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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000050_pilon:1848882..1853023+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_038396 ID=XLOC_038396|Name=XLOC_038396|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4142bp|location=Sequence derived from alignment at sc0000050_pilon:1848882..1853023+ (Clytia hemisphaerica_ch_hm2_pilon)
AATGCTGCTCAAGATGTGTACCTATTCGATAGATTGAAACGTTCTGACAT
GGAAATCTATTTTGTACCTCTTCCAATCCAAGTTTCTACTGTTGAATACA
AACCAAAGGTTAATGTGGATGATCTGAATAATGGTTACGAGGAAAAGCTT
CTCCTTCCCTTTAGCTTTTGTAATGAAATAATAGAACACTTTAAAAGTGA
CGATGACGATTCCGATTCCGAAGTCGCTGTAGTAGAAAACGAatattttt
attaccaaaaGCAAATTTATTCATGTTTAAGAATTCACCAAATTAAGTCA
ATCAAAGTAAAGTTGGCGAAAGAAAAAACATGGTTCAACCGCTCAAAGAG
TTTTACTGCACCCATTAATTTGAAAAGGGTCGATCAAAGCACGCTCTCAA
GTTTTATGACAGTAATTCGCGAAGGAAATAACTATTCAATTGCCCATAAA
GATTATCCGGGACTTGAAATATCAGACCTGGCATCGATCATTGTAGCGGT
TGGCTAACACTGCCTGtcttaaatttttatttgaatttactgaacaaatt
gagaaaaaatgttttctctatCACTTTAGCTTCATTAAAGAATATTAAGG
ACGACGGTGATTGTCTTCAAAAGCTGATAGCCTCTTTACATGAAAAGAAC
ATTACAGTGATGAATATTATTGCAAACGTTGGAAAACATATTGGTTCTGG
AGAAACttacttttctgttttttcacCTGGTTTTCAAGGAACGCACTGGG
TGTGTGTATCGTTAGCTATCCCTGAGGGTAAAATGCTTTATTGCGATTCT
CTGGTTTGGGACGCTCCACCAAATATAATGGAATGCCTCAGCTTTATAAC
TTCTTTGTTTGAAGAACAATTTGGAATAGACTCATTTGACCTTCTTTTTG
CTAACACAGGAAAATGTAATGACAATATCTTCCCATATCAAGGGCTAAAC
TCGAACATGTGTGGTGTTGCAAGTGTCATCAGTGCACTCCTCATGACGGA
TAACACTTGCAAAAGTCGAGTTTTGCAAGGTCTGCCACTGTCAGAAAAAG
TGTCATGGGTAGGAAAGATGCATGCTTACAATGACTTTGTCAGAACCGTT
TTGATCAAGTGGTACCAAAATAAGACAATCAATGTGATTGATGTTGGATT
GAAATCTACTAGTCAAGTATGTTTGCTTCGTCCCTGTTTGCATTCCTTTT
CTTTCTGTGTAGTTTTTGCTTGCATCTTGGAATACgcaataatttttgat
aatttctgaAATACTGATATGATTGACTTGAAACTTTCCCAGTGTGAACA
AAATATTGATTATAGCTTTTTGGCAAAACTttgttatcaaattttcattg
atGACGCTTGTTACAATATTATGTTATCATTTTAAAAAATACCAACAATG
GGACCCCTGTAACTATTTTCACATGTGGgtatttttgctcaaatttccTG
TGGCAACTCCACTGAACCAGTTACTgaccagtctgtaaaatacgaACCAT
GTGAACGACTAACATGAAGTTTTGCCCATCGTCTTAGATGGTTATGATTT
ATCACTTGTTAAAATCTGACAAATCAAAAGCTCTggtcaacgtgtatttt
acagataTGTCAGtaaagacacccctgtgtcaaagaGTTTTTATcctgag
gaaaaaggttccactggggctgtgatgCAAGGGTGTTTAAAGTATCCAAT
ACTTTGATATACCGTTTGTGAGTGTTGGAATTGCAATGTAATGTGTTCAT
TTTTACTGTCGCGATCATTCTTTTTACTAGAAAGCTGAATCGTCAACATC
AAGGAATAATGATAATGAAACATCAAGGAATAATAATAATGAAACTGCAA
GAAGTAAAACTACAAGGAAAAATGAAACTGCAGAAATCGGAGTCGAAACC
AATCAAGTTGAAGAAGAAATCGAAACAATTGAGACTTTGAATGATGCAAG
TGGTAAGCAAACCTACTCATTGTTCTTTAGAAAAGAAGATATAATAAATT
AGCTAATATAAGTATAACTACACGCCTTtttcatgcttttttataacaat
cagtaaattttggctgaaactcagttgttcttaatttttttaaattttca
ggcttaaatgttcaaGAGCAAAATTTAGGTTACTCTaaaattttctctga
aaatTCTGAGGCTCAGCTTGTTctttaatagaccttatcgcatttagaaa
aaaacgatgcattgtgggattgttatggaggtattacaatagaaatctcg
agggaattctattccAGTTGGCACGCAACGTAGTTTTAACGCTAATTTAA
TGTTATATGGATGTTgcgaacgttagatgaacgttgaaacaacgttgtgt
gccagctgggattgtAATACTCCCATAACAATCCCACAATCCATCGCTTT
TTTCTAAATGCGATAACGTCTATTGGCCAATTTTCGCCTcgttattatta
aaaaatataaacaaaaagtgCGTATTAAAATGCAAATCATAATCAATTGT
AGCCTGGATacccaagctcataatttttttagaaaaacattttctaaaat
tatagagctaggtacccctagagaatgaaaacaatgaaagtgcaaaccca
tgtttccaaaacatTCCTAGCaaaccctgggtagtaaaaatctaaatcca
tacttaaaaaagtccaaagtccaaaaaaaggtTTGTCTgtattatcatga
ccaaccgtGtttttttATTCCAGCTGATTTAACACATAAACGCCGTTTGT
CATTAAATGGTTGGCAAAAATACATGAGTGAAAACCTTGTAAGTAAACAA
CAttgatacatttttttattttttaccttaATAACTACAGTTTTCCTTAA
AACACTTAATAAGGATTACATAAATTGAAGTGAGGGGGTCCTTCATACAC
CCCTGTCAGATAGACCCGggatccagtggggatgaaaataacggactgaa
actcgatggggattgatcccggggggggtactagggcaagatgggttacg
gggatgctccgctggtcagggtacctttttttcccaggtagggtcgaaaa
aacaccaaaatagaaaaatcagtccctcgtagggtgcctatttttggaaa
atttggggaaaaagtagaaaatttgagaaaattttggaatttcagtccca
ttcagggtcacttttttcgcaaatttcgagtcccacgtagggtccatttt
tcgaacctcagcggagcacccccgtcggtcgacaagggtagtaccccccc
ccccggggattgATATGCCCATATTTTATgaatggggatttcaattcttt
tgttttcaaatcagaaaattcagtggggatgggatatttttgcagcgagg
attggtttatttgattattatcaTAATTGGGGGataatttcccaccgggg
acgatattttggacaattttccaaTGCagaaagggttcccagtgggtctg
tgagaagggggtgtcttaaTTTATCTTAGACTTCTAACAAACATAGCAAT
ATCTATTTTTCAATCCTTCTTTTGATTGATCGAATTTATTTgcatagaaa
ttttcatctgatTTTACAGGAAAAATCATCTGATGAATCTTTCGGGGAGA
TTGCTAAAAAAGCTAGAAAGTCGTGGAATTCACTTTCATCTGAGGAAAGA
AAGGTATCTCATTTGTTATCAACTGATTGTACTTCTTTTCTTGTccactt
tttcttttcaaatttgcgGGTGAGTTAGCTAGGACGGGGACAGTaaaaaa
aGCAATgacttgttttttcttttgtatttaagAATTACAATACAAAAGCG
AGAGAGGGAAAAACGATACCACCTTGTCATTTATGTGGGGCAGCATTCAA
CTACGCTAAACGACGAAAAGAACACATGAACATATGTCCAAAAACCTTTg
catgtacaaaatgtgaattGATATTCGAGTCACCACAGGCATTGAAAGCC
CACGATAATAAACACAGTCAGAAGTTTATGTGTGATAAGCCAGAATgtgg
aaaatgttttgaatgtgCTTCGAAATTAAGTCGCCATCAGAAAACACATG
ATAAATCCAAAGATATTATGTGTCCTGTCTGCAGCAAAAAGTTTTCACGA
AAGGACAACATGGTAAGacatcaaaaaacaaaacacaagtaA Coding sequence (CDS) from alignment at sc0000050_pilon:1848882..1853023+ >XLOC_038396 ID=XLOC_038396|Name=XLOC_038396|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3694bp|location=Sequence derived from alignment at sc0000050_pilon:1848882..1853023+ (Clytia hemisphaerica_ch_hm2_pilon)
AATGCTGCTCAAGATGTGTACCTATTCGATAGATTGAAACGTTCTGACAT
GGAAATCTATTTTGTACCTCTTCCAATCCAAGTTTCTACTGTTGAATACA
AACCAAAGGTTAATGTGGATGATCTGAATAATGGTTACGAGGAAAAGCTT
CTCCTTCCCTTTAGCTTTTGTAATGAAATAATAGAACACTTTAAAAGTGA
CGATGACGATTCCGATTCCGAAGTCGCTGTAGTAGAAAACGAatattttt
attaccaaaaGCAAATTTATTCATGTTTAAGAATTCACCAAATTAAGTCA
ATCAAAGTAAAGTTGGCGAAAGAAAAAACATGGTTCAACCGCTCAAAGAG
TTTTACTGCACCCATTAATTTGAAAAGGGTCGATCAAAGCACGCTCTCAA
GTTTTATGACAGTAATTCGCGAAGGAAATAACTATTCAATTGCCCATAAA
GATTATCCGGGACTTGAAATATCAGACCTGGCATCGATCATTGTAGCGGT
TGGCTAACACTGCCTGtcttaaatttttatttgaatttactgaacaaatt
gagaaaaaatgttttctctatCACTTTAGCTTCATTAAAGAATATTAAGG
ACGACGGTGATTGTCTTCAAAAGCTGATAGCCTCTTTACATGAAAAGAAC
ATTACAGTGATGAATATTATTGCAAACGTTGGAAAACATATTGGTTCTGG
AGAAACttacttttctgttttttcacCTGGTTTTCAAGGAACGCACTGGG
TGTGTGTATCGTTAGCTATCCCTGAGGGTAAAATGCTTTATTGCGATTCT
CTGGTTTGGGACGCTCCACCAAATATAATGGAATGCCTCAGCTTTATAAC
TTCTTTGTTTGAAGAACAATTTGGAATAGACTCATTTGACCTTCTTTTTG
CTAACACAGGAAAATGTAATGACAATATCTTCCCATATCAAGGGCTAAAC
TCGAACATGTGTGGTGTTGCAAGTGTCATCAGTGCACTCCTCATGACGGA
TAACACTTGCAAAAGTCGAGTTTTGCAAGGTCTGCCACTGTCAGAAAAAG
TGTCATGGGTAGGAAAGATGCATGCTTACAATGACTTTGTCAGAACCGTT
TTGATCAAGTGGTACCAAAATAAGACAATCAATGTGATTGATGTTGGATT
GAAATCTACTAGTCAAAATGCTGCTCAAGATGTGTACCTATTCGATAGAT
TGAAACGTTCTGACATGGAAATCTATTTTGTACCTCTTCCAATCCAAGTT
TCTACTGTTGAATACAAACCAAAGGTTAATGTGGATGATCTGAATAATGG
TTACGAGGAAAAGCTTCTCCTTCCCTTTAGCTTTTGTAATGAAATAATAG
AACACTTTAAAAGTGACGATGACGATTCCGATTCCGAAGTCGCTGTAGTA
GAAAACGAatatttttattaccaaaaGCAAATTTATTCATGTTTAAGAAT
TCACCAAATTAAGTCAATCAAAGTAAAGTTGGCGAAAGAAAAAACATGGT
TCAACCGCTCAAAGAGTTTTACTGCACCCATTAATTTGAAAAGGGTCGAT
CAAAGCACGCTCTCAAGTTTTATGACAGTAATTCGCGAAGGAAATAACTA
TTCAATTGCCCATAAAGATTATCCGGGACTTGAAATATCAGACCTGGCAT
CGATCATTGTAGCGGTTGGCTAACACTGCCTGtcttaaatttttatttga
atttactgaacaaattgagaaaaaatgttttctctatCACTTTAGCTTCA
TTAAAGAATATTAAGGACGACGGTGATTGTCTTCAAAAGCTGATAGCCTC
TTTACATGAAAAGAACATTACAGTGATGAATATTATTGCAAACGTTGGAA
AACATATTGGTTCTGGAGAAACttacttttctgttttttcacCTGGTTTT
CAAGGAACGCACTGGGTGTGTGTATCGTTAGCTATCCCTGAGGGTAAAAT
GCTTTATTGCGATTCTCTGGTTTGGGACGCTCCACCAAATATAATGGAAT
GCCTCAGCTTTATAACTTCTTTGTTTGAAGAACAATTTGGAATAGACTCA
TTTGACCTTCTTTTTGCTAACACAGGAAAATGTAATGACAATATCTTCCC
ATATCAAGGGCTAAACTCGAACATGTGTGGTGTTGCAAGTGTCATCAGTG
CACTCCTCATGACGGATAACACTTGCAAAAGTCGAGTTTTGCAAGGTCTG
CCACTGTCAGAAAAAGTGTCATGGGTAGGAAAGATGCATGCTTACAATGA
CTTTGTCAGAACCGTTTTGATCAAGTGGTACCAAAATAAGACAATCAATG
TGATTGATGTTGGATTGAAATCTACTAGTCAAAAAGCTGAATCGTCAACA
TCAAGGAATAATGATAATGAAACATCAAGGAATAATAATAATGAAACTGC
AAGAAGTAAAACTACAAGGAAAAATGAAACTGCAGAAATCGGAGTCGAAA
CCAATCAAGTTGAAGAAGAAATCGAAACAATTGAGACTTTGAATGATGCA
AGTGAAAGCTGAATCGTCAACATCAAGGAATAATGATAATGAAACATCAA
GGAATAATAATAATGAAACTGCAAGAAGTAAAACTACAAGGAAAAATGAA
ACTGCAGAAATCGGAGTCGAAACCAATCAAGTTGAAGAAGAAATCGAAAC
AATTGAGACTTTGAATGATGCAAGTGCTGATTTAACACATAAACGCCGTT
TGTCATTAAATGGTTGGCAAAAATACATGAGTGAAAACCTTCTGATTTAA
CACATAAACGCCGTTTGTCATTAAATGGTTGGCAAAAATACATGAGTGAA
AACCTTGAAAAATCATCTGATGAATCTTTCGGGGAGATTGCTAAAAAAGC
TAGAAAGTCGTGGAATTCACTTTCATCTGAGGAAAGAAAGGAAAAATCAT
CTGATGAATCTTTCGGGGAGATTGCTAAAAAAGCTAGAAAGTCGTGGAAT
TCACTTTCATCTGAGGAAAGAAAGAATTACAATACAAAAGCGAGAGAGGG
AAAAACGATACCACCTTGTCATTTATGTGGGGCAGCATTCAACTACGCTA
AACGACGAAAAGAACACATGAACATATGTCCAAAAACCTTTgcatgtaca
aaatgtgaattGATATTCGAGTCACCACAGGCATTGAAAGCCCACGATAA
TAAACACAGTCAGAAGTTTATGTGTGATAAGCCAGAATgtggaaaatgtt
ttgaatgtgCTTCGAAATTAAGTCGCCATCAGAAAACACATGATAAATCC
AAAGATATTATGTGTCCTGTCTGCAGCAAAAAGTTTTCACGAAAGGACAA
CATGGTAAGacatcaaaaaacaaaacacaagtaAAATTACAATACAAAAG
CGAGAGAGGGAAAAACGATACCACCTTGTCATTTATGTGGGGCAGCATTC
AACTACGCTAAACGACGAAAAGAACACATGAACATATGTCCAAAAACCTT
TgcatgtacaaaatgtgaattGATATTCGAGTCACCACAGGCATTGAAAG
CCCACGATAATAAACACAGTCAGAAGTTTATGTGTGATAAGCCAGAATgt
ggaaaatgttttgaatgtgCTTCGAAATTAAGTCGCCATCAGAAAACACA
TGATAAATCCAAAGATATTATGTGTCCTGTCTGCAGCAAAAAGTTTTCAC
GAAAGGACAACATGGTAAGacatcaaaaaacaaaacacaagtaA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000050_pilon | genome | sc0000050_pilon:1848882..1853023 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1492-1851:3783 |
| Aaloc | 1408-1491:3570 |
| Aaloc | 1345-1407:2726 |
| Aaloc | 1228-1341:1838 |
| Aaloc | 1180-1227:1781 |
| Aaloc | 508-1179:495 |
| Aaloc | 13-504:1 |
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