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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000115_pilon:467821..470729+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_038648 ID=XLOC_038648|Name=XLOC_038648|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2909bp|location=Sequence derived from alignment at sc0000115_pilon:467821..470729+ (Clytia hemisphaerica_ch_hm2_pilon)
AGTTCAAGACCAATAATGGGGATGCTACGTCGATTGCTCTTCATTTCGCT
ATTGATCTCCATTGTCCAATCACACAAACTTGCAAAAAGATCAACACCAT
CGTATCGAGTAGAAGGTTGTTTTCGGTCGGCACCTGGTGGtggaaaatca
caaaatatggGTCATTCCGCATCTAATGTAAGATGTCAAGATATTTGTCG
TGACCATGGCTACATCCTTGCTGCTACCAAAGGTACAACGTGTCATTGTC
GAAACATTTATCCTCAAGGTCGTAAAGTAGCTGATAGTCAATGTCGAACG
AGATGCAGATCTTGGTTATCGTGTAACAATGCACAAGAATGCTGTGGAGG
TTCACAGGCGTACACTGTCAGTGTGGTGGGAAATATTGATGTTGCAAAGC
AAGTAAGTTCTAAACTCAATAGTATGAAATAGGTTGTTTACTTTTATGGT
GACCTTTTCCGATTTTAACAAATACTAACTAATTCCACCCTACAAAACTC
GTGAGTTACAGTATCAACATAGCAGGgcgtctgaaaaataaaatgcttAC
TCACAAAAGTAGAAATTTTCACCAGATGGTATCCAAAGGttataaaaatc
aaagaatggacattttctaaaatattattGGATAACTGAAGTCCACATGC
AAATCGGCTTGGTGTCTTTTAAAGCGCTTTCTAAATTTCAGGTTTTGAGA
AGGATTGCCCATAAATGGCAAGTTAGCACTCATTATCGAAAACACATGAG
GAATTTTGTCAACAAACCACAGTTTAGACACGTAGAAGCTGATTGGTGGA
GGAGTTTTGATGTAAAAGGTTGGAGTAATTGTCCGGATGGAACCTACATG
ACTGGTGTTTGGCGTAATAACAATGATCAGGATAATGATGGCATCCACTT
GATCGAACTGGCTGAATGTAAAAGCGCTGCTGCCCATCTGTTTTCGGGTG
AGTTGTCttattttacacatttttttggGAGAACATCCGGAATTTTTGAA
ACcgtcggatattcttaactttttgggtttgaactctaaaaatgttccta
aaaCATGTTAAGTTTGTATTTTGGTGTGTTTTCCTAAAAAGAAGCCGGGT
TTTGAGACCTCAAAGCCATTGGATGTTCATAAACAAGTTATGAAAGGCGT
GAAAAACAATTGCCGTCTGCTTGATAATTTCATAACTTCATGCGAGAttt
ggagagttccgatttataATATAGATAATTCGGAAATGCCAACTTATAAC
GTATGATTATGATATTTCTTTTTAACTCCCCGTTAATTAATTGTCTCGCT
TGTCTTTTTCAGCTGGAAAGGGTGATCAAGACTGTTACAAACTCAACATC
TGGAAAACATGGGACAGTAGAAACTGGGCCACCTGCAAAGCTGGTTATTA
CATGTCGGGAATTTACAATACTGAAGGACATCGTTTGCATAATATCGAAG
AATTCCACTGCTGTCGACCAAAATCGCAACACAAAAGCTGGGGAAGTTGC
TACAACCACGATGCATGGGCCTCCTTGAATGATAAAGGTTGGACAAAATG
TAACAACGGCTATTATATGGTTGGTATGTATCGGAATGACTGCAATAATT
TGTGGTGTATTGAGGAATTCAAATGTTGTCAAATGGGAAGTTATAATCAA
GATTCGTACGTCGATAAACCGATCATCACCatcaaggtaaaaaaaaaatg
ctttatGTGATTGCTATGGGAACCCatgcttttttttctttacccTTTGA
ATTTTGGATCTTGAAAGTTTCTAAGTTAGGTATTGCAGTGTGTGCATGAC
AGGTTGATTAATAATTAAATGCCATCTTCAGacacaaactttcgcgagca
gaaatttCCTCACATTAATGAATTTgaggaaaacaaatttttcacaaGCA
CAAGACtttcgtgaatcgttggataaatatcatgaatttcaaaaaaaatt
gacttaaaaaggACATTTTCGTCCAGGCTAAAAAATATTGCTTAAGAATG
TGCTAAATGtttgttatttaaactttatcacaaattcgaatttttacgat
taattttaattttttaaagaaattttgaattgtcCGTCCTGTCACACACA
CGATGATTCTAAGAAGCCatctttttctttcctttctcaACCAGACTATG
GGAACAGATGGCCGACTTAAAGAATGCACCATGGATGCCATGGATAAAAC
TCCAGAAAGCAAGACCTATTCTTGTAAAGCTGTATCGTCAcgtcaaaaca
ttttgaaattagatGCTGTCGAGTTCAAAGTCGAAGATAAGACACAACCT
ACAACAGCAAAACCCGAACgcgtcaaaaacttcaaaccagTCATCTGTTC
TGCTTCTAACAACGCCTACACTTGcaccaaaacattaaaaacagcCATCG
AGACAACCACAAGTCTGGTGATTGGAACAGGTTTTGAGATGGGCGTTTCC
GTTAGTAACACAGTTGGAGTTTCAGTTGAAGCCTTTGGCGTCAGTGCTTC
ATCAGAGTTCTCAGTTCAAGTTTCTGCATCAACTTCTTTCAACGTCGAAA
GAACTAAATCGAAAACCATTACCGTTGAAGACGAAACAAAAGTTGATGTC
AAAGTCGCTGCCCACAAACAAATCATGATTGACCTCCTTCGCAAGAAAGT
GGATATCATCTATAAATGGAAAGGTATTTTCCGCCTTCTTGGTAAATACA
AGCTCTCTTGGAGTAATGGTGATCAAACTACACAGGATATCACTACAGTC
TTGTCTGGTACGAACCGAGACATGTATGCTTTTGGCACCTGGAATTACCC
TGGTACCGACGTCCTTCAAGTTTTGGTGACTGATCAATACGGTAACAAGA
AGACTGAATGTCAACACAAAACTGGATCTAAAAAAGACTGTTCCGTAGCA
GGACTCTGA Coding sequence (CDS) from alignment at sc0000115_pilon:467821..470729+ >XLOC_038648 ID=XLOC_038648|Name=XLOC_038648|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3594bp|location=Sequence derived from alignment at sc0000115_pilon:467821..470729+ (Clytia hemisphaerica_ch_hm2_pilon)
AGTTCAAGACCAATAATGGGGATGCTACGTCGATTGCTCTTCATTTCGCT
ATTGATCTCCATTGTCCAATCACACAAACTTGCAAAAAGATCAACACCAT
CGTATCGAGTAGAAGGTTGTTTTCGGTCGGCACCTGGTGGtggaaaatca
caaaatatggGTCATTCCGCATCTAATGTAAGATGTCAAGATATTTGTCG
TGACCATGGCTACATCCTTGCTGCTACCAAAGGTACAACGTGTCATTGTC
GAAACATTTATCCTCAAGGTCGTAAAGTAGCTGATAGTCAATGTCGAACG
AGATGCAGATCTTGGTTATCGTGTAACAATGCACAAGAATGCTGTGGAGG
TTCACAGGCGTACACTGTCAGTGTGGTGGGAAATATTGATGTTGCAAAGC
AAAGTTCAAGACCAATAATGGGGATGCTACGTCGATTGCTCTTCATTTCG
CTATTGATCTCCATTGTCCAATCACACAAACTTGCAAAAAGATCAACACC
ATCGTATCGAGTAGAAGGTTGTTTTCGGTCGGCACCTGGTGGtggaaaat
cacaaaatatggGTCATTCCGCATCTAATGTAAGATGTCAAGATATTTGT
CGTGACCATGGCTACATCCTTGCTGCTACCAAAGGTACAACGTGTCATTG
TCGAAACATTTATCCTCAAGGTCGTAAAGTAGCTGATAGTCAATGTCGAA
CGAGATGCAGATCTTGGTTATCGTGTAACAATGCACAAGAATGCTGTGGA
GGTTCACAGGCGTACACTGTCAGTGTGGTGGGAAATATTGATGTTGCAAA
GCAAGTTTTGAGAAGGATTGCCCATAAATGGCAAGTTAGCACTCATTATC
GAAAACACATGAGGAATTTTGTCAACAAACCACAGTTTAGACACGTAGAA
GCTGATTGGTGGAGGAGTTTTGATGTAAAAGGTTGGAGTAATTGTCCGGA
TGGAACCTACATGACTGGTGTTTGGCGTAATAACAATGATCAGGATAATG
ATGGCATCCACTTGATCGAACTGGCTGAATGTAAAAGCGCTGCTGCCCAT
CTGTTTTCGGGTTTTGAGAAGGATTGCCCATAAATGGCAAGTTAGCACTC
ATTATCGAAAACACATGAGGAATTTTGTCAACAAACCACAGTTTAGACAC
GTAGAAGCTGATTGGTGGAGGAGTTTTGATGTAAAAGGTTGGAGTAATTG
TCCGGATGGAACCTACATGACTGGTGTTTGGCGTAATAACAATGATCAGG
ATAATGATGGCATCCACTTGATCGAACTGGCTGAATGTAAAAGCGCTGCT
GCCCATCTGTTTTCGGCTGGAAAGGGTGATCAAGACTGTTACAAACTCAA
CATCTGGAAAACATGGGACAGTAGAAACTGGGCCACCTGCAAAGCTGGTT
ATTACATGTCGGGAATTTACAATACTGAAGGACATCGTTTGCATAATATC
GAAGAATTCCACTGCTGTCGACCAAAATCGCAACACAAAAGCTGGGGAAG
TTGCTACAACCACGATGCATGGGCCTCCTTGAATGATAAAGGTTGGACAA
AATGTAACAACGGCTATTATATGGTTGGTATGTATCGGAATGACTGCAAT
AATTTGTGGTGTATTGAGGAATTCAAATGTTGTCAAATGGGAAGTTATAA
TCAAGATTCGTACGTCGATAAACCGATCATCACCatcaagCTGGAAAGGG
TGATCAAGACTGTTACAAACTCAACATCTGGAAAACATGGGACAGTAGAA
ACTGGGCCACCTGCAAAGCTGGTTATTACATGTCGGGAATTTACAATACT
GAAGGACATCGTTTGCATAATATCGAAGAATTCCACTGCTGTCGACCAAA
ATCGCAACACAAAAGCTGGGGAAGTTGCTACAACCACGATGCATGGGCCT
CCTTGAATGATAAAGGTTGGACAAAATGTAACAACGGCTATTATATGGTT
GGTATGTATCGGAATGACTGCAATAATTTGTGGTGTATTGAGGAATTCAA
ATGTTGTCAAATGGGAAGTTATAATCAAGATTCGTACGTCGATAAACCGA
TCATCACCatcaagACTATGGGAACAGATGGCCGACTTAAAGAATGCACC
ATGGATGCCATGGATAAAACTCCAGAAAGCAAGACCTATTCTTGTAAAGC
TGTATCGTCAcgtcaaaacattttgaaattagatGCTGTCGAGTTCAAAG
TCGAAGATAAGACACAACCTACAACAGCAAAACCCGAACgcgtcaaaaac
ttcaaaccagTCATCTGTTCTGCTTCTAACAACGCCTACACTTGcaccaa
aacattaaaaacagcCATCGAGACAACCACAAGTCTGGTGATTGGAACAG
GTTTTGAGATGGGCGTTTCCGTTAGTAACACAGTTGGAGTTTCAGTTGAA
GCCTTTGGCGTCAGTGCTTCATCAGAGTTCTCAGTTCAAGTTTCTGCATC
AACTTCTTTCAACGTCGAAAGAACTAAATCGAAAACCATTACCGTTGAAG
ACGAAACAAAAGTTGATGTCAAAGTCGCTGCCCACAAACAAATCATGATT
GACCTCCTTCGCAAGAAAGTGGATATCATCTATAAATGGAAAGGTATTTT
CCGCCTTCTTGGTAAATACAAGCTCTCTTGGAGTAATGGTGATCAAACTA
CACAGGATATCACTACAGTCTTGTCTGGTACGAACCGAGACATGTATGCT
TTTGGCACCTGGAATTACCCTGGTACCGACGTCCTTCAAGTTTTGGTGAC
TGATCAATACGGTAACAAGAAGACTGAATGTCAACACAAAACTGGATCTA
AAAAAGACTGTTCCGTAGCAGGACTCTGAACTATGGGAACAGATGGCCGA
CTTAAAGAATGCACCATGGATGCCATGGATAAAACTCCAGAAAGCAAGAC
CTATTCTTGTAAAGCTGTATCGTCAcgtcaaaacattttgaaattagatG
CTGTCGAGTTCAAAGTCGAAGATAAGACACAACCTACAACAGCAAAACCC
GAACgcgtcaaaaacttcaaaccagTCATCTGTTCTGCTTCTAACAACGC
CTACACTTGcaccaaaacattaaaaacagcCATCGAGACAACCACAAGTC
TGGTGATTGGAACAGGTTTTGAGATGGGCGTTTCCGTTAGTAACACAGTT
GGAGTTTCAGTTGAAGCCTTTGGCGTCAGTGCTTCATCAGAGTTCTCAGT
TCAAGTTTCTGCATCAACTTCTTTCAACGTCGAAAGAACTAAATCGAAAA
CCATTACCGTTGAAGACGAAACAAAAGTTGATGTCAAAGTCGCTGCCCAC
AAACAAATCATGATTGACCTCCTTCGCAAGAAAGTGGATATCATCTATAA
ATGGAAAGGTATTTTCCGCCTTCTTGGTAAATACAAGCTCTCTTGGAGTA
ATGGTGATCAAACTACACAGGATATCACTACAGTCTTGTCTGGTACGAAC
CGAGACATGTATGCTTTTGGCACCTGGAATTACCCTGGTACCGACGTCCT
TCAAGTTTTGGTGACTGATCAATACGGTAACAAGAAGACTGAATGTCAAC
ACAAAACTGGATCTAAAAAAGACTGTTCCGTAGCAGGACTCTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000115_pilon | genome | sc0000115_pilon:467821..470729 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1051-1815:2145 |
| Aaloc | 679-1050:1315 |
| Aaloc | 421-675:692 |
| Aaloc | 19-420:1 |
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