTCTACTTGCCAGATTAAAAGAAAATCCCAAGATGTCAGC
TGTTCCTGATATTGAAGTTATCAAATGGAAAACCTTTGAATATGTCCAAT
CAAAGGGCTCAAGAAATCGTGGCGTCTTCAGTTGGGATTTGATATTCCAT
TGGAGTGGTTTACCAATGCATGAAATTAAGAGAAGAAGAACACAAGCTGA
TCCAATCAAGTATGTTTCAATTCAAACTTGTTATTCTAAACTTATTTAGT
ACCTTCCAACATTCATCTTTTGGTATTTTTTCATGTTGCAAGCAATGATA
AAGCAAGCAAAAATGTGATGTCTAATCTAAATGTTTTTAGATTTTATGCA
TTATATCTTTTTATTATTTCCTTATAGACTACTATACTTTTTTATAATTT
CTTTTAGATCCCCAACAATGGCAGGAGGATTATTCGCCATTGATCGGAAG
TTCTTCTTTGAGAGTGGAGCTTATGACAGGGGTTTGACTTTTTGGGGTGG
TGAAAACATAGAAATGTCGTTTAGAGTAAGCAATTATTTCTTTTTCTCTT
TCTTATAACTCAAGTTATGTATGAGGCTCTCCAAGCAGAGTCCCTGATCA
TGCTAATCACGCCATCGCATGGAAAATATTTACTCCATCACTTCAAAAAA
TTATTTTATCAATCACGCATCACATTTTTTGAAATCATAGATTACGCCAA
AAAAGGCAGAATCGTACCATCATACAAACTACTAGGAATGGGGCTCCTAT
ATGTCCTAATCAAATTTTATTTGTTATTCAAAAATATCTATGATATGATG
ATATGATTAGAATCATTTGTTATGTATGAGCTGGTATATATGTAAAATTA
TATAATTTATCAGCATAATATATAAGAATTTTCAAAATTTTCTTTTAGCT
TTGGATGTGTGGTGATGGTATTGAGATTCTACCTTGTTCTCGGGTTGGGC
ATGTATTCCGCGAAACAGTTCCCTACAAAGTTCAAGGTGGCTCTCTCACT
CATAACACCATCCGGGTAGCAGAAGTTTGGCTTGATGAATTCAAAGAAAT
TTACTATATGCTTCATGCTGGAGCTGCGAAACCAGAGATGGGTGGAGATG
TGTCTGAACGTATAGCACTTCGTGAAAAGATGCAATGTAAAAGCTTCAAA
TGGTTCTTGCAAAATGTTTATCCGGAAATACATATTCCAGATAGATATCC
TTATGGACGGGGAGATGTAAGTGTGTAGAAAGGAAACCAAAACTAGCATA
AAAACATATAATCTGATTTTTTACATTCTATTTGCCTTTGTTCTGAGGTT
TTTAGGTTCTAGAAGTTTATAGAGAGATTTCTGTTTGATATAATCTTTGC
TTATGTTTGTCCTTATTTACTCCAAATGAATTGGGATGGAATTTGAAACA
TATACTGATTTACCCTTCTTGTATTTCTCTGCACATTAAGAGTACCTCAT
ACTTGAGTAGAGCTTGTTATGTAAAGATTAGAAAATACTAGATACTAATA
AAGATACTAATTTTCTGTCCTTAATTCAGGTTTTGAATATGGGTACCAAC
AAATGCTTAGACTCCCTCAAACATGACAACAAAGGAGGAGAGCCAGGTTT
ATTCCCTTGCCATCATCAAGGCTCAAATCAAGTAAGGCTTCTACAAAGTT
TCCTGTAAAATCTCTCTTACTGTAAAGTTTCCCGCTTCAAGCAGCTTCAA
GGTTTATTGGTTATGATTTAAAGAATTGTTCTATACTGTTATCTCATTGT
TATCGTTTTAACTAAGTTTAAGGTTGAAAGGCTTCTTTTTTCTGTTATCA
TCAGCAAAGATAGAACCTTTCATAAATGTTATGATTCTAAGATCTAATGA
TTCTAAGTGAGGCTCACATATTTTCTTTACCTCTTTTTTTTACAGTTCTT
CATACACACGCTTAAATATGAAATCACGCAAGGAGATCTGTGTTTCGATT
TGGCGGCAGGAACTGATAGTTCGAAAGTGAAACTGGTCACGTGTCATCAC
CTTGGTGGAAATCAAGCATTTGAACATCTCAAGGTTTGTTAACAAACAAT
TCCAGTTCTACTCTAACTGATGGTCTACAGTATATAATTTTAGAAAGAAA
TTCGCTATAGTCAAATAGAACCAGATACAACAATCAACTAACATAACGTG
CTCTATTTTGTTTTGATAATTAATTTATACAGTACAATGCTTTTGCAAGC
TCATTATTTCTTTCATAGCTATTCAGACCCCAATTTGAATATCGTTAACC
TGTCTTTATTGTTTGCAAATGCTGTCCTTTTTTCATTATTTCAGGACATG
AGCGGTGCTGGCATGATACGTAGTAAAAAGTTCCAAAAGTGTTTGGAAGC
ACTCAAAGAACAAATTGTCATTCGTGATTGTGACAATAATAATTTGAATC
AAAAATGGAAATTCCAAGAACATCCTTATGAAAATGTCCCACCAGGTAGA
CCTAGAAAGTGGATGTAA

Coding sequence (CDS) from alignment at sc0000005_pilon:1193937..1197654-

>XLOC_038822 ID=XLOC_038822|Name=XLOC_038822|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4002bp|location=Sequence derived from alignment at sc0000005_pilon:1193937..1197654- (Clytia hemisphaerica_ch_hm2_pilon)
ATGTATAGACTGATAAAGCGATACCTTGTTACAGTGATTGTGATTTTTTG
TTTGTGCTGGTTATGTATTGATTTAATGTGGGTGCAGTGGAAAAAAGAAA
GCACTTCCCATGATAAACCAAATCAAAAATTTAAAAATGATTATAATGAT
GAGGACTACATACGGCATATAAAGAGGAGACGGAAATTTCCCACTACAAC
TGAAGATAATTATAAGGATGAAAATAATATCAATAATGAAGACAATCATG
CTAACAAAATAAAATTCCTGAATGACGGTAATTCTAAAGAAAAGAAATTT
GAACATGTAAAGGAACATCCTAACCTAGAAGTTCCTGGAGATATAGAGAC
AGATATTAAACCTGAGGAACCTAAAATTAAAGTTGAAGACAACATGGTAT
CAATAGATTATTTCAAGCAATTTTATAAATATTCATTGGATCCACAACCT
GGTAGTGCTGGTATGAATGGTGCAGCTGTTAAAAATTCTATGGATGAAAA
AGCTGCAGAAGATTTAGGATTTAAAAGATATAGTTTCAATGAACTTTCAA
GCTCCAAAATTTCTTTAGAGAGATCTGTACCTGATAATAGGGAAGATGCA
TGTATAGACTGATAAAGCGATACCTTGTTACAGTGATTGTGATTTTTTGT
TTGTGCTGGTTATGTATTGATTTAATGTGGGTGCAGTGGAAAAAAGAAAG
CACTTCCCATGATAAACCAAATCAAAAATTTAAAAATGATTATAATGATG
AGGACTACATACGGCATATAAAGAGGAGACGGAAATTTCCCACTACAACT
GAAGATAATTATAAGGATGAAAATAATATCAATAATGAAGACAATCATGC
TAACAAAATAAAATTCCTGAATGACGGTAATTCTAAAGAAAAGAAATTTG
AACATGTAAAGGAACATCCTAACCTAGAAGTTCCTGGAGATATAGAGACA
GATATTAAACCTGAGGAACCTAAAATTAAAGTTGAAGACAACATGGTATC
AATAGATTATTTCAAGCAATTTTATAAATATTCATTGGATCCACAACCTG
GTAGTGCTGGTATGAATGGTGCAGCTGTTAAAAATTCTATGGATGAAAAA
GCTGCAGAAGATTTAGGATTTAAAAGATATAGTTTCAATGAACTTTCAAG
CTCCAAAATTTCTTTAGAGAGATCTGTACCTGATAATAGGGAAGATGCCT
GTTTCAATGTGAAATATCCAACAGATTTACCAGATGCAAGTGTTATCATT
ATCTTTCACAATGAGGCTTGGTCTACACTTATGAGAACTGTCCATACTGT
TATTGCAAGATCTCCACCACAATACCTACGTGAAGTTATCTTAGTTGACG
ATTGCAGTGTGACAGATGATTACACTGTTTCAATGTGAAATATCCAACAG
ATTTACCAGATGCAAGTGTTATCATTATCTTTCACAATGAGGCTTGGTCT
ACACTTATGAGAACTGTCCATACTGTTATTGCAAGATCTCCACCACAATA
CCTACGTGAAGTTATCTTAGTTGACGATTGCAGTGTGACAGATGATTACA
CTCACTTGGGAAAAAGATTGCAAGAATATGTTGATTCTCTTCCAAAAGTG
AAATTATTTCGTTCACCAAAACGTGTTGGGTTAACACAAGCAAGATTAAT
TGGTGCTGATAATGCAGTTGGTGATGTTTTGATTTTCCTTGACTCACATT
GTGAATGCACAGACGGATGGATTGAGCCTCTACTTGCCAGATTAAAAGAA
AATCCCAAGATGTCAGCTGTTCCTGATATTGAAGTTATCAAATGGAAAAC
CTTTGAATATGTCCAATCAAAGGGCTCAAGAAATCGTGGCGTCTTCAGTT
GGGATTTGATATTCCATTGGAGTGGTTTACCAATGCATGAAATTAAGAGA
AGAAGAACACAAGCTGATCCAATCAACTCACTTGGGAAAAAGATTGCAAG
AATATGTTGATTCTCTTCCAAAAGTGAAATTATTTCGTTCACCAAAACGT
GTTGGGTTAACACAAGCAAGATTAATTGGTGCTGATAATGCAGTTGGTGA
TGTTTTGATTTTCCTTGACTCACATTGTGAATGCACAGACGGATGGATTG
AGCCTCTACTTGCCAGATTAAAAGAAAATCCCAAGATGTCAGCTGTTCCT
GATATTGAAGTTATCAAATGGAAAACCTTTGAATATGTCCAATCAAAGGG
CTCAAGAAATCGTGGCGTCTTCAGTTGGGATTTGATATTCCATTGGAGTG
GTTTACCAATGCATGAAATTAAGAGAAGAAGAACACAAGCTGATCCAATC
AAATCCCCAACAATGGCAGGAGGATTATTCGCCATTGATCGGAAGTTCTT
CTTTGAGAGTGGAGCTTATGACAGGGGTTTGACTTTTTGGGGTGGTGAAA
ACATAGAAATGTCGTTTAGAATCCCCAACAATGGCAGGAGGATTATTCGC
CATTGATCGGAAGTTCTTCTTTGAGAGTGGAGCTTATGACAGGGGTTTGA
CTTTTTGGGGTGGTGAAAACATAGAAATGTCGTTTAGACTTTGGATGTGT
GGTGATGGTATTGAGATTCTACCTTGTTCTCGGGTTGGGCATGTATTCCG
CGAAACAGTTCCCTACAAAGTTCAAGGTGGCTCTCTCACTCATAACACCA
TCCGGGTAGCAGAAGTTTGGCTTGATGAATTCAAAGAAATTTACTATATG
CTTCATGCTGGAGCTGCGAAACCAGAGATGGGTGGAGATGTGTCTGAACG
TATAGCACTTCGTGAAAAGATGCAATGTAAAAGCTTCAAATGGTTCTTGC
AAAATGTTTATCCGGAAATACATATTCCAGATAGATATCCTTATGGACGG
GGAGATCTTTGGATGTGTGGTGATGGTATTGAGATTCTACCTTGTTCTCG
GGTTGGGCATGTATTCCGCGAAACAGTTCCCTACAAAGTTCAAGGTGGCT
CTCTCACTCATAACACCATCCGGGTAGCAGAAGTTTGGCTTGATGAATTC
AAAGAAATTTACTATATGCTTCATGCTGGAGCTGCGAAACCAGAGATGGG
TGGAGATGTGTCTGAACGTATAGCACTTCGTGAAAAGATGCAATGTAAAA
GCTTCAAATGGTTCTTGCAAAATGTTTATCCGGAAATACATATTCCAGAT
AGATATCCTTATGGACGGGGAGATGTTTTGAATATGGGTACCAACAAATG
CTTAGACTCCCTCAAACATGACAACAAAGGAGGAGAGCCAGGTTTATTCC
CTTGCCATCATCAAGGCTCAAATCAAGTTTTGAATATGGGTACCAACAAA
TGCTTAGACTCCCTCAAACATGACAACAAAGGAGGAGAGCCAGGTTTATT
CCCTTGCCATCATCAAGGCTCAAATCAATTCTTCATACACACGCTTAAAT
ATGAAATCACGCAAGGAGATCTGTGTTTCGATTTGGCGGCAGGAACTGAT
AGTTCGAAAGTGAAACTGGTCACGTGTCATCACCTTGGTGGAAATCAAGC
ATTTGAACATCTCAAGTTCTTCATACACACGCTTAAATATGAAATCACGC
AAGGAGATCTGTGTTTCGATTTGGCGGCAGGAACTGATAGTTCGAAAGTG
AAACTGGTCACGTGTCATCACCTTGGTGGAAATCAAGCATTTGAACATCT
CAAGGACATGAGCGGTGCTGGCATGATACGTAGTAAAAAGTTCCAAAAGT
GTTTGGAAGCACTCAAAGAACAAATTGTCATTCGTGATTGTGACAATAAT
AATTTGAATCAAAAATGGAAATTCCAAGAACATCCTTATGAAAATGTCCC
ACCAGGTAGACCTAGAAAGTGGATGTAAGACATGAGCGGTGCTGGCATGA
TACGTAGTAAAAAGTTCCAAAAGTGTTTGGAAGCACTCAAAGAACAAATT
GTCATTCGTGATTGTGACAATAATAATTTGAATCAAAAATGGAAATTCCA
AGAACATCCTTATGAAAATGTCCCACCAGGTAGACCTAGAAAGTGGATGT
AA

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_038822	XLOC_038822-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000005_pilon	genome	sc0000005_pilon:1193937..1197654 -

Properties


Property Name	Value
Aaloc	1843-2016:175
Aaloc	1705-1842:574
Aaloc	1603-1704:940
Aaloc	1285-1602:1571
Aaloc	1168-1284:2061
Aaloc	793-1164:2634
Aaloc	616-789:2933
Aaloc	286-612:3449
Aaloc	1-270:3719

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XLOC_038822 (mRNA) -