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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000468_pilon:68109..73474+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_038457 ID=XLOC_038457|Name=XLOC_038457|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5366bp|location=Sequence derived from alignment at sc0000468_pilon:68109..73474+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGTTTCACCAAAGCTGCTCATTACCATCTTTCTGATGTTCTTCTGTAT
CAACAAATGCGCACCATCAACGCTCCCTGTTTCTGACAGCACATTGGACG
CTAAATATGGTAAGGCGTTTACACTAGCTTACttacattttcattttgga
tATTAACATACCAGCTattaccactgacctttatatatccctggaccaag
ctatatccaccgccatctttgatcgaagctTTCTTTGTCGTGATGTCATC
ACGTTTGCTAGGCCTTGGATTGAGAATGccataaaattatcaaatttctc
AACTCATAGCAAACGAGTGACACACCAGTTTCATTTGAAAGAGTTACAAT
TAGTTACAAAATGAACCAAACCCACTGACCTATATTTAAAACCCTGGact
aagctatatccgccatctttgatcggagttttttgaaaagtggtacccga
ggagaagccattgcaatgttaaaaattaacgtctaacgccgctacatcat
caaaagaatttgaggaaaaggtagacctagcgctctcgatgcatttacac
cgctatcgagtagtgccgccattagggtaccacttttcaaaaaactccga
tcaaagattttggttggccGAGATTGAGTAGCTTggatataaaggtcagt
gaccaaacctcaaaaaaacctCTCTTAGGATTCAGGGTTCAGTGGTCcag
tccgcacatacccagagTTCCCTGACCCCAGCCTCAGTGTATAATATAAC
AACTTTTCTTTCCACATATAACAGGTGATCCTTACCAAGATTGTGTCGAT
GTCAACGTATGTTATAATTGTCGAGGAACTGGAGGACGTGATCAATTCCA
AACTATGGATGGATCCTGCAACAATCTGGCAAACCCATCTTATGGCGCTG
CTCCCACAAAACACAAACGATACTTGCGTATGTTAATTATTTCATCTATA
ACACTTTATAACAAAGCAactgtagtgcagtggtagagtatccggctacg
gttcgcaaggttgtgggttcaacccctagccgggtcataccaaaggttct
caaaatggtacttgatgctctctgcttgatgctcagctattaagagaagg
atcaaggataattggagaaatccagggagaaagagtggcgccctccccta
cctttgggtagatagctatcgaaagaggagatttgagtcgcctccgactg
cggtcgcagacttacttacttatagaCCATTTGGAGTAGGGAGGCTaaga
ttttgggaaaaaatgtGGGCCACCATGGTTGAGCAACGAAGGAAATTATA
CGCCCTTTTTACACCCTCTAAACACCCTAAAACGTTATTCAATTGCGGAG
AAAAACAGTCGTTATGATTTTAATTGGTCTGTCTAAAGTTGTTCAATGTA
CATAAGTCAGCATAGGTTTCAATATGAGAGGTCTGCAAAAAGTATCTTTC
TCCTTTTTAACACGAGAGCGTTGCAAATTTATTTGAGTCGTCCAGGATTT
ATGTTTAAGGACACAGCCTAATTAACTAAATTAGCCCAAAAGTTTGAATG
TAAAGAGATATTGATTATGTTAGGGCTTTTGAACTGAAAGGTCAAGAAAG
CCTGGTAATCGAGATTCTGGAGTCATTATCCTCTATAATTGACTAGGTTA
AGATTTACATCTGGGAAAATTAGTCACtaggaaaaaatatattttccatc
aaattttttaccatgaattcttttttcatcatttctaGCTGCGCAATATT
TGGTCGGAACAACGGGTTATCCACGTGGCTTTCCGCCAAACAGTAACATG
AAGTCTGGGCACGAGGTTGCCCGTAAAGCCTTCCAATCAGTTGAAAAGTT
TGAAGGGAACAACAATCAACCTCACAAAACATCCATCTTGTTCATGACTT
TTGGACAATTCATTGATCACGATATCACAGGAACAGATAAAGCTCCCACG
GGCGGTTGTGATGTGACGTAAGTTTATTtctcatatattttttatcaata
cactcttctcgagatgcataaatttattgttgtcatcgttttcaaacaga
tttcattgctataaaattacatactcacaatgataattgtgttgtttaca
cttcatgagacattttgaatttcaagtatttttgttttagagttaatgtt
tgccttttgggaatataaattggtttaaatgtataatttcatagcaatga
aatctgtttgaaaacgaggactcCAATAAATTTATggatctcgagaagag
tgtattggcgtatactttaatgggataaattttcgcggggattaaatttc
gcggttgagctcatccgcgaaattttaagatttcgcggggattaattttc
gcggatgagggattttcctgatttttcgagggggtttaatttcgcggatt
ggggtacaaatcaaaatttttgaaaagtgtcaaaacattgaaataaaatt
tttccaggaaaattaagaattattttttcaagtaataagagggtgttttg
gaaaagGGCGAGGAGATATATGTATTACAAAGAACACTGTTTGCAAATGC
TGCTGCCAAAACAAAGCGTCCGAGTAAACCAGAAAACCCATCTGTTACCC
CGAAGACATCTAATGCAGTATTTTGTTAGATTAGGAagttttttaacttg
ttttcCGTTTTCCCTCCTTTGCTTACATATCCTTTTAGatgtttaatttc
aagccagttggattaccctcttgcattgaaaagcttttaaatttaacaat
aagcgatcactttagataaaaattttccaatacctcttccaagtttgtaa
atttgtgaagaaaattttgaggaaaacgattttttgctaacaagcatatc
gaggattttgcctttttcgagggttgcgtgccctcatgtagaagaaaaaa
taaaaaacgataaaaatagaaattttgcggattgaaaaaaaagttcaaat
ttttcgcggaaactaattttcgcggatgggcctttttcaaatttccaatg
ggacttattttcgcggatgacacccaaatccgcgaaatccgcgaaaatta
atccccgcgaaaatttatcccattaaagtagtttatCATTGGTCTAGTTC
TTGATTGGCTGAGGACGTTAATAAATCTGCGCTTCAATCGGATTCATTTT
CGCGGGatttaattcatttttgatatttcgtGAAAATTAAACTCGCGAAA
TGAAGTGATCGATCAAAAGCGAgtaatagtttttttttatttgtctaGTT
CATGACTGATTGATGACGGTAGTAAATGATTGCTTTTACCATACTCAATT
TCGGTGATTTGTTCCAAATCGATACAGTCACAGCTctttaatcaaaaaat
ttgatacATAATAAACTCTATAGTTAGTCTTTATTAGCTGGTTTTCACTC
AGCAAATGTCTACACAAAAATTGCAAATGAGGGGGGATAAGATAtattaa
aacaagaaaaacaagtCTAAATTTGATGATAAATCTGTTAGTTCAATTAC
GCAAATCTTAAATAATCCATATAATGTAATTTCCTCACCAGGGGTTTGTT
TCTTCCAGTCTTCCAGttcaaactaaatcccgtattattattagtattgg
tattattagtattacacgcattataaacgactccagtctatgttAATTAT
CAATCATCTGTTATAGATGCAAGGGAGCGACAGGAGGAATTGAACACCAG
TATCCATGTAATCCCATCTACAAAGATCAATCTTCGACGGGCGCCAAACG
ATGCACGAAACTGACCAGAACACAAGCAGCTTGCCGTTCAAGCTCAACTG
AAATACGAGAACAGGTCAACTTTTTAACTTCTTTTATTGACGGGTCAGCT
GTTTATGGAAGTTCGGATaaaaaaaTGCAATTCCTGAGAACGAATGATGG
TGAGTTGTTGTTCCTccttgtctttttttctacttttgctcgaaaatttt
ttttgcgttgaatgttttttAGCTAAATTACTAAGGGCATAAACagtgtt
taaaattttctcagaatTTAATAATTCATTCGAAAGCGCTTTTAAAAACA
ACCATAGAGCAGTATGCTTTTCGACAAAATCGTCTTCAtaaaaacgacaa
aaacaatACGCGAATTTAGCCCTTTTCGCAAATTTTAGCCcgtttcgcga
aagtaaatgtcttcgAAAATTCTTGGAAGGGCCGTGAAAGTTTTTGCTCG
CCTAAAGAGTATATTGATGTATTTTCTAATTCTTAGGATCAGGGAAATTG
CGAACAACAACAGGCGATTTGTTGCCTGAAGATGAATATAATAATGAACC
GTGTAACAACGAAGGTTTCGAAGGCTGCTTCGCTACAGGTGACAAACGAG
GCTCCGAAAACCCCGCATTGGCTGGCTTGCACACACTCTGGGTACGCGAA
CACAATCGTATTGCCACCGAGTTAAAAGAACTGAACAAATATTGGAGTGG
ATCTAAGATTTTTTGGACGACGCGTAAAATAGTGGCTGCGGAAATGCAAA
ATATCTTACTGAATGAATGGCTACCCATGCTATTTGATACAAACGACATT
GACGGTTATGACACGGACGTCGATCCGTCAATCAGTAATGTCTTCGCGCA
TTCCGTTTTCCGATTCGGACATACATTGGTACCCGATAAATTCCCACTTT
ACGATAACAATTTTAATCCGTATGCCGCGAAACCAATACTGACACTGCGC
GAAGGCTTTCATCATATCAACCCTATTAAGAATCATGGAATCGAACCCAT
CATGTACGGGTTAATCGGTAACGAATCGGAGACTTTCGATACCAAATTCG
CACAAGCTATCTCCCGCCATTTGTTCATTCCTCTTGGTGAAGGTGGTTTG
GCGGATCTCACAGCTATCAATATTCACCGTGGGCGTGATCACGGTTTACC
GCCCTACAATGAATGGCGTCAATTTTGTggtttttcaaaacttaaagaCT
GGGACGACTTGAATGGAGATATGGAAAGCGAAACgattaaaaatttgaag
aaagtttACACCTCTGTTGAAGAAATCGATATTTTTGTTGGCGGGATCGG
TGAAAAACCGGTACACGAAAAAGTGATCGGAAAAACATTCGGCTGTATCA
TGAAGAAGCAATTCAAGGATCTTTTCAAAGGTGATCGGTACTTTTACACC
AACTACGTTTTCGACTATCCACAAACTACTTCTATAGGGAAAGTGACCAT
GAGACAGGTTTTGTGTGATAATTTGAAAGGTGTGGTCTCACTACATGCGA
ACCCATTCGTACCCTTCGATGATGGTTACCACACAAGACATGCTTGTCAA
ACAGACTACAGAGATCCACATTATGAAGGAGCTAATTTGGACCTCTGGAA
AGACATCACTTattaa Coding sequence (CDS) from alignment at sc0000468_pilon:68109..73474+ >XLOC_038457 ID=XLOC_038457|Name=XLOC_038457|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3708bp|location=Sequence derived from alignment at sc0000468_pilon:68109..73474+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGTTTCACCAAAGCTGCTCATTACCATCTTTCTGATGTTCTTCTGTAT
CAACAAATGCGCACCATCAACGCTCCCTGTTTCTGACAGCACATTGGACG
CTAAATATGATGGTTTCACCAAAGCTGCTCATTACCATCTTTCTGATGTT
CTTCTGTATCAACAAATGCGCACCATCAACGCTCCCTGTTTCTGACAGCA
CATTGGACGCTAAATATGGTGATCCTTACCAAGATTGTGTCGATGTCAAC
GTATGTTATAATTGTCGAGGAACTGGAGGACGTGATCAATTCCAAACTAT
GGATGGATCCTGCAACAATCTGGCAAACCCATCTTATGGCGCTGCTCCCA
CAAAACACAAACGATACTTGCGTGATCCTTACCAAGATTGTGTCGATGTC
AACGTATGTTATAATTGTCGAGGAACTGGAGGACGTGATCAATTCCAAAC
TATGGATGGATCCTGCAACAATCTGGCAAACCCATCTTATGGCGCTGCTC
CCACAAAACACAAACGATACTTGCCTGCGCAATATTTGGTCGGAACAACG
GGTTATCCACGTGGCTTTCCGCCAAACAGTAACATGAAGTCTGGGCACGA
GGTTGCCCGTAAAGCCTTCCAATCAGTTGAAAAGTTTGAAGGGAACAACA
ATCAACCTCACAAAACATCCATCTTGTTCATGACTTTTGGACAATTCATT
GATCACGATATCACAGGAACAGATAAAGCTCCCACGGGCGGTTGTGATGT
GACCTGCGCAATATTTGGTCGGAACAACGGGTTATCCACGTGGCTTTCCG
CCAAACAGTAACATGAAGTCTGGGCACGAGGTTGCCCGTAAAGCCTTCCA
ATCAGTTGAAAAGTTTGAAGGGAACAACAATCAACCTCACAAAACATCCA
TCTTGTTCATGACTTTTGGACAATTCATTGATCACGATATCACAGGAACA
GATAAAGCTCCCACGGGCGGTTGTGATGTGACATGCAAGGGAGCGACAGG
AGGAATTGAACACCAGTATCCATGTAATCCCATCTACAAAGATCAATCTT
CGACGGGCGCCAAACGATGCACGAAACTGACCAGAACACAAGCAGCTTGC
CGTTCAAGCTCAACTGAAATACGAGAACAGGTCAACTTTTTAACTTCTTT
TATTGACGGGTCAGCTGTTTATGGAAGTTCGGATaaaaaaaTGCAATTCC
TGAGAACGAATGATGATGCAAGGGAGCGACAGGAGGAATTGAACACCAGT
ATCCATGTAATCCCATCTACAAAGATCAATCTTCGACGGGCGCCAAACGA
TGCACGAAACTGACCAGAACACAAGCAGCTTGCCGTTCAAGCTCAACTGA
AATACGAGAACAGGTCAACTTTTTAACTTCTTTTATTGACGGGTCAGCTG
TTTATGGAAGTTCGGATaaaaaaaTGCAATTCCTGAGAACGAATGATGGA
TCAGGGAAATTGCGAACAACAACAGGCGATTTGTTGCCTGAAGATGAATA
TAATAATGAACCGTGTAACAACGAAGGTTTCGAAGGCTGCTTCGCTACAG
GTGACAAACGAGGCTCCGAAAACCCCGCATTGGCTGGCTTGCACACACTC
TGGGTACGCGAACACAATCGTATTGCCACCGAGTTAAAAGAACTGAACAA
ATATTGGAGTGGATCTAAGATTTTTTGGACGACGCGTAAAATAGTGGCTG
CGGAAATGCAAAATATCTTACTGAATGAATGGCTACCCATGCTATTTGAT
ACAAACGACATTGACGGTTATGACACGGACGTCGATCCGTCAATCAGTAA
TGTCTTCGCGCATTCCGTTTTCCGATTCGGACATACATTGGTACCCGATA
AATTCCCACTTTACGATAACAATTTTAATCCGTATGCCGCGAAACCAATA
CTGACACTGCGCGAAGGCTTTCATCATATCAACCCTATTAAGAATCATGG
AATCGAACCCATCATGTACGGGTTAATCGGTAACGAATCGGAGACTTTCG
ATACCAAATTCGCACAAGCTATCTCCCGCCATTTGTTCATTCCTCTTGGT
GAAGGTGGTTTGGCGGATCTCACAGCTATCAATATTCACCGTGGGCGTGA
TCACGGTTTACCGCCCTACAATGAATGGCGTCAATTTTGTggtttttcaa
aacttaaagaCTGGGACGACTTGAATGGAGATATGGAAAGCGAAACgatt
aaaaatttgaagaaagtttACACCTCTGTTGAAGAAATCGATATTTTTGT
TGGCGGGATCGGTGAAAAACCGGTACACGAAAAAGTGATCGGAAAAACAT
TCGGCTGTATCATGAAGAAGCAATTCAAGGATCTTTTCAAAGGTGATCGG
TACTTTTACACCAACTACGTTTTCGACTATCCACAAACTACTTCTATAGG
GAAAGTGACCATGAGACAGGTTTTGTGTGATAATTTGAAAGGTGTGGTCT
CACTACATGCGAACCCATTCGTACCCTTCGATGATGGTTACCACACAAGA
CATGCTTGTCAAACAGACTACAGAGATCCACATTATGAAGGAGCTAATTT
GGACCTCTGGAAAGACATCACTTattaaGATCAGGGAAATTGCGAACAAC
AACAGGCGATTTGTTGCCTGAAGATGAATATAATAATGAACCGTGTAACA
ACGAAGGTTTCGAAGGCTGCTTCGCTACAGGTGACAAACGAGGCTCCGAA
AACCCCGCATTGGCTGGCTTGCACACACTCTGGGTACGCGAACACAATCG
TATTGCCACCGAGTTAAAAGAACTGAACAAATATTGGAGTGGATCTAAGA
TTTTTTGGACGACGCGTAAAATAGTGGCTGCGGAAATGCAAAATATCTTA
CTGAATGAATGGCTACCCATGCTATTTGATACAAACGACATTGACGGTTA
TGACACGGACGTCGATCCGTCAATCAGTAATGTCTTCGCGCATTCCGTTT
TCCGATTCGGACATACATTGGTACCCGATAAATTCCCACTTTACGATAAC
AATTTTAATCCGTATGCCGCGAAACCAATACTGACACTGCGCGAAGGCTT
TCATCATATCAACCCTATTAAGAATCATGGAATCGAACCCATCATGTACG
GGTTAATCGGTAACGAATCGGAGACTTTCGATACCAAATTCGCACAAGCT
ATCTCCCGCCATTTGTTCATTCCTCTTGGTGAAGGTGGTTTGGCGGATCT
CACAGCTATCAATATTCACCGTGGGCGTGATCACGGTTTACCGCCCTACA
ATGAATGGCGTCAATTTTGTggtttttcaaaacttaaagaCTGGGACGAC
TTGAATGGAGATATGGAAAGCGAAACgattaaaaatttgaagaaagtttA
CACCTCTGTTGAAGAAATCGATATTTTTGTTGGCGGGATCGGTGAAAAAC
CGGTACACGAAAAAGTGATCGGAAAAACATTCGGCTGTATCATGAAGAAG
CAATTCAAGGATCTTTTCAAAGGTGATCGGTACTTTTACACCAACTACGT
TTTCGACTATCCACAAACTACTTCTATAGGGAAAGTGACCATGAGACAGG
TTTTGTGTGATAATTTGAAAGGTGTGGTCTCACTACATGCGAACCCATTC
GTACCCTTCGATGATGGTTACCACACAAGACATGCTTGTCAAACAGACTA
CAGAGATCCACATTATGAAGGAGCTAATTTGGACCTCTGGAAAGACATCA
CTTattaa
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000468_pilon | genome | sc0000468_pilon:68109..73474 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 727-1854:4239 |
| Aaloc | 493-723:3668 |
| Aaloc | 265-489:1741 |
| Aaloc | 112-261:777 |
| Aaloc | 1-108:1 |
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