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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000117_pilon:14180..18284+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_038807 ID=XLOC_038807|Name=XLOC_038807|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4105bp|location=Sequence derived from alignment at sc0000117_pilon:14180..18284+ (Clytia hemisphaerica_ch_hm2_pilon)
atggcTGATTTGAGTGCTCGAAGACAAATTTCAGAAAGTCTAAAGACACA
GTCCTGGCAACAAGTTTCCATTTCCAAGGATGACACCACTATCGATAGAG
GACAAGATTTGGTATTGAAGTATTACTTTGATCGATTACGTCACTCGTAT
GACGTCATTGTATATGATgggaaaacattacgtcatgagtCGGTAGCAAA
TGAGGAAGACTTCTTAGCCAAAAGTAAGGTAAGTGGCAACCTAAATTCGA
AGGCTGATTGTTGGTCCTTCTTTTACACAAGTAGTCTTTGATCATTTCAA
AATTCGAGATTTTTATTTGCCCTTGTTttgatcacatgatcaaaattCAC
ATCAGACGTGGTCAATGAGTTTCATTGTAATGTGGTTGTTGTTATATGAC
GATTAGCCAGCTAGAACAGTGTAGAGTTTACGATAATTTATGAAGAATCT
TTTTTGCGTTCCAAGAGCTTGTTAATGATTTAACATTGATTTGACTTTTA
AAGTATcttgtcaacttttttttctgaagaTTCTATTCATTAGATTTGTT
TCTTTGCAGCTTTTCAATCCGAACCTGGAAGCAGAATCCATGTCGATACT
CAACGAATTATCCAATTGTCTCCAACAATGCCAAAAAGAATCGACCGGAC
TGTCATTCCAAGTAAATCTTCTGATTTTCATTCATAGCTTCAATAACAGA
AAACAATAGATGATAAAATAGAGTCGATTTTTTACATTGATATCCTAGTA
ATCTAGTACCTTTAGAAAGCCTTTCGAtttttttACATCTGCCATCGTTC
CTTAAAATTGAGGAGAGTTAAAAGTATAATCGAATGAGCAAAAcctctat
ttttttttacttaagctACAAAGTAAAGATATGACACTTTGAAATCCCAC
CAAAATTAGTATTGTGCTTAGGGGCTGTTCATATGGAAGCAGGCTGGTTC
GGCTAGCTGAGTTGGAGGGGGGTCAAGTGATCTATCTTTGGCCACCTCCA
TATAAACAACCCCTATAAAGTACACCTCAATATGAACAGAACCTTTCACT
GTTACATCAAATGTTTTTTAACTAAGAGTTACAAATATATAACTTACTTA
TCTCGtatttggaaagatattcaaaCAAAAGATTTAGAGTTTTTGCTCAT
GGTGGAGGCATCAACAGGCTAAAAATGTCAAACCATTTGATTATCCCTTC
AAGCGTTGATGGCCAGAACACAGTATTTTTGACAAGCCTTTCAAACCCAA
AAACTTGTGTACCCTATTTATTATTGATTGCTATGCGTTTTTTGCCAAAG
TCAGGCTAGAGTGTATTTTGATTTGCAATTTAATCCTGAGACCTCAACTT
GTGAAAAGCAAAAAcatcttttcatttttatttgaatttcttttacaGCC
ATTATCATATTGAGACATGGTAgatatgaaataaaaagataGATATATTT
CACTAGGTTGAGGAGGACGTCTTAAAAATGAACATCAAAACCAAACTGAA
ATCAGGAATCCCTTTTGCGTGGACCTTCACACTGAAAGAAGCCACGACTC
ATATGGTGAGAGGATGATAAAAAAGACTTTCAGGCATGCCAATTGTCTAA
GTTCTACTTTGATTTGGATATTAGGGTGTCCAACAAAATGAGGAAACGTG
CTgctatttttcatcttcattgccATTCGCTTCGATGAGAGATTTCTACC
TGAGAGGTCCATTTTACTTCCGAAAGAATAAGAAAGTATAATACCTTCTT
TCATCACAAACGAGTCTtatctatttttcgaaatctcGCTATACTTTCAC
AGTACGACCGgaaaataattataataaaaGTAATTCCaatccaaatttaa
aaaaaaatcctgaTAATTTTTGGCAcgttttaaaaataaccaaaaacttc
aaattcacCTTACCTTATTCTGTATTAGCATATTATATATACGGCATATA
TTAGCATATTCCAGCttacattgggctcttccagaaaatatccCTCCGTA
CATTGGGGTGGAGgatagtgtccgggggtagtgaaaaatctacaaattta
tCTTGTCTGGGGGGTAAAATTGCTCTGTTTGGTGATAATTTTTCTCTGTT
Tgagggtgattttgaatgtccggggggttagacctgctgtctgggggggt
caaaagtcacaatgtccggggggtaaatttcaaaaaaatgttatatcctc
caccccctctCCCGATTCAAAAAGCCCATTGTGCAAATTTTCGGCGAAAT
TTTCGGCTTCAAAAGTAGTCGTAAAAAAGTCTCTTGTTTTACAGATTATA
GAGCATTTGGTACAACCATTAGCAATCTTGACCTCCGAACTCAATCGAAG
GCAACAAGAATCATTTTATATGTTGGAAAGGAAAGATAGAGAGCTTCAAG
ATTATAAAGACCAAGGGGCGGTTGCCAGTAGACGTAAGAAAGATTTtgtc
tgatttttttaaaatgtaatttgTTGGTGAACTGATGACATAAATtatct
tttgttgaaaaaagttattttagCAGATGTTGTAAAAAGACCAGAGGCCG
aaatattttattgaaagaTGATTTGTTTTCCTGACTCtttaattttagtt
ttagttgATCATTTACTTTGATTCAAGAATTAAAGCTTGTATTTGTTTGG
ACTGGAATTAAGCTTAGAAGCTAAGCACGCCTTGTTCCCACGAATTCTGG
AGTAAACTtaacaataataacaacaacattATATATTTAAAGTGGCATGC
TCAGAAAAATTCAGAAGGTTTTAGACAGCTAAGGAGCTGCTCCCAAGAAG
GGCCACTAAACTTTAGTAGGTCCACTTTGTTTGAACATCTTAGATGTCTT
CACAAGGAAGGTCAACCTAATGAACGTACACAATGAATTACAATGCTATT
GTTTTTAGGTCATTTGGAAACGGTGCAATTTGATCGAGTCAATTTCCAAA
CTTCATCGAACGTACACCAGGTACCTTAATATATCACATCCGCAATTTTC
ATTATAGATTGCTTAaagtttcaaaatgaaaaagccAAGGACTGAAATTT
AAGTTAGCGGTTTCATCctacaaattttgtttcttttcattcaTAGACTT
TTTTGGATTCGTGTACCAACCCAACGTTGAATAGTTTAACGAaagatttg
aaagatcttcacaGAAATGTTGTTCTTAATACTGCGTCAAAGGATCTACC
AGCCGAAGgtaaatatttgattttatgTAACCTTAATAATGCTTCACTGA
ACTCTCGAATATACGATTCTTCAATGAACCGCTCCTTTGTATATTGAATT
tgtgtgaagaaattcaaagaatttctgtccaactttcttctttcaagaaa
tttgggtggcagagcagcatatgcatttcgttcTTATTAGGACGtcttta
ttatattatatatattgaGTTTGGAAAAATCTTGCCCTTTTATGAGcttg
tgttatttttttgtcCCTTCTCTACTAtacttttgcatttttcaagAAGA
AGTGTGAATGTTTTATGTAGGTCATTCTATTTTTATTAGCAGCGCCCCGT
GAGCAACAAAAGGCAGGACCTAGTATGTCTACATTCGATACCGTTCCCAT
TGTTGCTGGTCGTGGTGAAGACATCTCATCTTGGGGTAACGAGAAGCGTG
TTGGAGGTTCTTTCGTTCAAGATCAACTCGATGCTGGCAAAGATCCTCTA
CAACCTGACCCAGATACTCAGCCTGTTGTCGTTACTGAAGCTCTTTCTCC
ACAGGTGCTCCTTTTATCTTTGCGACGAATTAATTGGTCAATTCTCGTCC
TTTAGTCCACCATTGCTGTTCAAAATGAGGAAATCTATCTTTTATAATGA
TCAAACTAGGGAGATATATTTTAGAATCAAACATTTGTTGTGTCAAACTT
TCGTTGTCctgttatattttattgttttcctTACGCCCTGCTGGGTTATT
ACTTGCCCATCAAAAGATTCCTTGTCGCTTTTCTGAATagttaaatattt
tattttccacAGGAGGAAGAACTGAAACGTCGagaagctttaaagaagaa
gttgaatgaacaaactgagaagaaagccaaaaagaaaagaaaaatcaaat
tatga Coding sequence (CDS) from alignment at sc0000117_pilon:14180..18284+ >XLOC_038807 ID=XLOC_038807|Name=XLOC_038807|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2100bp|location=Sequence derived from alignment at sc0000117_pilon:14180..18284+ (Clytia hemisphaerica_ch_hm2_pilon)
atggcTGATTTGAGTGCTCGAAGACAAATTTCAGAAAGTCTAAAGACACA
GTCCTGGCAACAAGTTTCCATTTCCAAGGATGACACCACTATCGATAGAG
GACAAGATTTGGTATTGAAGTATTACTTTGATCGATTACGTCACTCGTAT
GACGTCATTGTATATGATgggaaaacattacgtcatgagtCGGTAGCAAA
TGAGGAAGACTTCTTAGCCAAAAGTAAGatggcTGATTTGAGTGCTCGAA
GACAAATTTCAGAAAGTCTAAAGACACAGTCCTGGCAACAAGTTTCCATT
TCCAAGGATGACACCACTATCGATAGAGGACAAGATTTGGTATTGAAGTA
TTACTTTGATCGATTACGTCACTCGTATGACGTCATTGTATATGATggga
aaacattacgtcatgagtCGGTAGCAAATGAGGAAGACTTCTTAGCCAAA
AGTAAGCTTTTCAATCCGAACCTGGAAGCAGAATCCATGTCGATACTCAA
CGAATTATCCAATTGTCTCCAACAATGCCAAAAAGAATCGACCGGACTGT
CATTCCAACTTTTCAATCCGAACCTGGAAGCAGAATCCATGTCGATACTC
AACGAATTATCCAATTGTCTCCAACAATGCCAAAAAGAATCGACCGGACT
GTCATTCCAAGTTGAGGAGGACGTCTTAAAAATGAACATCAAAACCAAAC
TGAAATCAGGAATCCCTTTTGCGTGGACCTTCACACTGAAAGAAGCCACG
ACTCATATGGTTGAGGAGGACGTCTTAAAAATGAACATCAAAACCAAACT
GAAATCAGGAATCCCTTTTGCGTGGACCTTCACACTGAAAGAAGCCACGA
CTCATATGATTATAGAGCATTTGGTACAACCATTAGCAATCTTGACCTCC
GAACTCAATCGAAGGCAACAAGAATCATTTTATATGTTGGAAAGGAAAGA
TAGAGAGCTTCAAGATTATAAAGACCAAGGGGCGGTTGCCAGTAGACATT
ATAGAGCATTTGGTACAACCATTAGCAATCTTGACCTCCGAACTCAATCG
AAGGCAACAAGAATCATTTTATATGTTGGAAAGGAAAGATAGAGAGCTTC
AAGATTATAAAGACCAAGGGGCGGTTGCCAGTAGACGTCATTTGGAAACG
GTGCAATTTGATCGAGTCAATTTCCAAACTTCATCGAACGTACACCAGGT
CATTTGGAAACGGTGCAATTTGATCGAGTCAATTTCCAAACTTCATCGAA
CGTACACCAGACTTTTTTGGATTCGTGTACCAACCCAACGTTGAATAGTT
TAACGAaagatttgaaagatcttcacaGAAATGTTGTTCTTAATACTGCG
TCAAAGGATCTACCAGCCGAAGACTTTTTTGGATTCGTGTACCAACCCAA
CGTTGAATAGTTTAACGAaagatttgaaagatcttcacaGAAATGTTGTT
CTTAATACTGCGTCAAAGGATCTACCAGCCGAAGCAGCGCCCCGTGAGCA
ACAAAAGGCAGGACCTAGTATGTCTACATTCGATACCGTTCCCATTGTTG
CTGGTCGTGGTGAAGACATCTCATCTTGGGGTAACGAGAAGCGTGTTGGA
GGTTCTTTCGTTCAAGATCAACTCGATGCTGGCAAAGATCCTCTACAACC
TGACCCAGATACTCAGCCTGTTGTCGTTACTGAAGCTCTTTCTCCACAGC
AGCGCCCCGTGAGCAACAAAAGGCAGGACCTAGTATGTCTACATTCGATA
CCGTTCCCATTGTTGCTGGTCGTGGTGAAGACATCTCATCTTGGGGTAAC
GAGAAGCGTGTTGGAGGTTCTTTCGTTCAAGATCAACTCGATGCTGGCAA
AGATCCTCTACAACCTGACCCAGATACTCAGCCTGTTGTCGTTACTGAAG
CTCTTTCTCCACAGGAGGAAGAACTGAAACGTCGagaagctttaaagaag
aagttgaatgaacaaactgagaagaaagccaaaaagaaaagaaaaatcaa
attatgaGAGGAAGAACTGAAACGTCGagaagctttaaagaagaagttga
atgaacaaactgagaagaaagccaaaaagaaaagaaaaatcaaattatga
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000117_pilon | genome | sc0000117_pilon:14180..18284 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 958-1050:4013 |
| Aaloc | 745-957:3542 |
| Aaloc | 631-741:3097 |
| Aaloc | 571-630:2911 |
| Aaloc | 430-567:2295 |
| Aaloc | 331-429:1457 |
| Aaloc | 229-330:560 |
| Aaloc | 1-228:1 |
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