XLOC_038776 (mRNA) -

Overview
NameXLOC_038776
Unique NameXLOC_038776
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000079_pilon:403310..411028-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_038776 ID=XLOC_038776|Name=XLOC_038776|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7719bp|location=Sequence derived from alignment at sc0000079_pilon:403310..411028- (Clytia hemisphaerica_ch_hm2_pilon)
CAGCCTTCATCATCTGACCTGAGAGTGGAACGAGATGTATTCTTATATAG AGCATACATTGCACAGGTATTTTCTTTATATTCATTTGTTGATACACTAT GTTTTTTATCGCTTTTTGATTTTATTTTTCACCCTCCAAGCTTCTTTTTT GATACAGCTCCAACTACAATGCACATTTTCAATTATAAATGTATGTAACT CGCAATATGTTCACTATTGTTCTTTGAATAATCAGAACTGAATATTTTTT AGGGAAAATATGGTCTCGTTTTGAGCGAAGTTACAGCATCATCGCCGCCA GAACTTCAAGGTGTTCGTCTTCTCGCTGATTACTTACAGAACCCTGGCAA AAAGTATGTCTTAATTCTCGTTGAAAAAAGTTGTGTTTTAGTAAATTTTC GCTCCTAAATTAAATTCCTTTTGGTTTCAAACACAGAAGTTTCTAGCTTG TACAATAACACAGTTTCTAGGAGATTTCCCTTCGGTATTTTGCCCAATAT GTATAATTTCTGCAAGGACTTCGCTGTTGGCCTGAAAAATTGCTATAAAG GACTCTTCTTATTGAACTAATTGTTTCAAGATTTTTCTATTTAAAAAATT TTTTTTCTTAGGGAGACTATCATAAAATCAATTGAATCAAAACTGAATGG AAGTGACTTTAGTGAATATTTTCTCCTTATGGCTAGTGTTATATATTTCC ATGAAAATGTAAGTCAACTTTGAGTGCTGAAAAAGTAAAATCAGATCCAA CGGTTGTGCACGCTACAGAAAGCAACCCATTAGATTTGTCTATTCATTTT ACCACCATTTTGGAGCAGAAAAAGCTTTTGATGCTAACCTGATGGAAGAA AGTATGAAAATTCCAACCAACTAATTCTTACTTTCTAACTAATTATTTTA AAACTTTCTTATATTATCCGTTGCCTCTTAAAGTTAGTTAAATTTTTATA TCCATATTTTAATCAAGGTGATTTTTATTCACTTTTTCCTTCATGTAGGA TACAGATTCGGCTCTTAGATGTTTGTTTCAATCGACTGCACTAGAATGGT ATGTAGTTTAGTGTATTTTTCTATTTATTAAGGCTAATGACGTTTTTAAA CCCTGGGCTAAATTATATCTGTTATCTTTGATCAGAGTTTCTTTAAAGAA GTCATTGCAGTATTAAAAGGTCAAATGGCGCTACATCAGTACAAGTATGC GAGGGAAATTACATCCAGCGCTCTCTATGCATTTACACTGCTATCGAGTA GTGCTTCTATTAGGGTACTTTTATAACGGGTACTTTTCAAATTAAAACTC TGATTAAAAGATTTTGGTTGGCAGAGATTGAGAAATTCTTCATCCAGGTT TTATATAAAGCCCATTGGCTAAGACACTTTAAAACTGTTTCATTAATAAA AGTAGGTTGAAGAGTAAATTCTATCAAATATATCAGGAAAGGAGATGTAG AGTAAAACTTTCTAGACAAAGTGCTTTGAATTAAAATCCTTACTTATTTT ATTATAACAGTTCTGCACTCTCTGTACAAATATACATCAGTCTTGACAGA TTGGACTTAGCAAAGTAAGTGAATATTTGTAGTTACGGAATAACCTCTAA TGCTTGCACTGTGCTTCCCATTTTTGTGAACAAAAGTATAGTCCTTTTTT AATTTGAGTTGTATTTTTCTGTTGTTATCTGACCATTTAACATATCTCCT ACCATTTTGCTAACTGAACATTTTCAAACAAAAGAAAGACTAACTTTCTC CCCATCTCGCGCTTCACAAGCACAAACATTGAAAAATCCTTTGTCAGCAT TAGAGGCGCACCCCTTCTTCTACCTTAAAAGAAGAAATTTTAGCGGAAAG AAAATTTGGCGGATTTCGCGGATTTGGCCAGAATCCGCCAAAATAAGTTC CCGCCAAAATTTCTTTTTTCCGCCATCCGCCAAATTAAATTCCCGCCAAA TTAAACTTTTTGAAAATATGATCTCTTTTAAGGTGGTTTTGCATTTTTTT TGCTGTTTTTACGCCATTTTAAGGATAAATTTTCAGCAAACGCCAAATTA AATTCCCGCCAAATTTAGTTTTTTCGTCCATCCGCCAAATTAAATTCCCT CTAAAAAGCTTTTTTGGCCATCCGCCAAATTAAATTCTCACCAAAATTTC TTCCTTTAAGGTATATCGGAAAAATGATATCTTAAATGTTTACAATAATT TTTTTCCTTTTTTTTTAGAACTGAAATTGGGAGGATGCAAGTGAGTATTC AACATGATTAACCTTCAAATTTGACAAAACACCAGATGTTCCCCAGTTCA TACAAGCCATATTTTAGAAGGACAGGGCAGCGTCCGTTGTTGGCCAAAAA GAACACTTTTTCCAGTTTTTTTCCGCTAAAAAGGCTGCTTTTAGCAAAAT GTTCGTTGTTTCAGGAGGGCAGCGTCTGATAACTGGAGGCTAAAAGGGCA TAAAAATGGCCTGATAAATGTAATTTATGCCCTCTACAAAAAATACAAAC TTGGACACATTGTAAATGTTGAGTATTATTGATCTTCAACCTTTCTTCGT ACTCTCTTCAGCAAAATGATGAAGATGCAACTCTTACTCAATTAGCCATG GCATGGTTCAATCTGGCTGTGGTTTGTTTTTGTCTATTATGTTTTACTCG TATCATTATCAGAGTTCATGTTCTATACTGCGCTCTTATGGTAAACTTTG AGCAATGCATGGCTGAGTGGTCTAAGGCATTAAGCCTACAAACCAACTCT TGAAATGAAATATCATCATCAACTAATATATTATGATATCCTTAATCTGA TGTCTAAAACACTTGTTGATATTTCAGGGTGGTGAGAAGTGTCAAGATGC TTATTACATTTTCCAAGAACTCATCGACAAATATTCCAGTACAATCTCCA TGTTGAATGCACAAGCAACTTGTTACATGAGAATGGGAAAGTTTGAAGAT GCAGACAGTAATTTACAGGAAGCTTTAGATAGAGTAAGTAAACTTTAAAA CTTTAAAGGGGAACTTAACATTTTTTTAAGATCATGCTTTTTTTGTCTTC AAGTACTAGACAATATAGTAGAACTTCGAAAATATATTATTTCCACTCTC AATCTATTTTTTGGTTGTTTTATTAAGATAAGTTCGCTTTAACGACCAAT TAAGTTTATTTTTTATGCAATAATAATGGATATTTTTATTATAATGTAAC AAAGTTCTAGGCGCACGAGGGCCTCTGGAACTGATCGTGATTATACAACG TATTTTACAATTGTCTTGTGTTGAATCTTTTCGGGTGTTTACTCCATGCA GTGTTGAGTCTTTCTTTGAAGACTTTGACTGTCTTTGCTTCAGCGACATC TTTTGGCAATTTATTCCAGGTTGGTATAGTTCGATAAAAGAAGGAATTCG TTTGTACACCACGGAGTCCATCGCTTCCAAAGTTTGGAATCATCTCAAAG TTGTGCCTTCTGTTTGGTCGCGTTCGACGGGCTATCTTGTTTGGGATGGT ATCTTTTTCGTAATAGTTGATGTGCTTGTAAAGTTGGACCATGTCACAAA AGTGTCTTCTAAACTCGAGCGTAGGAAGATCTAATTCACGCAATCGTTCT TCATAAGACATATTACGACATTTTTGAACAAGTTTTGTTGCCCGTCTTTG TACTCCTTCAATCAGATTTACGTGTTTACGTAGAAACGGAGACCATACTG ACTGAGCGTACTCCAGATGCGGGCGAACAAACGTACAATACAATGTTTTA AATGTACTTGTACTCATGTTTACAAATCCTCGATTGATTATGCCAAGTAT CGCGTTTGCTTTTTTGACTTGCTTTGCAATGTGTTCTTCAAATGTAAGTT CTGAGTCAATGAGGATTCCAAGATCTTTTTCTTCAAAGACGTGTTCCAAT TGGCGTCCATCTAGGGAATATGGATGAGCATGTTTGATGTTTCCAAACTT TCCTAGCGTCAGAACGTGACACTTTTCAGGATGGAATTGTAATAGCCAGT CTTTCGACCATTCTACAAGTGTGTCTATATCATTCTGAAGGGAAACAGAG TCTTCGATGCAGTTGACTTCTTTGAAGATTTTGGTATCATCAGCAAACAG TAGGATCAATGAGATGACCTTTTCAGGAAGATCATTGATGTATAGCACGA ACAGTATTGGTCCCAGTACACTACCCTGTGGAATACCACTCACTACAGGG TCTGTAGTCGAGAAGGACTGGTTCACTTTTACTGATTGTGTTCGACCTGT TAGAAATGACGTTATCCATTTTAAGATTGAACCGTTGATGCCATATGCTG ATAGTTTCTTGCATAGTCGACGGTGGGGTACAGTGTCGAAAGCCTTAGCA AAATCGAAGTAGATACTATCAACAACGTTTCCTTTCGAGATGCTCTCATA ACATTTATCCAGATAGTACAAAAGCTGTGTCACGGTTGAACGGTTGTTAA TGAAGCCATATTGTTTGTTCGATAAAAGATTATGATCGGAAAGGTGCTTC ATGATGTGTTTCCTCAGTATTGATTCCATTAATTTGCACACTACCGATGT CAAACTAACAGGTCGATAATTGACTGCCAAATTCTGAGGTCCCTTGTTTT TGTAGATAGGTGTGACATGTGCCACCTTCCAATCTCGTGGTAATGAGCCT TCAACTAAAGATTTGTTCATGATTACAGCTAAGGGTAGAGAAAGATAGTC AGATAATTCCGCTAGTATCCTAGGGTGTATTTCGTCTGGACCGAATGACT TATTATGGTTGAGCTCTTTCAATTGATTCTGTACCATCTCCTCAGAGATA TGAATATCTCCGATGGATGAATCAGTTCTCTTTTCAAATGCAGGAAGCTC ACCTACTGCTTCTTTTGTGAATACACTGCAGAACTGTCGTTGAAGTATAT TGGCTTTTTCGTGATCTTCATGCTTTAACGATGTTTTGACATTTGGTGAT TCAAGTAGTGATGAAACTGTACTAGAAGATTTCATCTTGTTACGCACATG TGACCAGAAGATCTTCGGTTTGGTCTTTGCGTTATCACAAATTCTTTGTT CGTAGTTCCTGTGAGCTTGTCTCATCAATTTGTTCACTCTGTTTCTTACA GGGGTGTATTTTGCTCGATTGTATTCTTTTTCTTCGGGCGGTGATTTCAT CCATTTCCGATGGAGGCGTCTCTTCTCTGCTATTTCTTTCCGAAGTTGAA CTCCAATAGGTATTTTACCTTTCTTCTTCCAGTTTTGACCACCGATGATC TTTATGGGTACAAAACGGTTTCGTATATCCAAAATCTTCTTTCGGAAAAG CTGCCAAAGCTCCTCGGTTGACTTAGAATTAGCCATCTCGGGAAATTGCT TGTACCAATCATCAGAGTTGAGACCTTGTTTCATTGCTTCAAAGTCTGCG TCCTCGTACTTGTATCTTTCTGATTTAGGTTTCAATACAGCATCACATTT GATACTGAAGGTCAAGCAACTATGATCGCTTAAACACAAAGGACTGAGAT ACTCTAGACATAGAGCTTGGTTAGCTTCACCTGTTAAAATGAGATCGACT AAAGATGGGTCGTCAGTCCCACGGCATCTGGTTGGTTCGTCTACACTTTG GTGGAGAAAGGAGTCGCGAAGGGCTTCAAGAAATTTTTCTTCTTTACTTT CCTCGAGATGTGGCGTCGTCCAATTTTTCCAATTGATTGTTGGGAAGTTA AAGTCCCCGACAAAGCATTTATGAGAGTATTTGTTGTTTGATGCGATATC TTTGATTAGATGATTCAACTTGTTGTTATTTTCAGCTGACGTGTCATTGT TCGTAGGGGAGCGATAGATACAGGAGAAGACCAGGAGATCGTTTCCGGAT AGACGAATTTCGATTGTGGATGCTTCATTGAAATTGACTTGGTTCATTGA TTGGTTGACATCGGTGACTAAATGTTTGATCGATGAATGAGCAAGAATAA TTATCCCGCGACCGATGCCAGTGGTCATGTTCGTATGACTGACACATTTA TAATGTTTAAGCTCGTGTTCGTGTAGCTCTCGCAGTCCACCGTGCTTTGG TTTCACCTCACATATCGCAATGATGTGGGGATGATGTTTCTCTACATCAA GCACAAGTTGTCGCTTCTTCTCGGGTGTTAGCGTGTCGGCGTTGCAATAA AAGATCCTGATTTCGTTGATCTTTATTTCAACATCATCTACTTGATTTAC GTTATGGTTTTCTTGATTAATTTTGCGACTGGATAGAGCTCAAAATTATT TTTTTTTTCTTTGCAGCACAATATTAGGATAAAATAAGTTTTCTTACACA TTTTAACAAAATATTACTGATTTTTCCTTTATACCTTCTTTTATAGCAAT ATATGGATCAAATTTTGCATTTTTTTACTAAGTCCATTCGCTTAAAGTGT TTTCTTTTTTTTGCGTCCACATAAAAACCACCCTCAAGGGAATTAGTTTA ATTATGCTGACATGGCTCCCACTTACTTGCACAAAAAAGAGTACATACTT AAAGGAAATAGACCTTTAACACTTCTCCCTTTCAATTGTAGGATAGTAAC AACCCAGAAACACTTTGTAATATGGCAGTTCTTGCGCAACATCTTGGTAA AGCACCAGAGGTATGTGATTTTGCAAGAAATGGATTTGCTTTGTTTTCCT CTATTCATGATATACACCACTGGGGAGTCTTCTAAAAAATTTTGAAATAT TCCACCCAATACGACGTCGCTTAAACAATAGAAAAAGTGACGTATTGAGT GGAACAAAAACAGAAAAGTTGCATAATTTCGTGAAGTCATTGCAGTTGTG CATATTATGAATATTTATTTTGTTTTCAACAAACAGGGTGTAACACCTGC CAAAGAAATTTTGTTTTTCTCAAAAAATCTAATATTTACAACCACATTTT TACAATCCTTGAAATAGTGGTAATTCAAGTTCTTTTTTATTTCGATTTCC TAGGTTAGCAACCGATTCATTTCACAATTACGAGCTGGTCACGATCGCCA TTGCTTCACCAAAGACTACCTGAAAAAGGTTACACGTTTTTTTTATAAGA ACATCCCAAATTTTTGAAGCCTTCGGATGCTCTCAACTTTTTCAGTTTCA AGCCTAAAAATGTTCTTATATTGACCATTTGTGGATATTTTTGTCCTAAG AAGTATGGTGTTTTTGAGTCCATAAAGCCTTAGAAAGTTCTTAACTTGTT CTTAACATTTTGACTATCGAAGCCTTATGCTCTTATATAGTTTGTTCTTA TTAAAAAGGTTGTTCATAGCTCTTTAATTCCTTGTGTAAAAAATTGTATC ATCTTTTGAAAGGGTTTCATAAAGTCTGTCTCAATATAATCTGCAGCGGA GACTAAAAAGAAAATTGATTTTTTCTTCGTTGTTTTTCGTCTTATTTTTT CCGAATTTATTTGATTATTTTCTATTTCATAATATATCCAACTTATTATC TTTTCAACAAGCACGAAACAACTCGAATTCCTGCGAATTCTATTAAAAGC CTTCTTTGTCTTCACTGCAGATCATATTGAGACAGACTTTAAATATTTAG GATTTGATTGTTTTCTTTTATGAGGCAAAATCAAAATTGTTCTGGCTGAT TTCGCTGTTGTCCCCAAATAATGCATATTTTTACAAATATTTTTTGTCAA TTTGATTTTTAGGAAGCAGATTTTGATCGTATCGTTGAAAGTTACGCTGC ATCGGCAAAAGCTCATTAA

Coding sequence (CDS) from alignment at sc0000079_pilon:403310..411028-

>XLOC_038776 ID=XLOC_038776|Name=XLOC_038776|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1614bp|location=Sequence derived from alignment at sc0000079_pilon:403310..411028- (Clytia hemisphaerica_ch_hm2_pilon)
CAGCCTTCATCATCTGACCTGAGAGTGGAACGAGATGTATTCTTATATAG
AGCATACATTGCACAGCAGCCTTCATCATCTGACCTGAGAGTGGAACGAG
ATGTATTCTTATATAGAGCATACATTGCACAGGGAAAATATGGTCTCGTT
TTGAGCGAAGTTACAGCATCATCGCCGCCAGAACTTCAAGGTGTTCGTCT
TCTCGCTGATTACTTACAGAACCCTGGCAAAAAGGAAAATATGGTCTCGT
TTTGAGCGAAGTTACAGCATCATCGCCGCCAGAACTTCAAGGTGTTCGTC
TTCTCGCTGATTACTTACAGAACCCTGGCAAAAAGGAGACTATCATAAAA
TCAATTGAATCAAAACTGAATGGAAGTGACTTTAGTGAATATTTTCTCCT
TATGGCTAGTGTTATATATTTCCATGAAAATGGAGACTATCATAAAATCA
ATTGAATCAAAACTGAATGGAAGTGACTTTAGTGAATATTTTCTCCTTAT
GGCTAGTGTTATATATTTCCATGAAAATGATACAGATTCGGCTCTTAGAT
GTTTGTTTCAATCGACTGCACTAGAATGGATACAGATTCGGCTCTTAGAT
GTTTGTTTCAATCGACTGCACTAGAATGTTCTGCACTCTCTGTACAAATA
TACATCAGTCTTGACAGATTGGACTTAGCAAATTCTGCACTCTCTGTACA
AATATACATCAGTCTTGACAGATTGGACTTAGCAAAAACTGAAATTGGGA
GGATGCAAAACTGAAATTGGGAGGATGCAACAAAATGATGAAGATGCAAC
TCTTACTCAATTAGCCATGGCATGGTTCAATCTGGCTGTGCAAAATGATG
AAGATGCAACTCTTACTCAATTAGCCATGGCATGGTTCAATCTGGCTGTG
GGTGGTGAGAAGTGTCAAGATGCTTATTACATTTTCCAAGAACTCATCGA
CAAATATTCCAGTACAATCTCCATGTTGAATGCACAAGCAACTTGTTACA
TGAGAATGGGAAAGTTTGAAGATGCAGACAGTAATTTACAGGAAGCTTTA
GATAGAGGTGGTGAGAAGTGTCAAGATGCTTATTACATTTTCCAAGAACT
CATCGACAAATATTCCAGTACAATCTCCATGTTGAATGCACAAGCAACTT
GTTACATGAGAATGGGAAAGTTTGAAGATGCAGACAGTAATTTACAGGAA
GCTTTAGATAGAGATAGTAACAACCCAGAAACACTTTGTAATATGGCAGT
TCTTGCGCAACATCTTGGTAAAGCACCAGAGGATAGTAACAACCCAGAAA
CACTTTGTAATATGGCAGTTCTTGCGCAACATCTTGGTAAAGCACCAGAG
GTTAGCAACCGATTCATTTCACAATTACGAGCTGGTCACGATCGCCATTG
CTTCACCAAAGACTACCTGAAAAAGGTTAGCAACCGATTCATTTCACAAT
TACGAGCTGGTCACGATCGCCATTGCTTCACCAAAGACTACCTGAAAAAG
GAAGCAGATTTTGATCGTATCGTTGAAAGTTACGCTGCATCGGCAAAAGC
TCATTAAGAAGCAGATTTTGATCGTATCGTTGAAAGTTACGCTGCATCGG
CAAAAGCTCATTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_038776XLOC_038776-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079_pilongenomesc0000079_pilon:403310..411028 -
Properties
Property NameValue
Aaloc847-903:58
Aaloc772-846:767
Aaloc703-771:1179
Aaloc547-702:4893
Aaloc487-546:5159
Aaloc466-486:5501
Aaloc412-462:6209
Aaloc361-408:6722
Aaloc265-360:7108
Aaloc163-261:7468
Aaloc97-162:7720