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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000171_pilon:711214..716770+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_038124 ID=XLOC_038124|Name=XLOC_038124|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5557bp|location=Sequence derived from alignment at sc0000171_pilon:711214..716770+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCTAATCAACGAGAGACCGCGCATGCAAAACGGAGAAGAGATGGGAA
GGGCAATCGCATACAACACATGATTTCACAAATCACACAACTGTTATCTA
AAGGTTGCAGTCACGCCAAATTGAATTTTCTTGCTACTTCACTGGCCGAT
ACTTTACGAATGGGTTATACGGAACACGAATTGTTGATGTCACTTTTAGA
TGATCAAGATTCTGAGTTTAATGACATCTGGATCTGCGACTTAAAATGCA
ATGTGACTTCATACCTCGCAAACGTCAGTGATTATCTTGACGGTAATACA
GAGAACGAAATACTATCATCATCCTCTCAGCAGAATGCACTTGTACAGAA
TGAAGAAGAACACGCAGGGGAGGCGACGAAACCCTTGGCCGATACACAGA
AAAACCAATATTCAGAAGTAAGTTCTGATCCTAGTCTTGAAATAACGGAC
AATGCTCCAAATTTTCGATTGATGACTTCGAAATGCTCCATAATTGATGA
CGTACCAAGTCAAACTAACGAGTTTGAAATGAGTATAATAAAGAAATGCC
GAACACTTGTCAGCCCCGGAATACTGCATCTTAGAAATAGTCTTTCGAAG
CTGGGTATGGAGCATGTCACATTTTTGTTTTCGTTCCCTCCAGCAATAAA
TTCATGGGTTGATAAATTGAATCGGGACACGGACGTCGCTCATGAACTTG
CTACTTGGTCAAAGTTTTTCGCACCTGCATTTGGGAAATGTTTATCATTA
TTTAATGtttatcattatcattatttatttgacgtcaaggAGATCAGACG
TCAAATACTTTTTTGGAAGAGCTTTagtaaaaatacaacaaaatctacaa
aaattctcaaaaatctatgaaatctcagtattttttactaaaataagCTC
ACCAAAACCAACTCAATCACATCATCAAcctcaaaataaccaaaatggaA
GAGGACACGCCGAATGACATCTCCTCGATCGATTTATCAGAATCAGTCAC
CGTACCAAGCTGTTCACCGACAAACTGTCTCATCACCGAAGAAACCAATA
CTCTACAATGCTCCGTCGTAAAATGCTCTCGCCATGTGCACATCAAGTGC
TCGCAACTCCTTGCGTACCAAGTGCAAGCTCATCTAAATAGCCAGAGAAA
TAAAACAACTCGCTCCACAGCAAAGTCTACTTTCATCTGTTTCAACTGTG
TGGAAGTATCCAAAGATATAGTCTTACTATGCCAGGGGAAAGAAGAAGAA
CTGAAGAAATCCATTGAACAGAAAGATAAAGAGTTAAATCATTGGAAAGT
TAAATATAACACACAAAGAACAAACAAAGTCGAAGAACACACCGTCAAAG
CTCTTGACAGGAAGATTCAAGAgcaatttaaaacttttgggGAGACAATT
AAATCTTCAATTCTAGAAGAAATCCAGTCATCCTTGACCAAGGTTGAGGA
TCAAGTAACCAAAGCCATAACGTCCTACGCTGACGCAACTAAAATTACGT
CTCAAGTAACAACAAGCGGTTTAAAGTCCATTATAAAAGAGGCTCGCTAC
GAAgagattaaagaaaaaaaagaccatGACCAGCGGCAAAGAAATGTCGT
CATCCATGGAGTTGCTGAATGGACTGGTGAAGATAAAAACGACTGTGATA
AAAGGTATATTAAAAGCCTCATCAAGACGGTAAAAATTCCACCTCCAACT
ATAAAGAACGTATCGAGAATCGGTACCGAGGAAACCAACAAAAAGAGACC
AATAAAACTTGTCCTTggttcagaaaaagaaaagttgtcCCTCCTTCACA
GCCTATCAGCCCTCAAAGGAAATGACGACTATAAAGGAATAAGCATTACG
GAAGATCTAACTCGAACTGAAAGAGCAGTTCTAAAGGAATGGCTGGATAA
AGCAAATAATCTGAACCTAGACGATTGGGTACAATGAACCTACGTGCTTC
AAAAACGAATCAATCCGAAATGCATTGATCTGATGCTAACGAATTACCAA
AGAAGTTTTCAGGGCTCTTCCTCTGTATCTAATAGCCTATCGGACTTTCA
CAACATCACAATAAGCGTCTTAAAAACCACTTTTGAAAAGTGTCCACCTA
AAGCCATTAAATATAGATGCTACAAAAATCTTAACgaagatcttttcaaa
aataatttaacacAAGTACTAGAGTCGAATCGCAACTTTGAacataaaaa
gaaaagtgtaGTAAATCTTCTAAACGCTGAAGCAccgataaaaactaaaa
tactaaGAGGTAATGATAAACCTTTCATGACAAAATCACTACGAAAGGCC
ATGATGCATCGATCTCGACTTAATAACATTAAACGAAAAGACCCCTCTAA
CATCAACAAATATAATTACAACCAACAGCGAAACCgatgcttatatctcc
tgagaaacactaaaagaagattttatgaatctctggatgaaaagcaaatc
actgacaataaaagattttggaaaactgtGCGCCCTTTTTTCTCTAATAA
AGGACCAATAAGTGAGAAAATAACcttagtcgaaaatgatgaactgatta
aagatgataaagaaattggaaaaatgtttaatgAGTTCTTCATAAATATc
actgaaaaattagatctcAATCAACCACCAACAGAACCAGTGCCTCTTAA
TGAACTTTCTgataatattcttcaaaatgaaataatgctttttagaaacc
accctagtatactcaaaataaaagaaaaggtatcaaacaatgaaaactcC
TTCAAGTTTAGAAACACCACCAAAGACGAAGTAGAGAAGATAATTAGTAA
CCTTAAGACAAATAAGTCTCAAGCGGAAAATGATATACcagcgaaaataa
ttaaaaaatactctcACTTATTTGCAAGCTGCTTCTCTATAAGCATAAAT
GACTCCTTCAGCTCAGGTATTTTTCCCAACATTTCCAAGTTCGCGACAGT
CACCCCAGTCtacaagaaaaattctaaaaacgataaaagtaaCTATAGAC
CAATAAAGCTTGGTCCTCACTTGTTGAAAAAATCGCGTCTAATCACTAGA
CGCCTGCGTCTAACATTAGACGCGCGCGACTAAGTGTTTGGAACCTCTAG
TGAGTACACTCGTTAGACGCGGGCGTCTAGTGTTAGACGCGGGCGTTTAG
TGTTAGACGCCTGGACTTTGACAAAATTTGTTAGACGCGTggaacaaaaa
attttgttccGCGCGTCTAACGTTCAAAGGCACCGCAATGTAAACAGAAT
TAAATGTCCCCAAAGTTGTGAATTCTGGTAATCttttcatatctttttcg
tattttttcgctctttttgaaaaatattttttaactctttttgtcataac
ttttgatctaatgaagcaattttaaagtttgatgtaccaaaattttagtt
aaACCTTCCTCTAAACGATAacgaaaaaatcaagctaatatattttttta
ctttttcgcaattttgaatcaaacaggggaaagttttttcagagacatCT
GGTATGATGTCTCTGACAGGGATTGTTGGCTTTCTCCAGTGGCCAGAAAC
TTTAATGTTACAAAGAGACGTTCTCTAACTGATATTGGCTGATGCATTGA
GTGGTTTTCTTGCTGATACGATGTTGAATTAGTGAGAGAAGATGCTCAAA
GCAAGATGGAGTCATTCTTTGATACCGAAGAAACATTTCACTGTCTTTTA
GCAATGTTTAAAACAAGAGTATTAAACGTTCCATGGATTGGTCTTTCTTG
AAAAATATCTCGTACCCAAAACCACCTGCGACGCGCTTTTCtcctatttt
gtctttttcgtAACAAAAGTAGAAGGAGCAAATCTTCACAATTATCAAAG
TAGCTTTCATCATCACTGCTATCCATCTTCTTTCCATCATTCAATAAGAA
AACATAAACTGAAGAGAAGCTCAAACTCATAACTTCATATTCACATTTCC
CACATTTCCCATATTTTAAtcctttaattcaaaaaagttcatgGTAGTGA
GGACAACAAAGACATAATTTCTAGACGCACGCGCCTAAGGACTCGACGCG
CGCGTCTAATGTTAGACGCGGGCGTCTAGTGATTAGACGCGATTTTTTCA
ATAAGTGAGGACCAAGCTTAAGTATACTGCCGgtaatatccaaaatttac
gaaagagtatatcacaatcaaatatcagaatactttgagcactactttga
tgaacaacaatgtggtttcaggaaaggatattccactcaaacctctcttc
tcccaatagaagagctctggaagctagccaatgacaaaaaagatgttttt
ggggCACTGCTCATCGACCTTTCTAAGGCCTTTGACTGCATGTGCCACAA
ATTACTTGTAGCAAAGATCAGTGCATACGGGTTTGATGACCTTTCCACTG
GGTTAGTCAAGAGTTATCTAGAAAATAGGCAACAAAGGACAAAAGTAGGC
AACGAACTGAGTAACTGGATCAAGATCAAGGATGGTGTTCCCCAGGGATC
AATCCTTGGCCctctgtttttcaatatttatatctGTGACCTCTTTTTCA
TAATTGAGGATACTAAGGTTGCGAATTATGCGGACGATACGACACCCTAT
GTTAGTGCTCCTACCTGGACTGAAGTAAGTGGCTTTCGACTAATCAAATG
GTTGGTAATGCTGACAAATGTCAGCTAATAGTTAACATCATTGACGACTC
GCTCTATCTAAATATTAGAGAAGAAACtgttttcaataccaaaacgtcaa
agattcttggagtaaccttcgataatcttttgacgtttgaatcgcatata
gaaaatctttgcaagaaagctagtttgaaaataaccgccttagccagaat
gagcacatatctcactttcgaaaaaaagaaacgcttgatgaatgctttca
ttaaatgccacttcaattactgtcctctcatatggatgtttcatagcaga
gctctagaggataaaatcaacaatctacataaaagatgcttgagaatcgt
ttactcagactacaactcatcattcgatgatctgttgaaacttgacaacg
gttccaccttccatcaacgagcaattcaatccttatccacagagctattt
aaatcaaaactcaatgaatcagaaagtaaaatatttctcaaaaaccaatg
taagatcaaaacgagaaaaaggAATTCCTTTCGTAGTAGAGTAGTTGAAG
GTGAAATGAATGGGATATTTATTTTAGCTTTCctgggacctaaaatctgg
gctacccttcccgatgactgtaaaaaacttaaaaacctagatgaatttaa
aaaagaaatcaagcaatggaggcccattacttgtccttgccgaaactgtc
gcacttttatccatggcgttggtttcattgattgaatttaaattaatttg
taattaatagttgatattgattagcctcgagctaagtacacattgtacta
ctttgcatcaactttaaagaaaagaaacataaacataaacataaacataa
acatcaaAGGGATTTTTATTGGAACTGCTTCTGTGGTTTGTGAAATTTGA
TTACTGA Coding sequence (CDS) from alignment at sc0000171_pilon:711214..716770+ >XLOC_038124 ID=XLOC_038124|Name=XLOC_038124|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1596bp|location=Sequence derived from alignment at sc0000171_pilon:711214..716770+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCTAATCAACGAGAGACCGCGCATGCAAAACGGAGAAGAGATGGGAA
GGGCAATCGCATACAACACATGATTTCACAAATCACACAACTGTTATCTA
AAGGTTGCAGTCACGCCAAATTGAATTTTCTTGCTACTTCACTGGCCGAT
ACTTTACGAATGGGTTATACGGAACACGAATTGTTGATGTCACTTTTAGA
TGATCAAGATTCTGAGTTTAATGACATCTGGATCTGCGACTTAAAATGCA
ATGTGACTTCATACCTCGCAAACGTCAGTGATTATCTTGACGGTAATACA
GAGAACGAAATACTATCATCATCCTCTCAGCAGAATGCACTTGTACAGAA
TGAAGAAGAACACGCAGGGGAGGCGACGAAACCCTTGGCCGATACACAGA
AAAACCAATATTCAGAAGTAAGTTCTGATCCTAGTCTTGAAATAACGGAC
AATGCTCCAAATTTTCGATTGATGACTTCGAAATGCTCCATAATTGATGA
CGTACCAAGTCAAACTAACGAGTTTGAAATGAGTATAATAAAGAAATGCC
GAACACTTGTCAGCCCCGGAATACTGCATCTTAGAAATAGTCTTTCGAAG
CTGGGTATGGAGCATGTCACATTTTTGTTTTCGTTCCCTCCAGCAATAAA
TTCATGGGTTGATAAATTGAATCGGGACACGGACGTCGCTCATGAACTTG
CTACTTGGTCAAAGTTTTTCGCACCTGCATTTGGGAAATGTTTATCATTA
ATGGCTAATCAACGAGAGACCGCGCATGCAAAACGGAGAAGAGATGGGAA
GGGCAATCGCATACAACACATGATTTCACAAATCACACAACTGTTATCTA
AAGGTTGCAGTCACGCCAAATTGAATTTTCTTGCTACTTCACTGGCCGAT
ACTTTACGAATGGGTTATACGGAACACGAATTGTTGATGTCACTTTTAGA
TGATCAAGATTCTGAGTTTAATGACATCTGGATCTGCGACTTAAAATGCA
ATGTGACTTCATACCTCGCAAACGTCAGTGATTATCTTGACGGTAATACA
GAGAACGAAATACTATCATCATCCTCTCAGCAGAATGCACTTGTACAGAA
TGAAGAAGAACACGCAGGGGAGGCGACGAAACCCTTGGCCGATACACAGA
AAAACCAATATTCAGAAGTAAGTTCTGATCCTAGTCTTGAAATAACGGAC
AATGCTCCAAATTTTCGATTGATGACTTCGAAATGCTCCATAATTGATGA
CGTACCAAGTCAAACTAACGAGTTTGAAATGAGTATAATAAAGAAATGCC
GAACACTTGTCAGCCCCGGAATACTGCATCTTAGAAATAGTCTTTCGAAG
CTGGGTATGGAGCATGTCACATTTTTGTTTTCGTTCCCTCCAGCAATAAA
TTCATGGGTTGATAAATTGAATCGGGACACGGACGTCGCTCATGAACTTG
CTACTTGGTCAAAGTTTTTCGCACCTGCATTTGGGAAATGTTTATCATTA
GGATTTTTATTGGAACTGCTTCTGTGGTTTGTGAAATTTGATTACTGAGG
ATTTTTATTGGAACTGCTTCTGTGGTTTGTGAAATTTGATTACTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000171_pilon | genome | sc0000171_pilon:711214..716770 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 751-798:5510 |
| Aaloc | 1-750:1 |
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