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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000048_pilon:608597..613515+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_038667 ID=XLOC_038667|Name=XLOC_038667|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4919bp|location=Sequence derived from alignment at sc0000048_pilon:608597..613515+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGACGATGTGATTATTTTTCAACAGGTCAAGCGCGTCTTTAACGAGGT
AAAGGCCATGTCAAAAAGCGATCTCTACGATGCCTTAAAATCCGGTCACA
CCAATCCCAAGATGTTAGCTTTACATTTCACTGCAATACAAGAAAAGGGC
CTAGTTTATTTAGACGATATCTACAACCTCGAAGTCTCAACACCGCTTAC
AGTTATCATTCACGCCATTTACCCCGGACTCTGTCTTTCGAAGAAGAAAC
TCGACGCACTCAACGCAGAAAGATTGCTCGTTGCTGAACATTGGTCAACC
GAATCCGACACCGCGGCATACGCCTGTGAAAATGCCCTTAAAAACCAACT
GCATACGTATGATGTCCTTCTTATCCGCGCGACCCAACACAAGGGGACTG
GGCGTGAGAAGTCGGATAGGAGAACAATTCGTCAATACGTCTGGCAGCAC
CTCCAGGACATGTTCTCCAAGGCTGTCGATAGAGGATGTGTCACCTATTC
CACACAGCAGCAGGCGAAGGGATTCTGCTGTAACGGAAAACCAGACGTCA
CCGGAGAATTACAAGAGAACGTCCCTGCTGTCCACCCCACTTTCAACCTA
TCCCTGTTCCTCAAGACTGGCACGTCCGCGATTACGAATTGTTTCAACTA
CGTCCTCAGAAGAAGAGTTCATGGTAAGGAGCAATTCAAGCGTCTCGCCG
TCATGTCCGTCAACCGCCAGAATGTCATCCGTGAGAGAGTTGGCTTCCCT
GACCGAGTTAAACTCGATTTCTTCAAGCCCATTTGAGACGAAACGTAAAC
GAGGTTCTGACGAATGGTTATCCAAGGAGAACTTACGAGAGGGATCAGAG
GGAGCTGTTCAATCAAAAAAAGCCCGTCCGACACCAGATCTTGGAACTCC
TGAAAGCGAAGTGCATCAGAAACAGTAAGCATTACGATGTTGAACTTTTA
ACTAATGaacatttacaatttttagaaGGTTGTATTATGCCGTCTGctct
ttaaaatgtaaaaagaattgCTTTTAATCAGAATTGTTATCGTCCAATTG
TACCTTATTTTGAGAGAACTGTGTATGGGTGTTTAGATGAGTATACATGT
AGACTCCATTAGATGAAAAGAATACCCAGCAACACAGCCATCGCACGCTT
TAAAGTCACATGGTatgtaattattgtttaaatGTATTTATTGAATATCT
TTCTTGACTTTTTAGATCAAAAAGTCGAGTGAGACTCCATTAGATGAAAA
GAATACCCGCCAGCAACACAGCCATCGCACGCATTAAAGTCACATGATat
gtaattattgtttaaatgtatttattgaatatctttcatgactttttaga
tcaaaagtcgACCGAGACTCCATTAGATGAAAAGAATACCCAGCAACACA
GCCATCGCACGCTTTAAAGTCACATGATatgtaattattgtttaaatGTA
TTTATTGAATATCAACGTAGTCCATCTGCGTGCGGATGATATGAACAATA
CCATGATGAGCAGCGCAATGGTATGATTCCTTTAAACAATTGAACTTTAA
TGGCCTTCACCATCATCCATGGTTGTTAATATCAACATCTGACtgagaaa
ttttgtttgtatcttttgaaaattcagaattgTAATGTACTAGATTCTTC
ACAGTAGGAGATTTATTTTCCAGTTTATTCATATAAAATAACTTataaaa
tagtttatttttattcagGGGTTGGCTTACTACACTATccattgcaattt
ttgaatattcttgAAAGTGACGTACTTCCGTGCTCGGACACGCGTGGGAA
TGCGTAAGATTTAGAGAATTTCGCAAcatttttatatttgatcagATTTG
ATGACAATTAGTAACTTTTGGACTTTTCTTGCTGAATACAGATTTAAACT
AGGTATCTCCTATAACTGTATCCTTCCTTTCgtgattattttctttaata
aaaCTAATGGAGTATCTTTCATGCGACTTTTTAGATCAAGTGTCGAGTGA
GACTCCATTAGATGAAAAGAATACCCAGCAACACAGCCATCGCACGCTTT
AAAGTCACATGGTATGTAATTATTATTTAAATGTATTTATTGAATATCTT
TCATGGAGGATGTGATTATTTTTCAACAGGTCAAGCGCGTCTTTAACGAG
GTAAAGGCCATGTCAAAAAGCGATTTCTACGATGCCTTTTTAAAATCCTG
TCACACCAATCCCAAGATGTTAGCTTTACATTTCACTGCAATACAAGAAA
AGGGACTTGTTTATTTAGACGATATCTACAACCCCGAAGTCTCAACACCG
CTTACAGTTATCATTCACGCTATTTACCCCGGACGCAGAAAGATTGCTCG
TTGCTGAACATTGGTCAACCGAATCCGACACCGCGGCATACGCCTGTGAA
AATGACCTTAAAAACCAACTGCATACGGATGATGTCCTTCTTATCCGCGC
GACCCAACACAAGGGGACTTGGGGTGAGAAGACAGATAGGAGAACCATTC
GTCAATACGTCTGGCAGCACCTCCAGGACATGTTCTCCAAGGCTGTCGAT
AGAGGATGTGTCACCTATTCCACACAGCAGCAGGCGAAGGGATTCTGCTG
TAACGGAAAACCAGACGTCACCGGAGAATTACAAGAGAACGTCCCTGCTG
TCCACCCCACTTTCAACCTATCCCTGTTCCTCAAGACTGGCACGTCCGCG
ATTACGAATTGTTTCAACTACGTCCTCAGAAGAAGAGTTCATGGTAAGGA
ACAATTCAAGCGTCTCGCCGTCATGTCCATCAACCGCCAGAATGTCATCC
GTGAGAGAGTGGGCTTGGCTTCCCTGACCGAGTTAAGCTCGATTTCTTCA
AGCCCATTGAGACGAAACGTAAACGAGGTTCTGACGAATGGTTATCCAAG
GAGAACTTACGAGAGGGATCAGAGGGAGCTGTTCAATCaaaaaaaGCCCG
TCCGACGCCAGATCTTGGAACTCCTGAAAGCGAAGTGCATCAGAAACAGT
AAGCATTACGATGTTGAACTTTTAACTAATGaacatttacaatttttaga
aGGTTGTATTATGCCGTCTGCTCTTTACAATGTAAAAAGAATTGCTTTTA
ATCAGAATTGTTATCGTCCAATTGTACCTTATTTTGAGAGAACTGTGTAT
GGGTGTTTAGATGAGTATACATGTAGACTCCATTAGATGAAAAGAATACC
CAGCAACACAGCCATCGCACGCTTTAAAGTCACATGATatgtaattattg
tttaaatgtatttattgaatatctttcatgactttttaGatcaaaagtcg
AGTGAGACTCCAttagatgaaaagaaaagaaaacccAGCAACCAGCCATC
GCACGCTTTAAAGTCACATGGTATGTAATTATTATTTAAATGTATTTATT
GAATATGTTTCATGactttttagatcaaaagtcgAGTGAGACTCAATTAG
ATGGAAAGAATACCCCAGCAACACTGCCATCACACGCTTTAAAGCCACAT
GGTATGTAATTATTATTTAAATGTATTTATTGAATATCTTTCATGacttt
ttagatcaaaagtcgAGTGAGACTCCATTAGATGAAAAGAATACCCCAGC
AACACAGCCATCACACGCTTTAAAGCCACATGGTatgtaattattgttta
aatgtatttattgaatatctttcatgactttttagatcaaaagtcgAGTG
AGACTCCATTAGATGAAAAGAATACCCAGCAACACAGCCATCGCACGCTT
TAAAGTCAATTGGTatgtaattattgtttaaatGTATTCATTGAATATCT
TTCTTGCTGAATACAGATTTAAACTAGGTATCTCCTATAATTGTATCCTT
CCTTTCgtgattattttctttaatgtAACTAATGGAGTATCTTTCATGCG
ACTTTTTAGATCAAATGTCGAGTGAGACTCCATTAGATGAAAAGAATACC
CAGCAACACAGCCATCGCACGCTTTAAAGTCACATGGTATGTAATTATTA
TTTAAATGTAtttattgaatatcttttatggACGATGTGATTATTTTTCA
ACAGGTCAAGCGCGTCTTTAACGAGGTAAAGGCCATGTCAAAAAGCGATC
TCTACATCGATCTCTTTACATTTCACTGCAATACAAGAAAAGGGACTTGT
TTATTTAGACGATATCTACAACCTCGAAGTCTCAACACCGCTTACAGTTA
TCATTCACGCCATTTACCCCGGACTCTGTCTTTCGAAGAAGAAACTCGAC
GCACTCAACGCAGAAAGATTCCTCGTTGCTGAACATTGGTCAACCGAATC
CGGCACCGCGGCATACGCCTGTGAAAATGCCCTTAAAAACCAACTGCATA
CGCATAATGTCCTTCTTATCCGCACAACCCAACACAAGGGGACTTGGCGT
GAGAAGACGGATAGGAGAACAATTCGTCAATACGTCTTGCAGCACCTCCA
GGACATGTTCTCCAAGGCTGTCGATAGAGGATGTGTCACCTATTCCACAC
AGCAGCAGGCGAAGGGATTCTGCTGTAACGGAAAACCAGACGTCACCGGA
GAATTACAAGAGAACGTCCCTGCTGTCCACCCCACTTTCAACCTATCCCT
GTTCCTCAAGACTGGCACGTCCGCGATTACGAATTGTTTCAACTACGTCC
TCAGAAGAAGAGTTCATGGTAAGGGGCAATTCAAGCGTCTCGCCGTCATG
TCCGTTAACCGCCAGAATGTCATCCGTGAGAGAGTTGGCTTCCCTGACCG
AGTTAAGCTCGATTTCTTCAAGCCCATTGAGACGAAACGTAAACGAGGTT
CTGACGAATGGTTATCCAAGGAGAACTTACGAGAGGGATCAGAGGGAGCT
GTTCAATCaaaaaaaGCCCGTCCGACGCCAGATCTTGGAACTCCTGAAAG
CGAAGTGCATCAGAAACAG Coding sequence (CDS) from alignment at sc0000048_pilon:608597..613515+ >XLOC_038667 ID=XLOC_038667|Name=XLOC_038667|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1848bp|location=Sequence derived from alignment at sc0000048_pilon:608597..613515+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGACGATGTGATTATTTTTCAACAGGTCAAGCGCGTCTTTAACGAGGT
AAAGGCCATGTCAAAAAGCGATCTCTACGATGCCTTAAAATCCGGTCACA
CCAATCCCAAGATGTTAGCTTTACATTTCACTGCAATACAAGAAAAGGGC
CTAGTTTATTTAGACGATATCTACAACCTCGAAGTCTCAACACCGCTTAC
AGATGGACGATGTGATTATTTTTCAACAGGTCAAGCGCGTCTTTAACGAG
GTAAAGGCCATGTCAAAAAGCGATCTCTACGATGCCTTAAAATCCGGTCA
CACCAATCCCAAGATGTTAGCTTTACATTTCACTGCAATACAAGAAAAGG
GCCTAGTTTATTTAGACGATATCTACAACCTCGAAGTCTCAACACCGCTT
ACAGTTATCATTCACGCCATTTACCCCGGACTCTGTCTTTCGAAGAAGAA
ACTCGACGCACTCAACGCAGAAAGATTCCTCGTTGCTGAACATTGGTCAA
CCGAATCCGGCACCGCGGCATACGCCTGTGAAAATGCCCTTAAAAACCAA
CTGCATACGCATAATGTCCTTCTTATCCGCACAACCCAACACAAGGGGAC
TTGGCGTGAGAAGACGGATAGGAGAACAATTCGTCAATACGTCTTGCAGC
ACCTCCAGGACATGTTCTCCAAGGCTGTCGATAGAGGATGTGTCACCTAT
TCCACACAGCAGCAGGCGAAGGGATTCTGCTGTAACGGAAAACCAGACGT
CACCGGAGAATTACAAGAGAACGTCCCTGCTGTCCACCCCACTTTCAACC
TATCCCTGTTCCTCAAGACTGGCACGTCCGCGATTACGAATTGTTTCAAC
TACGTCCTCAGAAGAAGAGTTCATGGTAAGGGGCAATTCAAGCGTCTCGC
CGTCATGTCCGTTAACCGCCAGAATGTCATCCGTGAGAGAGTTGGCTTCC
CTGACCGAGTTAAGCTCGATTTCTTCAAGCCCATTGAGACGAAACGTAAA
CGAGGTTCTGACGAATGGTTATCCAAGGAGAACTTACGAGAGGGATCAGA
GGGAGCTGTTCAATCaaaaaaaGCCCGTCCGACGCCAGATCTTGGAACTC
CTGAAAGCGAAGTGCATCAGAAACAGTTATCATTCACGCCATTTACCCCG
GACTCTGTCTTTCGAAGAAGAAACTCGACGCACTCAACGCAGAAAGATTC
CTCGTTGCTGAACATTGGTCAACCGAATCCGGCACCGCGGCATACGCCTG
TGAAAATGCCCTTAAAAACCAACTGCATACGCATAATGTCCTTCTTATCC
GCACAACCCAACACAAGGGGACTTGGCGTGAGAAGACGGATAGGAGAACA
ATTCGTCAATACGTCTTGCAGCACCTCCAGGACATGTTCTCCAAGGCTGT
CGATAGAGGATGTGTCACCTATTCCACACAGCAGCAGGCGAAGGGATTCT
GCTGTAACGGAAAACCAGACGTCACCGGAGAATTACAAGAGAACGTCCCT
GCTGTCCACCCCACTTTCAACCTATCCCTGTTCCTCAAGACTGGCACGTC
CGCGATTACGAATTGTTTCAACTACGTCCTCAGAAGAAGAGTTCATGGTA
AGGGGCAATTCAAGCGTCTCGCCGTCATGTCCGTTAACCGCCAGAATGTC
ATCCGTGAGAGAGTTGGCTTCCCTGACCGAGTTAAGCTCGATTTCTTCAA
GCCCATTGAGACGAAACGTAAACGAGGTTCTGACGAATGGTTATCCAAGG
AGAACTTACGAGAGGGATCAGAGGGAGCTGTTCAATCaaaaaaaGCCCGT
CCGACGCCAGATCTTGGAACTCCTGAAAGCGAAGTGCATCAGAAACAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000048_pilon | genome | sc0000048_pilon:608597..613515 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 205-924:4200 |
| Aaloc | 1-201:1 |
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