XLOC_038558 (mRNA) -

Overview


Name	XLOC_038558
Unique Name	XLOC_038558
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000024_pilon:427171..432917-
coding sequence from alignment at sc0000024_pilon:427171..432917-

mRNA from alignment at sc0000024_pilon:427171..432917-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_038558 ID=XLOC_038558|Name=XLOC_038558|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5747bp|location=Sequence derived from alignment at sc0000024_pilon:427171..432917- (Clytia hemisphaerica_ch_hm2_pilon)
TACCATGGTGATGACCAGATCTGTCTGGTGATCGATGAACCGTTTAAAGA
TGTTGGTGATTCTCATTTGATTGATGCTCGTGGATGGAGATATTTCAAGA
AAGAAATCGTCAGAAAGGTAAATACGGGGGAAATCCTACTTGTTCGACAG
TATACTTGTTCGAAGGTACATTTGTTCGACAAATTTATGAATTTGTCGAA
CAAGTGAGTTGTCGAACAACTGGGTTGTCGAACATGTGACATATGTCAAA
CTCGAACCCAGTTCCTTGTCGGTTTTTTAAGATTCTAATAGCACTCGCGA
CGAAAAGAAAGACTACTTAGTTAGTGAGGGATGTACTCAGACATATTGCC
CGAGGTCAAGTAACGATCGCGACAAAAAAAAAACCGGTTTAAACAGTTTT
ATTAGAACTTCTTAATTTGGGTTTAGCCTGGCCCTCAAATAGAACAAATC
TTCTCAGATTTAAATTTAAAGGAGGTAAAGGAATTACTGTGATTACGAAA
TTTTGAGCAAATTTGGTTAATCTTTTCCATTCTCAAAATTTGGTCATGCT
TTTACGATGCTCCTCATTTTTTCCCAAATTTCAAATTTTCAAGGTTCCAT
TATCTTAAAGCTTTGTGAAATTCTTTGATTTACTATTCATTTCAATGGCT
TCCAAGGGACAGTGCTATCAAATAAATAATCGAAATGCTTAAAAGTTAGA
GCCTATTAGCTGAGGGACTCCTGGTTAATATCAGTCATTTCCTTAAATCC
TCTAAGTTGTATTAGTCCCTAAAGTACAGTGTGTTCCGCAAAAAAGTATA
CTCAAAAAGTAAAATCGAATTATGAAAAAACTTTAAGCTTAGGCGAAACA
AAAAAAAATTCTTGTTTCCGGAAACCAGCCGGGTGAAAAAAAATTTTTTT
CTGACCCGGCCGCAAACTTCGTTCGTTAGTAGTCCGTACTTGTTGTAATT
TAGGGCATAATTTATGCTGTGTTTATACATAAAAGTTATTCTTAAACTCT
ATTTCAATGAGCCATAAATTATCAAAAATAGCAAAAAAAAATTATTTTCC
GGCCGGCCGCATGATAACTTTTTTCCTTCACCCGCATTCCGGAAACAAAA
CATTTTTTATCATTCGCCTTAATCAACTTATTTTTAAATGAGCTCAAGGC
ACATATATTCAGCGTTCTACGGTGAAAATTTCATTGTGAAAAAAGTCTTA
GTTTTAGAGATATGAAGCTTCAAGCACACTAAGTCGGAGATTAAATAAGT
CGAGATGGAAAATTTTCAAAGCAAAAAAGCTAATTTACTTTTGATTGACA
GCTCTCTTTTACGTCATTTTGATGAAATATGCCATTTTAATGGTCAAACC
TATGCACCTTCCAAGTCAAATTTCTCGTCAATGAAAAGCTGGTTGAATAT
AAATCTTTCAGCAATGGAAAGAAGAATAATTTTTCTTTCTGCTGTATACA
AAATTAACTTTCTTGGACATTTCTACCTTTTCCAAATTAAGGTTAGTTAT
GAGTTAGCTTCTTTTTTTTAAATATCTTACTTCATCTTCAATGTTGAATA
GTTGCACCCTTGTGTACTTAAGACTCGATATATCTTGAACTAAAAAACTT
TCTGAATTAGATTTTTAAGCACATGGAGCTGAGTAGCTATACTGAAAATT
AAAGTTATTGGTTTAGTCATTTTTTTCACAGAATTATCTTACTTTTTCAG
TATACTTTTTTGCGGAACACACTGTATTTGTTTTTTACTCATTCACAGAA
ACAATCAAACCAAGTGCAAACAAACTTTTCGATTTCCGAAGGTAAGTTTT
GCCTGAAATTTTGAATTTCCGCCGAATTTGATTTATTCTATAGATTTTCA
AGTTTGTTCTAATTCAGTTTTTTTTGCCTATTTAATAAACGATTTTTGGC
CAAAAATATCTTGCGAACGCCAAAATAAATTCCTTCTTAAAACTTTTTCG
GTCATCCGCTAAATTAAATTCCCGCCAAATTTTCTTTCTTTAAAGTATTA
AGTCTGTAAATTACAAACTTTTCCAGTTTTTATTAAAAAATTTGAAAAAT
CCTTTGGAAAAAGAAGAAAAGGTGTCCGAAATAAGGCGAAACAGCGAAAT
GCGATTTTTTTTGGATTTTTTTTTTTTTCGACCACGAAAATAAGATCCTT
AAATTATGTTACCTTAAAGTAATTTTATATAAATGTTTTTTTTATAAGCA
AGTGTCTGCCCCTATATCAGGCTCGCATTATGCTTAGTATTCTATTGTTT
TTAAACAATAGAGCCATTGTTTAGGTACCAAAAACTGAGCCTGCATATGT
TTATAAACGTTTTGCTTATAGAATAAAAAACATGTATCTCCAAATTGAAA
AATAATTTAATTTTTCATAGAATTTCAACCTAAAAGGAACAACTTGGTCA
ATACCATACCCCTTCAGACGAACCAATGGGCTCTCTCATTCAAATTCATT
ATATATGACAAGCCTCCTGCAAGCGACCAACAAAGTGGAATTTTAACATT
TGCCACAACCAATGCGGACGGACTGATTCTTCAAAAGTTATTTGAAATTC
GTGATAGTAAAAATTCTATGAGGATTTTTATTGTACAGCACAACTCAGAT
ATTAAGGTATAACATTTGTTTTCTTTTTTTGCCACGGAAGGTTGTCTCAA
TCTTTAGTGAGTTAAACCATACAGTGTGTCCCATTGAGTTTCACGCCCGA
AGGGCTAGACGCGAGACTCCTGGATGGGAGATGAAACCACTTATTTCCCA
TCCAGAACACATGCGCGTAGTTTTTACACAAACGCCGGATTGAAACTAAA
ATATATCGCTGGATTTTAAAAAATGTAGTCCTTTAAAACAAAGAAACCGC
TTGATAAAATCCGTCGTCATGATTACGGACCATTTTTTATATAGAGATAA
ATCCTCATAATTTATTCCAAATTTTACACTTAATTTGACTTGTACACTTA
ATATTGCAATCTCTAAAAAAATTTCAATCATTTTTTTCAAATATTTATTG
ATTGAACAGAGAATTGTAATCTTGTTTCAGTTATTCTAAGCCCAATTTCG
ATAATGCGTTTTGAGGATTATACCTTTTATAAAAATTTGGCTGTTTTTTT
TTTTTTTTGGGACACACTGGTGCTCTGATGCCATGTCCTGGCAAATAATA
TCAAAGCTCTTGGCATTTATTAGTGTTTTGTGACATCGAATCAGGAAAAG
AATTCACTATCAAGAAATTGCGTTGATAATAAATCGTCACAACATTACTT
CGAAAACGATGCACGATTTGACGCATTTATAAAAATGGCCGAATTTTTTT
TTCAGCTGAAAATGCTGGAAATATGCCGGAAATCGCCGTTTTTCTGAATT
TTCATTGGACTCTTTCTTTACAATTGGTTGTTTTTTCATTCAAAAACATT
ATTAATAGCAATGACCCCCATCAAGCATGTTTAGATTTTCAATAAAATTG
ATTTTGGAAGCCGGAACTATTTAAAAATCACCGGAACAACTTATTTTCGC
CGGAAAGATAGTATTTCTTGAATTTCTCGAGCTGTACTTTATATTTTGTT
ATGAAATTTTGCACACTGAGGCAAAATGACAATACCTAAAATGTAAAATG
TATTTTTTTCCGGCCGAAAATACCGGAAATATGCCGGAAAAACCGTTTTT
TTGAGATTTTCTCGAATTTTAATCCCTAGTTTTTTCTGATTTTTGCAGAA
AGATGCGTATTCGCAATGCTCAAAACATGACCGAGTTCGATTTAAAAGAA
ATTTTTTTTCCAGCCAAAAATGCCGCATTGGATTTTTTCGTTTTATGCCT
TTGTTTTTTTTTTCAAACAAAAACATAATTTATAATGTCCACGATTAAGC
ATGGTTCAATTTTCAATGAAACTGATTTTGGTACAGGAACTTTCTAAAAA
TCGCCAGACCAGCCGAGAATCGCCGGATTTCTTGAATTTCTCGAGTTGTT
CTTGTATTATTCTGCATTTTTATACTATTGTTGTCATTTTTCAATTGTCT
TATCTTCAGGTAGGTCCATTCAGCATGTAGCTTGTTATTTTTATTCCCAT
AACGAGGTCCTAATAGGGATGAAATTTTTTTTACCGATTTCAAAAAAAAC
GCAATGGAGATGGTTATCGAGTGTAATTTTTACAATTGAATTTCAAATGG
GGATGAAATATAAACCAATAGTAGAAATTGCAGGGTATTTTTTCCCTGAG
GGTACTTCATTTCCAAAGGACGGTATTTGCCGCCAGTGCATTTACCGAAC
ACTTCTGACCCTTACAATGCAGTTTGTTTTCAAATCTTATTTTTCTGAAG
CCACCTGAAAATGAGCCTGAGATATCGACACAATGTGCAAAACAAATCAA
AATAGGTGTGAGTCAAAACAACAAACATACATCAGATTGCAGTCTTTAAA
CACGCCTTACAGTGTATCCAGCTAAAAGACCCTTGAAGTACACCCTCAAA
GTGCATTTCGGGGGTCTCGAAAATCCTACCCTTAAAAGCGGCACATGCTG
TGGGCTGGACCATATGAGTGCCCCCCCCTCCCACAGATTTCTTCCACTGG
GGATGCGAAATTTTCGCCAGATTTTCGACTTTGGCGGGGATCACATGTTT
CTATATTTCCTATGAAATATTTTATTTCCATATTATTTCGTTTTCATTAA
AGGCTTTATTTCCAATCGATTACGAGTTTAACAAATGGTATCACCTTTCA
TTGGAACAAATCTACATTGCCAATGACAATCACTACGTTTTGTCAGTCAT
GTTTAATCATCGTCAAATACTCCCAAAAAATGGAATTTTCATTAAAAACC
CTAAAAAATTTAACAATGTGAAATGTTTTGCTGGGCCACAAGATTTGCTA
GCATTGAATGGACGAGTGAGTGGTTTGGAATACAAACAGACTGCTTCAGA
TAAAAGTAAGATAGTTTATAGCGTTTAGACATTATGAAAAACTCACTATG
GTCAAAGCCCTTAAACATTAACGTGTAACGGCGCTCCATCATCAAAAGTG
AAACCTAAAGTGGTGTTTTCGATACCCTTGTCGCAAAAAATTTTCCTTCT
ATTTTCGTCATCAGTCCCTGCCCGCGCTGCTTAGGGTTGATAGGTTTATT
TTATAAGAATTTTTTCCAAATTCTGAGGAAAATTAAATTATAGACTTCAA
AATTCTTCAAGTCTTCGGATGTTCTTAACTTGTTGAGTTTTAAGCCTAAA
TATTTTACTAAAATGTTCTTATTTTAGTGAGTACTTTTTCTATTTTCTCA
TAGGCTTCAAAACAAAATATTCGTTTCTGGTTGACATCATTCCAACATGG
CCTGGAACAAATTGGGAGATAAGCTTCAAAATCAGAGTGCATTCAATGAA
AAGGGGTTCTTTTGAACATCCAATAAATGATTACCAAAATGTTTTTCAAC
TTGGGATCGGTGAAAATCATGGAAAGGATGGTACACGGATCGCATCTCTT
TTCATTCAAAAGCCATCCCGGAGATTTGTCTTCTATGTAGATCGGTTAGT
GAAAGCATGGTATGGGATTTCATCCGCGTCATCTTCTTACATCCAAGCTT
TCGAATTTGACCAAGAATACAATATCAAAGTCAATAAGTTTGGTGTTCAC
GTGCAAATTTTTATTGACAGTGATCGCCCGAAAGCTAACTTTCAATTTTA
TGCTAACAGAGATTCCAACAATGTTCAATTACATTTCAGTAACCCTTGGT
ATGATAACGCAGATGCGACAATAACAAACTTGAAATATAATTATTGA

Coding sequence (CDS) from alignment at sc0000024_pilon:427171..432917-

>XLOC_038558 ID=XLOC_038558|Name=XLOC_038558|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2286bp|location=Sequence derived from alignment at sc0000024_pilon:427171..432917- (Clytia hemisphaerica_ch_hm2_pilon)
TACCATGGTGATGACCAGATCTGTCTGGTGATCGATGAACCGTTTAAAGA
TGTTGGTGATTCTCATTTGATTGATGCTCGTGGATGGAGATATTTCAAGA
AAGAAATCGTCAGAAAGTACCATGGTGATGACCAGATCTGTCTGGTGATC
GATGAACCGTTTAAAGATGTTGGTGATTCTCATTTGATTGATGCTCGTGG
ATGGAGATATTTCAAGAAAGAAATCGTCAGAAAGAAACAATCAAACCAAG
TGCAAACAAACTTTTCGATTTCCGAAGAAACAATCAAACCAAGTGCAAAC
AAACTTTTCGATTTCCGAAGAATTTCAACCTAAAAGGAACAACTTGGTCA
ATACCATACCCCTTCAGACGAACCAATGGGCTCTCTCATTCAAATTCATT
ATATATGACAAGCCTCCTGCAAGCGACCAACAAAGTGGAATTTTAACATT
TGCCACAACCAATGCGGACGGACTGATTCTTCAAAAGTTATTTGAAATTC
GTGATAGTAAAAATTCTATGAGGATTTTTATTGTACAGCACAACTCAGAT
ATTAAGAATTTCAACCTAAAAGGAACAACTTGGTCAATACCATACCCCTT
CAGACGAACCAATGGGCTCTCTCATTCAAATTCATTATATATGACAAGCC
TCCTGCAAGCGACCAACAAAGTGGAATTTTAACATTTGCCACAACCAATG
CGGACGGACTGATTCTTCAAAAGTTATTTGAAATTCGTGATAGTAAAAAT
TCTATGAGGATTTTTATTGTACAGCACAACTCAGATATTAAGGCTTTATT
TCCAATCGATTACGAGTTTAACAAATGGTATCACCTTTCATTGGAACAAA
TCTACATTGCCAATGACAATCACTACGTTTTGTCAGTCATGTTTAATCAT
CGTCAAATACTCCCAAAAAATGGAATTTTCATTAAAAACCCTAAAAAATT
TAACAATGTGAAATGTTTTGCTGGGCCACAAGATTTGCTAGCATTGAATG
GACGAGTGAGTGGTTTGGAATACAAACAGACTGCTTCAGATAAAAGCTTT
ATTTCCAATCGATTACGAGTTTAACAAATGGTATCACCTTTCATTGGAAC
AAATCTACATTGCCAATGACAATCACTACGTTTTGTCAGTCATGTTTAAT
CATCGTCAAATACTCCCAAAAAATGGAATTTTCATTAAAAACCCTAAAAA
ATTTAACAATGTGAAATGTTTTGCTGGGCCACAAGATTTGCTAGCATTGA
ATGGACGAGTGAGTGGTTTGGAATACAAACAGACTGCTTCAGATAAAAGC
TTCAAAACAAAATATTCGTTTCTGGTTGACATCATTCCAACATGGCCTGG
AACAAATTGGGAGATAAGCTTCAAAATCAGAGTGCATTCAATGAAAAGGG
GTTCTTTTGAACATCCAATAAATGATTACCAAAATGTTTTTCAACTTGGG
ATCGGTGAAAATCATGGAAAGGATGGTACACGGATCGCATCTCTTTTCAT
TCAAAAGCCATCCCGGAGATTTGTCTTCTATGTAGATCGGTTAGTGAAAG
CATGGTATGGGATTTCATCCGCGTCATCTTCTTACATCCAAGCTTTCGAA
TTTGACCAAGAATACAATATCAAAGTCAATAAGTTTGGTGTTCACGTGCA
AATTTTTATTGACAGTGATCGCCCGAAAGCTAACTTTCAATTTTATGCTA
ACAGAGATTCCAACAATGTTCAATTACATTTCAGTAACCCTTGGTATGAT
AACGCAGATGCGACAATAACAAACTTGAAATATAATTATTGAGCTTCAAA
ACAAAATATTCGTTTCTGGTTGACATCATTCCAACATGGCCTGGAACAAA
TTGGGAGATAAGCTTCAAAATCAGAGTGCATTCAATGAAAAGGGGTTCTT
TTGAACATCCAATAAATGATTACCAAAATGTTTTTCAACTTGGGATCGGT
GAAAATCATGGAAAGGATGGTACACGGATCGCATCTCTTTTCATTCAAAA
GCCATCCCGGAGATTTGTCTTCTATGTAGATCGGTTAGTGAAAGCATGGT
ATGGGATTTCATCCGCGTCATCTTCTTACATCCAAGCTTTCGAATTTGAC
CAAGAATACAATATCAAAGTCAATAAGTTTGGTGTTCACGTGCAAATTTT
TATTGACAGTGATCGCCCGAAAGCTAACTTTCAATTTTATGCTAACAGAG
ATTCCAACAATGTTCAATTACATTTCAGTAACCCTTGGTATGATAACGCA
GATGCGACAATAACAAACTTGAAATATAATTATTGA

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_038558	XLOC_038558-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000024_pilon	genome	sc0000024_pilon:427171..432917 -

Properties


Property Name	Value
Aaloc	652-1143:493
Aaloc	397-648:1096
Aaloc	163-396:3376
Aaloc	118-159:4000
Aaloc	1-117:5748

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XLOC_038558 (mRNA) -