XLOC_038808 (mRNA) -

Overview


Name	XLOC_038808
Unique Name	XLOC_038808
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000117_pilon:74894..77734-
coding sequence from alignment at sc0000117_pilon:74894..77734-

mRNA from alignment at sc0000117_pilon:74894..77734-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_038808 ID=XLOC_038808|Name=XLOC_038808|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2841bp|location=Sequence derived from alignment at sc0000117_pilon:74894..77734- (Clytia hemisphaerica_ch_hm2_pilon)
TTTTGCATACAGGATTTGTGTAACCGAAAAGCAAACCTTGTAGAACCAAA
ACAGATATTGCCGCTACCAGAAACTGTCGTTAAATCATTTTCAAAGACGT
TAGAAAAGGACGAGGAAACTGTCGAAAAAATGACCGACAAAACCGAGCTA
TTGATAACTAGGTCGGATAAGGAAAACAATAAAATAAACGAAAAAAAGGA
ACCATGTTGTGATCAACCAATTAAAAAGTCAAGAACTCAATGTCAACATT
CGGATGGGTTCACTTTAGAAGAACAGTTAGTGGACAATATCTTGGGTGTT
ATTTCGTTTGGAGATAACCCTACTGGTGGAAACAGCAGACCTGGTAATCA
ATATCAGAAAATGAGCAAATCTAACAAACAGAATTTTAAGGTAAAGAAAA
TTGTTAACAATAAAACAGACAATGACTTGGTGAGCCGAAACCGATACGCC
ATGGAGTTCCCGAGACATAATTGGTTGTTGGAACGTTTGAAATCTGAGAA
TAAGATCAACGAAGGCGTCATAAAGGTTGAGGAGAAAAAACTCCAGGAGA
AATTAAATAAAGAAAAAGCAGAGGAGAGATTACGTGAAGAACAAAAACAG
AAAGAGGAGAAAGTAAAAGCGAAAAAGCTTGAAGAGACTTTACAAAAACG
GAAGGAATCTGAGACACGTATTCGACCAAACTCGGCAAAATCAGATTCTG
AAATTGAGCAAAAGAAACATACTGATGACGAACCATTGAAAAGATGTTAT
TCTTATGACCCGATGATTTCAAAAAACCAAGAAGATATAGGCATCAAAAT
CCTCAGTGTTGTGTCATTATCGAAAGATGCACCGATATCCATCAAGAGTG
GTCAAAGTACATCAATGAACCAACAACCAGTCGTCTTCCAACCAAAAATC
ATACAAAATGACGATCCCGTCGGTACACAAAACGACCGAGTTTTACCTTT
CCAACAAGATGTTAATGACGATGACGTCATTATTTGTAATCACAAAGACA
CAATCAATTTTTCTGGAAATGATTGTGAATCACGAAGTGCGTTCAAAAAA
TGTGATCGGTTTGACGAGAAGGATATCCAAGTAGTTCGTCTTATCAACAA
AGAATCAGAAATATGCATCGGTAATCAACCTACCTACACATCGGACGATT
TAACGTCAAAAGCCGACAACCGTCATTCGCCATTTAATCATTCCACCACA
GAAATCAAAATACCAAAACCACGAAATTTATACCAAATGCTGACCGACTC
TCCACCATCTGTTCATGACGATTTCCAGGAATCAAGAACTAAACAATCAC
CAAACAGTCCAAATACATCAAAACCAGAACCTCAAACAGGCCTTGTCATA
CCAGAACCTCAAAGAGACCTTGTCATACCAGAACCTCAAAGAGACCTTGT
CATACCAGAACCTCAAAGAGACCTTGTCATACCAGAACCTCAGAGAGACC
TTGTCATACCAGAACCTCAAGCACTGGTCAATGAAAAGATCAAACCAAGA
ACATTGATAGATCTTACAATCCCTGAACCTAGAACTGAGAAAACATCACC
AGCACATCAACCATTGACCAAAGGGCAAATCAAACCAAGAGAATCAACAG
ATTTACCAATGGATCTTATTATTCCTGAGCCTCAGACTTTAACCAAAGAT
CAACACAAGCTAATGAATCCAACTTCAAGTACTTCAATCGTTATTCCCAA
ACCACGTTTCATTACCAACGAAGAAAAATTACAAAAACTCTCAACTTTAA
AATCATTTATCAAATCGAGAACATTATCTCCAGATACCAAAGAATCAACA
GATATACACTGCTCAAAAGATGGACTTTCGAAAGAGATGGTCGATGCAGA
GTCAATAACAAATTTACCAGTGCTGTTAGATAAATCAACAACACATACGG
CAAAACCGACCCAAAATGATCTCGATCGGACGTTGTCGCCAGAAGAATTA
ATCAAACCGAGACAGCCACCAATAAAAACAACTTATCAACCATTAAGTAG
GGATACGCCCACAACTGTCAACAAATCGACGCCTGCCACCCTCAATAAAC
CGCCCACATCAACCATCCTCTCAAACCATCCGTACACTCCAAACCGTGAT
ATAAGTGATTTGAAAGACCTCTTACGGAATCCCTTACCGAAATTCCCACC
AAAACAATCACTGGTTAGTTCACAATATCAACCACATGATGATATGAGAC
ACGTGTCAAAGAAAATGGGAAGATCAGCAGATTATCCTTTCAATGATGGT
AGAGGACTCACCAGAAACATTTTGTATACAAAGCCCAGATCAATGAGCGA
ACGAGAATTGGTACCCAAACGGTCACAAATGGATGACTACCCATCTCCAA
CAAGGCAATCATTCAAACGTTCACCAACTACAAGTGATTACCTGACATTG
CGCAATCTCCGTCACTCAACTTCTTCATCAATCGAATACGACAACTTAAC
TTCACTGAAATTCACCGGAAATCCGCATTCTGAAGCTCAAGACTCGAAAC
AACAAATATGGAACGCTCAACTACCTATCAGACCGATATCACCCGACCGA
CATTTAACAAACGACACTCGTAAGCGTCTTTACGAACAAATAACTAACAA
ACAGCCGTCAATGATGCGACTTCACCGGCGATTACCCGATATACCGTCAA
AACACCGTCTGACAGAGGAAAGATATCGGAATCAATTCGCTACGCGTGGC
AAAGAACCACAACCATCTCTTTTGCGCTCTCCGGATAAATCAAGGCGTGA
CGTTTATTCATTCATGTCTGATCTCCAACGCAGACACGACGAAGAACATG
CAATCCAGAAAAGCAGGGTAAGCAGCTTTGTTTATCATTGA

Coding sequence (CDS) from alignment at sc0000117_pilon:74894..77734-

>XLOC_038808 ID=XLOC_038808|Name=XLOC_038808|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5466bp|location=Sequence derived from alignment at sc0000117_pilon:74894..77734- (Clytia hemisphaerica_ch_hm2_pilon)
TTTTGCATACAGGATTTGTGTAACCGAAAAGCAAACCTTGTAGAACCAAA
ACAGATATTGCCGCTACCAGAAACTGTCGTTAAATCATTTTCAAAGACGT
TAGAAAAGGACGAGGAAACTGTCGAAAAAATGACCGACAAAACCGAGCTA
TTGATAACTAGGTCGGATAAGGAAAACAATAAAATAAACGAAAAAAAGGA
ACCATGTTGTGATCAACCAATTAAAAAGTCAAGAACTCAATGTCAACATT
CGGATGGGTTCACTTTAGAAGAACAGTTAGTGGACAATATCTTGGGTGTT
ATTTCGTTTGGAGATAACCCTACTGGTGGAAACAGCAGACCTGGTAATCA
ATATCAGAAAATGAGCAAATCTAACAAACAGAATTTTAAGGTAAAGAAAA
TTGTTAACAATAAAACAGACAATGACTTGGTGAGCCGAAACCGATACGCC
ATGGAGTTCCCGAGACATAATTGGTTGTTGGAACGTTTGAAATCTGAGAA
TAAGATCAACGAAGGCGTCATAAAGGTTGAGGAGAAAAAACTCCAGGAGA
AATTAAATAAAGAAAAAGCAGAGGAGAGATTACGTGAAGAACAAAAACAG
AAAGAGGAGAAAGTAAAAGCGAAAAAGCTTGAAGAGACTTTACAAAAACG
GAAGGAATCTGAGACACGTATTCGACCAAACTCGGCAAAATCAGATTCTG
AAATTGAGCAAAAGAAACATACTGATGACGAACCATTGAAAAGATGTTAT
TCTTATGACCCGATGATTTCAAAAAACCAAGAAGATATAGGCATCAAAAT
CCTCAGTGTTGTGTCATTATCGAAAGATGCACCGATATCCATCAAGAGTG
GTCAAAGTACATCAATGAACCAACAACCAGTCGTCTTCCAACCAAAAATC
ATACAAAATGACGATCCCGTCGGTACACAAAACGACCGAGTTTTACCTTT
CCAACAAGATGTTAATGACGATGACGTCATTATTTGTAATCACAAAGACA
CAATCAATTTTTCTGGAAATGATTGTGAATCACGAAGTGCGTTCAAAAAA
TGTGATCGGTTTGACGAGAAGGATATCCAAGTAGTTCGTCTTATCAACAA
AGAATCAGAAATATGCATCGGTAATCAACCTACCTACACATCGGACGATT
TAACGTCAAAAGCCGACAACCGTCATTCGCCATTTAATCATTCCACCACA
GAAATCAAAATACCAAAACCACGAAATTTATACCAAATGCTGACCGACTC
TCCACCATCTGTTCATGACGATTTCCAGGAATCAAGAACTAAACAATCAC
CAAACAGTCCAAATACATCAAAACCAGAACCTCAATTTTGCATACAGGAT
TTGTGTAACCGAAAAGCAAACCTTGTAGAACCAAAACAGATATTGCCGCT
ACCAGAAACTGTCGTTAAATCATTTTCAAAGACGTTAGAAAAGGACGAGG
AAACTGTCGAAAAAATGACCGACAAAACCGAGCTATTGATAACTAGGTCG
GATAAGGAAAACAATAAAATAAACGAAAAAAAGGAACCATGTTGTGATCA
ACCAATTAAAAAGTCAAGAACTCAATGTCAACATTCGGATGGGTTCACTT
TAGAAGAACAGTTAGTGGACAATATCTTGGGTGTTATTTCGTTTGGAGAT
AACCCTACTGGTGGAAACAGCAGACCTGGTAATCAATATCAGAAAATGAG
CAAATCTAACAAACAGAATTTTAAGGTAAAGAAAATTGTTAACAATAAAA
CAGACAATGACTTGGTGAGCCGAAACCGATACGCCATGGAGTTCCCGAGA
CATAATTGGTTGTTGGAACGTTTGAAATCTGAGAATAAGATCAACGAAGG
CGTCATAAAGGTTGAGGAGAAAAAACTCCAGGAGAAATTAAATAAAGAAA
AAGCAGAGGAGAGATTACGTGAAGAACAAAAACAGAAAGAGGAGAAAGTA
AAAGCGAAAAAGCTTGAAGAGACTTTACAAAAACGGAAGGAATCTGAGAC
ACGTATTCGACCAAACTCGGCAAAATCAGATTCTGAAATTGAGCAAAAGA
AACATACTGATGACGAACCATTGAAAAGATGTTATTCTTATGACCCGATG
ATTTCAAAAAACCAAGAAGATATAGGCATCAAAATCCTCAGTGTTGTGTC
ATTATCGAAAGATGCACCGATATCCATCAAGAGTGGTCAAAGTACATCAA
TGAACCAACAACCAGTCGTCTTCCAACCAAAAATCATACAAAATGACGAT
CCCGTCGGTACACAAAACGACCGAGTTTTACCTTTCCAACAAGATGTTAA
TGACGATGACGTCATTATTTGTAATCACAAAGACACAATCAATTTTTCTG
GAAATGATTGTGAATCACGAAGTGCGTTCAAAAAATGTGATCGGTTTGAC
GAGAAGGATATCCAAGTAGTTCGTCTTATCAACAAAGAATCAGAAATATG
CATCGGTAATCAACCTACCTACACATCGGACGATTTAACGTCAAAAGCCG
ACAACCGTCATTCGCCATTTAATCATTCCACCACAGAAATCAAAATACCA
AAACCACGAAATTTATACCAAATGCTGACCGACTCTCCACCATCTGTTCA
TGACGATTTCCAGGAATCAAGAACTAAACAATCACCAAACAGTCCAAATA
CATCAAAACCAGAACCTCAAAGAGACCTTGTCATACCAGAACCTCAAGCA
CTGGTCAATGAAAAGATCAAACCAAGAACATTGATAGATCTTACAATCCC
TGAACCTAGAACTGAGAAAACATCACCAGCACATCAACCATTGACCAAAG
GGCAAATCAAACCAAGAGAATCAACAGATTTACCAATGGATCTTATTATT
CCTGAGCCTCAGACTTTAACCAAAGATCAACACAAGCTAATGAATCCAAC
TTCAAGTACTTCAATCGTTATTCCCAAACCACGTTTCATTACCAACGAAG
AAAAATTACAAAAACTCTCAACTTTAAAATCATTTATCAAATCGAGAACA
TTATCTCCAGATACCAAAGAATCAACAGATATACACTGCTCAAAAGATGG
ACTTTCGAAAGAGATGGTCGATGCAGAGTCAATAACAAATTTACCAGTGC
TGTTAGATAAATCAACAACACATACGGCAAAACCGACCCAAAATGATCTC
GATCGGACGTTGTCGCCAGAAGAATTAATCAAACCGAGACAGCCACCAAT
AAAAACAACTTATCAACCATTAAGTAGGGATACGCCCACAACTGTCAACA
AATCGACGCCTGCCACCCTCAATAAACCGCCCACATCAACCATCCTCTCA
AACCATCCGTACACTCCAAACCGTGATATAAGTGATTTGAAAGACCTCTT
ACGGAATCCCTTACCGAAATTCCCACCAAAACAATCACTGGTTAGTTCAC
AATATCAACCACATGATGATATGAGACACGTGTCAAAGAAAATGGGAAGA
TCAGCAGATTATCCTTTCAATGATGGTAGAGGACTCACCAGAAACATTTT
GTATACAAAGCCCAGATCAATGAGCGAACGAGAATTGGTACCCAAACGGT
CACAAATGGATGACTACCCATCTCCAACAAGGCAATCATTCAAACGTTCA
CCAACTACAAGTGATTACCTGACATTGCGCAATCTCCGTCACTCAACTTC
TTCATCAATCGAATACGACAACTTAACTTCACTGAAATTCACCGGAAATC
CGCATTCTGAAGCTCAAGACTCGAAACAACAAATATGGAACGCTCAACTA
CCTATCAGACCGATATCACCCGACCGACATTTAACAAACGACACTCGTAA
GCGTCTTTACGAACAAATAACTAACAAACAGCCGTCAATGATGCGACTTC
ACCGGCGATTACCCGATATACCGTCAAAACACCGTCTGACAGAGGAAAGA
TATCGGAATCAATTCGCTACGCGTGGCAAAGAACCACAACCATCTCTTTT
GCGCTCTCCGGATAAATCAAGGCGTGACGTTTATTCATTCATGTCTGATC
TCCAACGCAGACACGACGAAGAACATGCAATCCAGAAAAGCAGGGTAAGC
AGCTTTGTTTATCATTGAAGAGACCTTGTCATACCAGAACCTCAAGCACT
GGTCAATGAAAAGATCAAACCAAGAACATTGATAGATCTTACAATCCCTG
AACCTAGAACTGAGAAAACATCACCAGCACATCAACCATTGACCAAAGGG
CAAATCAAACCAAGAGAATCAACAGATTTACCAATGGATCTTATTATTCC
TGAGCCTCAGACTTTAACCAAAGATCAACACAAGCTAATGAATCCAACTT
CAAGTACTTCAATCGTTATTCCCAAACCACGTTTCATTACCAACGAAGAA
AAATTACAAAAACTCTCAACTTTAAAATCATTTATCAAATCGAGAACATT
ATCTCCAGATACCAAAGAATCAACAGATATACACTGCTCAAAAGATGGAC
TTTCGAAAGAGATGGTCGATGCAGAGTCAATAACAAATTTACCAGTGCTG
TTAGATAAATCAACAACACATACGGCAAAACCGACCCAAAATGATCTCGA
TCGGACGTTGTCGCCAGAAGAATTAATCAAACCGAGACAGCCACCAATAA
AAACAACTTATCAACCATTAAGTAGGGATACGCCCACAACTGTCAACAAA
TCGACGCCTGCCACCCTCAATAAACCGCCCACATCAACCATCCTCTCAAA
CCATCCGTACACTCCAAACCGTGATATAAGTGATTTGAAAGACCTCTTAC
GGAATCCCTTACCGAAATTCCCACCAAAACAATCACTGGTTAGTTCACAA
TATCAACCACATGATGATATGAGACACGTGTCAAAGAAAATGGGAAGATC
AGCAGATTATCCTTTCAATGATGGTAGAGGACTCACCAGAAACATTTTGT
ATACAAAGCCCAGATCAATGAGCGAACGAGAATTGGTACCCAAACGGTCA
CAAATGGATGACTACCCATCTCCAACAAGGCAATCATTCAAACGTTCACC
AACTACAAGTGATTACCTGACATTGCGCAATCTCCGTCACTCAACTTCTT
CATCAATCGAATACGACAACTTAACTTCACTGAAATTCACCGGAAATCCG
CATTCTGAAGCTCAAGACTCGAAACAACAAATATGGAACGCTCAACTACC
TATCAGACCGATATCACCCGACCGACATTTAACAAACGACACTCGTAAGC
GTCTTTACGAACAAATAACTAACAAACAGCCGTCAATGATGCGACTTCAC
CGGCGATTACCCGATATACCGTCAAAACACCGTCTGACAGAGGAAAGATA
TCGGAATCAATTCGCTACGCGTGGCAAAGAACCACAACCATCTCTTTTGC
GCTCTCCGGATAAATCAAGGCGTGACGTTTATTCATTCATGTCTGATCTC
CAACGCAGACACGACGAAGAACATGCAATCCAGAAAAGCAGGGTAAGCAG
CTTTGTTTATCATTGA

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_038808	XLOC_038808-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000117_pilon	genome	sc0000117_pilon:74894..77734 -

Properties


Property Name	Value
Aaloc	1348-2745:1399
Aaloc	106-1347:2749
Aaloc	1-93:2842

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XLOC_038808 (mRNA) -