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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000091_pilon:611624..617241+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_038483 ID=XLOC_038483|Name=XLOC_038483|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5618bp|location=Sequence derived from alignment at sc0000091_pilon:611624..617241+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGATCTCCCATGCAGGCACATCTTTCTCTCGAGATCATTGTCAGGGTG
TGTGCCTCTTTTCGATCCCGTTCTTTGCGCCGTTCGATGGTCGAAAACTT
ATTATCGTCAAAGCCAACGGCTGTTTACACAAACAATCAATAAATTTGAC
AAGTTAACGACCACTTCGTCTTCATTCCGCCCTCTAAAAGCCCTTAACTT
TAACGAAAGATATAGAAAGGCAGACGctgtatgcaaaaatatttcGATGT
TGGCTTCAGAGCCTGGAGGCACAGAATTTGTCGAGCGAATGACCCTTCTT
AGAACACTTGAAGACATGTGGCGAAATGGTCAAGAGGTTCATTTACTTTC
GCTACCATTGAAATCAACGGAGAACGAAAATCCTTTTTCATCTTTCTCTC
AAGATCATTGTCAGGGTGCGTGCCTCATTTTTATTCTGTTCTTTTGCGCC
GTTCACTGGTTGAAGACTTATTTCCATCAAAGTCAACGGCtgtttacttt
ttctaaattttatgatttgaaaatatcCCCAGTGCGATTATCTTTTCTAC
AAACACACAATCACAGATTTATTTGTGCTTTAAAAGTTTTACTGACATCT
CGTTTGATATGGACTAATTTGATAGAGCTTAAGATTGTATTGATTACACC
ATTATGTGTTAAGGGGTAATGTTAatacatttaaaacaaaattttctatg
AATGTTTAGGTCACAAAGACAATACCAGTGACAAAACTTTGCCTAAAGTC
CCGAAGATTCAACCCGGGGTAAGTCATAATCTATCGtcaaaatgaatttt
ctttaaaggAGTAAACCGATGCAATTTATATTGAGAGTTGTTTATTATTA
ATTGAAGAACATTCTCCAGATACAAAGATGATGGTGACAGTAAAGCCAAA
GCCTGATGTTTCTCTGAATATTATTAAATGCTGCACGCAAACTGACCCTC
GACTTTCTTTTTCAGAACCCAAATGTTACTGGCGTCATCAACAATTCGCC
TTTGAAATCAACGGAGAACGAAAATCCTTTTTCGTCTATCTCTTCAAATC
ATTGTCAGGGTGCGTGCCTCTCTTTTTTATTCTGTTCTTTGCGCCGTTCG
CTGGTCGAAGACTTATTTCTATCAAAGTCCACGGCTGTTTactatttcta
aattttatgatttgaaaatatcCTCAGTgcgattatcttttcaacaaaca
cacaatcacatattttaattcgtactttttaaagttttactgACATCTCG
TTTGATATGGTCTAATTTGATAGAACTTGTGATTGTATTAATTACACCAT
TATGTGTCAAGGGGTAAAGTTAatacatttaaaacaaaattttctatgAA
TGTTCAGGTCACATAGACAATACCAGTGACAAAGATTCGCCCAAAGTCAC
AAAGATTCAGCCTGAGGTAAATCATAACCTACCGGCATCGGCAAATGAAG
TTTCTCTAAAAGAGTCTTTTCATAACCAAAGCGACAAGCATATCGACATT
CAAGATTTTGATGTCAGTAATGTTAAATTACCACCAAGGAAAAAGCCGAG
AGGAAGACCAAAAGGACACAATTTAACAGTCATCGGAAGACAGAAGAAAC
GGAAATTGAATAATGGTATTTTGcatgttgtttttttagctagtttttac
cactatattactttttctaaattttattgtttaaaaatatccTGATCgcg
attatcttttcaacaaacacaCAATCACAGATTTAAttcgagttttttga
aattttactgacagctaatttgaaatagactaaTCTGATGGAACTTAAGG
TTGTATTATTACACCATTGTTTTAAGGGGTAAAGATGAaacacttttaat
ttttttttctatgaatGTTCAGGTCGCAAAGATAATACGAATAACAAAGC
TTTGCCCAAAGTCCCGAAGATTCAACCCGAGGTAAGTCATAATCTATCca
caaaatgaattttctttaaaagagtAAACCGATGCAATTTATATTGAGAG
TTGTTTATGTTAAATTGAAGAACATTCTCCAGATACAAAGCTGATGGTGG
CAATAAAGCCAAAGCCTGATGTTTCTCTGAATATTATTAAATGCTGCATA
AACTGACCCTCGACTTTCTTTTTCAGAACCCAAATGTTACTGGCGTCATC
AACAATTCGCCTTTGAAATCAACGGAGAACGAAAATCCTGTTTCGTCTTT
CTCTCAAGATCATTGTCAGGGTGCGTGCATGCCTCTTTTTTATTCTGTTC
TTTTGCGCCCTTTACTGGTCGAAGACTTATTTCCATCAAAGTCAACGGCt
gtttactttttctaaattatatgatttgaaaatatctCCAGTgcgattat
cttttcaacaaacacaCAAATAACAGGTTTTAAGTTGTGCTTTTTAAAGT
TTAACTGGCATCTCTTTTGAAATGGACTAATTTGATAGAGCTTAAGATTG
TATTAATTACACCATTATGTGTTAAGGGGTAATGTTAatacatttaaaac
aaaattttctatgAATGTTCAGGTCACATAGACAATACCAGTGACAAAAA
TTTGCCCAAAGTCACGAAGATTCAACCCGAGGTAAGTCATAATCTATCGa
caaaatgaattttctttaaaggAGTAAACCGATGCAATTTATATTGAGAG
TTGTTTATTCTAAATTGAAGAACATTCTCCAGATACAAAGCTGATGGTGA
CAGTAAAGCCAAAGCCTGATGTTTCTCTGAATATCATTAAATGCTGCATA
AACTGACCCTCGACTTTCTTTTTCAGAACCCAAATGTTGCAGATGTCACC
AACAATCATCCTGACAGATTGGTGGATCATCTATCGTAAATTTATCCTTC
TTTCTCGGACTGAACGTTTCCAAATGttttttctatcaaatatattccag
atcttttttatcaaatttctgtctcattttatcgtttttttCTATTGCGA
GGCATTACTAAAAACGCATTTTCAGATATGGATTAAGATATAGATTTTGC
TTTTTCCAAGGCTCTGGTCATTGAGATTGCTCATTGGTCATTTGAACTCT
TTTTAACTTGTATAATATAagtttgccaatttttttttgctttattttca
gGTTTATTTGTGACCCCAGTCAACGAGCGGTAATCGAGGTTCCGGGTGAT
GGTCATTGCTTGCTATACGCTTGGGAAATATGTCTCAATTTTTCTGAGAA
CTCTTCCTTGAAGCCTTCCTATGTTGCATTAAGTTCAATGGTTATGCAGC
AATATTTATTAAGGAAAAAAGAATATAAGAAATTTCTGTGTGATAACGAG
TTGAACGTCGATATGGATAATGAGATAAGGAAATACCTGAATGAAAAAAG
TTACGGCCGTCAGATTGGCGATGAGCCGATTTTTGACTCTCTAACAAATG
CCACAAATGTCAAAGTTTTTACATGGGAAAGTGCAGAAAATGGATCCTTG
ATACAGATTGGCCACCGCGTTCCTTCAGACAACAACTGGTCTAATGGTAC
GATCCACCTTCACAAAATGGGTCAGCATTACGAGCCAATCGTtgccaaaa
agtttcaaggtttGTTGGGTagactattttctttttataagcaacccaTT
GAGCTTAGGGCTGGAATTATTGCTAAgcatttttcgaaatccaggGCTAA
AGTTGCTTATAAGGTCgcttaaaaaatttctaattttagaAGGACAGTAA
AGGACTTTTTTGTatcaaagatattttttatttgctgTAAAAAAGGTTGC
TATGGGGATTTCAGGGCTTTGTCGACAGAGGTCAAGAATTTACCTCTGAA
ACTCAGTGTAGGATCTCTAGGGGGCctttaaccaatcaaatcattttgGT
ATGTTTCTATATATAGAAATGGCAAAGTCCTTATCACGTTCACATGGAAT
TTCAATGCAAGAGACTCAGCGCATGTCAGAAGCCTGTAAGATGAAAATTA
GATTCTACGAATCGCCTTTTTCGTTCAAATTTCTCATTAGTGTGGAAATA
TGATTGTACAATGGAAAACGATTTCAACCATTTCGcccccccccATATGT
TAAATTCCGCTCAGAAACTATATGGACCAATTCCTGCCACCATGTGGAAA
CCAAGACATCCTAGTTACACTAATTTCTTTGAGCCACATTTTGGTAGCCG
GAGCTAGTGCAAAAGACTTTAACTTTACATTATTATATCATAGATATCCT
CAAAATGGTCGATAATGAAATTCCAAGCACCTCTGGGCATTGTAAGTTTG
TTGCTTAAAATTATTAGTATATCAACCAGTTTAAAGTTTCTCTTTTCATC
ACTTCGGAGTGAAGTGAACTTAATGCTTAATTCTACCTTTTTTAGGTTCT
ATTGAAGGGAAGGATTCTCAAATTCAGactgaaaaaagacaaaagactaC
CTCGGTTTGTCActaaataatattttgattttagttaATTTTTAATGGAA
CCATAAATAACAATGCAAGTGAAGGGAACTGAACTCGATTTTGGTTCTAA
TTTGTTTAGTGAAAGCTTTGATTAAAACTAAACCTTAAAGCAAGATaatg
ttttatttcaataaatCATTATATCTCAAAGTAGCGCGCCCAATCCTAAG
AAGTTAAGACGAAATTGTACCATAAAACACGTGCTTAGCAAAGTTGCCTC
GTGCGTTGTGGTATATATCCTTCTGTATGAGattaaagaaaatcttttgt
tctctttttagAATGCAGAGTCAGATTATTTCAATCAATCATATAACAGT
TTAGATGATCAGACACTGTTACAACACGTCGAAGGTACttcctcttttct
tttttatcaaatagaaCAGGTAAATCCTTGAAGTACGAAAACTAATTATC
GAGGAGTTTATAGGCTTCTTTACCCTATGATGTCGAGGTAATTTCTTGGA
ATTACTTGAAACTTTGATAAtatgtaccgggtgacccacgaaaaagttcg
gacctttctcggcgtcttgagacCGAACAAATGTCACAAAGTGCTCGgag
ttttggtatttaaaaagtagatatcctaacttaaaatttgagctatcact
ttttaaatttgaccagctagttctctacttatgaccttttaaactcaaaa
ttcacttttcggaaagtgtaaaaaatacgtaaaaaagaggtattaaatta
atgcaataaattagaaaatctcttataaattgacttatttaacgagtttt
atgacattaataattattaaaaacacctttgaaagtagtttttgtttaaa
acaagactagtttttatcaaaattggcactttcaaggaattttctcaaaa
actgtatatcaaaaacgtctaaaaatacctaatttgatacccctttttta
cctgttttttacactttccgaaaagtgaattttgagtttaaaagctcgTA
ACTAGGGAGcttgtgcgtcaaatttaaaaagtaacgGCTaggattttaag
ttaggatatctactttctaaataataaaactccaagcactttgggacatt
tgttcggcctcaagacgccgagaaacgtccgaactttttcgtgggtcacc
cggtagctTACTCATTATTTATCTCGAATCCCTTTTTAGGCATTGACGAG
GTTGTGGCCGCATTGGAG Coding sequence (CDS) from alignment at sc0000091_pilon:611624..617241+ >XLOC_038483 ID=XLOC_038483|Name=XLOC_038483|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3666bp|location=Sequence derived from alignment at sc0000091_pilon:611624..617241+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGATCTCCCATGCAGGCACATCTTTCTCTCGAGATCATTGTCAGGGTG
TGTGCCTCTTTTCGATCCCGTTCTTTGCGCCGTTCGATGGTCGAAAACTT
ATTATCGTCAAAGCCAACGGCTGTTTACACAAACAATCAATAAATTTGAC
AAGTTAACGACCACTTCGTCTTCATTCCGCCCTCTAAAAGCCCTTAACTT
TAACGAAAGATATAGAAAGGCAGACGctgtatgcaaaaatatttcGATGT
TGGCTTCAGAGCCTGGAGGCACAGAATTTGTCGAGCGAATGACCCTTCTT
AGAACACTTGAAGACATGTGGCGAAATGGTCAAGAGGTTCATTTACTTTC
GCTACCATTGAAATCAACGGAGAACGAAAATCCTTTTTCATCTTTCTCTC
AAGATCATTGTCAGGATGGATCTCCCATGCAGGCACATCTTTCTCTCGAG
ATCATTGTCAGGGTGTGTGCCTCTTTTCGATCCCGTTCTTTGCGCCGTTC
GATGGTCGAAAACTTATTATCGTCAAAGCCAACGGCTGTTTACACAAACA
ATCAATAAATTTGACAAGTTAACGACCACTTCGTCTTCATTCCGCCCTCT
AAAAGCCCTTAACTTTAACGAAAGATATAGAAAGGCAGACGctgtatgca
aaaatatttcGATGTTGGCTTCAGAGCCTGGAGGCACAGAATTTGTCGAG
CGAATGACCCTTCTTAGAACACTTGAAGACATGTGGCGAAATGGTCAAGA
GGTTCATTTACTTTCGCTACCATTGAAATCAACGGAGAACGAAAATCCTT
TTTCATCTTTCTCTCAAGATCATTGTCAGGGTCACAAAGACAATACCAGT
GACAAAACTTTGCCTAAAGTCCCGAAGATTCAACCCGGGGTCACAAAGAC
AATACCAGTGACAAAACTTTGCCTAAAGTCCCGAAGATTCAACCCGGGAA
CCCAAATGTTACTGGCGTCATCAACAATTCGCCTTTGAAATCAACGGAGA
ACGAAAATCCTTTTTCGTCTATCTCTTCAAATCATTGTCAGGAACCCAAA
TGTTACTGGCGTCATCAACAATTCGCCTTTGAAATCAACGGAGAACGAAA
ATCCTTTTTCGTCTATCTCTTCAAATCATTGTCAGGGTCACATAGACAAT
ACCAGTGACAAAGATTCGCCCAAAGTCACAAAGATTCAGCCTGAGGTAAA
TCATAACCTACCGGCATCGGCAAATGAAGTTTCTCTAAAAGAGTCTTTTC
ATAACCAAAGCGACAAGCATATCGACATTCAAGATTTTGATGTCAGTAAT
GTTAAATTACCACCAAGGAAAAAGCCGAGAGGAAGACCAAAAGGACACAA
TTTAACAGTCATCGGAAGACAGAAGAAACGGAAATTGAATAATGGTCACA
TAGACAATACCAGTGACAAAGATTCGCCCAAAGTCACAAAGATTCAGCCT
GAGGTAAATCATAACCTACCGGCATCGGCAAATGAAGTTTCTCTAAAAGA
GTCTTTTCATAACCAAAGCGACAAGCATATCGACATTCAAGATTTTGATG
TCAGTAATGTTAAATTACCACCAAGGAAAAAGCCGAGAGGAAGACCAAAA
GGACACAATTTAACAGTCATCGGAAGACAGAAGAAACGGAAATTGAATAA
TGGTCGCAAAGATAATACGAATAACAAAGCTTTGCCCAAAGTCCCGAAGA
TTCAACCCGAGGTCGCAAAGATAATACGAATAACAAAGCTTTGCCCAAAG
TCCCGAAGATTCAACCCGAGAACCCAAATGTTACTGGCGTCATCAACAAT
TCGCCTTTGAAATCAACGGAGAACGAAAATCCTGTTTCGTCTTTCTCTCA
AGATCATTGTCAGGAACCCAAATGTTACTGGCGTCATCAACAATTCGCCT
TTGAAATCAACGGAGAACGAAAATCCTGTTTCGTCTTTCTCTCAAGATCA
TTGTCAGGGTCACATAGACAATACCAGTGACAAAAATTTGCCCAAAGTCA
CGAAGATTCAACCCGAGGTCACATAGACAATACCAGTGACAAAAATTTGC
CCAAAGTCACGAAGATTCAACCCGAGAACCCAAATGTTGCAGATGTCACC
AACAATCATCCTGACAGATTGGTGGATCATCTATCAACCCAAATGTTGCA
GATGTCACCAACAATCATCCTGACAGATTGGTGGATCATCTATCGTTTAT
TTGTGACCCCAGTCAACGAGCGGTAATCGAGGTTCCGGGTGATGGTCATT
GCTTGCTATACGCTTGGGAAATATGTCTCAATTTTTCTGAGAACTCTTCC
TTGAAGCCTTCCTATGTTGCATTAAGTTCAATGGTTATGCAGCAATATTT
ATTAAGGAAAAAAGAATATAAGAAATTTCTGTGTGATAACGAGTTGAACG
TCGATATGGATAATGAGATAAGGAAATACCTGAATGAAAAAAGTTACGGC
CGTCAGATTGGCGATGAGCCGATTTTTGACTCTCTAACAAATGCCACAAA
TGTCAAAGTTTTTACATGGGAAAGTGCAGAAAATGGATCCTTGATACAGA
TTGGCCACCGCGTTCCTTCAGACAACAACTGGTCTAATGGTACGATCCAC
CTTCACAAAATGGGTCAGCATTACGAGCCAATCGTtgccaaaaagtttca
agGTTTATTTGTGACCCCAGTCAACGAGCGGTAATCGAGGTTCCGGGTGA
TGGTCATTGCTTGCTATACGCTTGGGAAATATGTCTCAATTTTTCTGAGA
ACTCTTCCTTGAAGCCTTCCTATGTTGCATTAAGTTCAATGGTTATGCAG
CAATATTTATTAAGGAAAAAAGAATATAAGAAATTTCTGTGTGATAACGA
GTTGAACGTCGATATGGATAATGAGATAAGGAAATACCTGAATGAAAAAA
GTTACGGCCGTCAGATTGGCGATGAGCCGATTTTTGACTCTCTAACAAAT
GCCACAAATGTCAAAGTTTTTACATGGGAAAGTGCAGAAAATGGATCCTT
GATACAGATTGGCCACCGCGTTCCTTCAGACAACAACTGGTCTAATGGTA
CGATCCACCTTCACAAAATGGGTCAGCATTACGAGCCAATCGTtgccaaa
aagtttcaagAAATGGCAAAGTCCTTATCACGTTCACATGGAATTTCAAT
GCAAGAGACTCAGCGCATGTCAGAAGCCTAAATGGCAAAGTCCTTATCAC
GTTCACATGGAATTTCAATGCAAGAGACTCAGCGCATGTCAGAAGCCTAT
ATCCTCAAAATGGTCGATAATGAAATTCCAAGCACCTCTGGGCATTATAT
CCTCAAAATGGTCGATAATGAAATTCCAAGCACCTCTGGGCATTGTTCTA
TTGAAGGGAAGGATTCTCAAATTCAGactgaaaaaagacaaaagactaCC
TCGGTTCTATTGAAGGGAAGGATTCTCAAATTCAGactgaaaaaagacaa
aagactaCCTCGAATGCAGAGTCAGATTATTTCAATCAATCATATAACAG
TTTAGATGATCAGACACTGTTACAACACGTCGAAGAATGCAGAGTCAGAT
TATTTCAATCAATCATATAACAGTTTAGATGATCAGACACTGTTACAACA
CGTCGAAGGCATTGACGAGGTTGTGGCCGCATTGGAGGCATTGACGAGGT
TGTGGCCGCATTGGAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000091_pilon | genome | sc0000091_pilon:611624..617241 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1807-1833:5592 |
| Aaloc | 1732-1803:4712 |
| Aaloc | 1675-1731:4348 |
| Aaloc | 1627-1671:4196 |
| Aaloc | 1558-1623:3869 |
| Aaloc | 1099-1554:3103 |
| Aaloc | 1039-1095:2777 |
| Aaloc | 982-1038:2525 |
| Aaloc | 886-978:2127 |
| Aaloc | 829-885:1875 |
| Aaloc | 571-825:1360 |
| Aaloc | 475-567:966 |
| Aaloc | 418-474:712 |
| Aaloc | 1-414:1 |
|
