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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000021_pilon:376463..380502+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_038080 ID=XLOC_038080|Name=XLOC_038080|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4040bp|location=Sequence derived from alignment at sc0000021_pilon:376463..380502+ (Clytia hemisphaerica_ch_hm2_pilon)
AGAAACATGACTGGTTTGTGGTTGTCAATCATTTGTATCTCGTATTTGTC
GATTGCCGTCCAAGCTGAAACAACTGGTAATTATCTTGAatatatacacc
cctgtctcaaagcaCCGGTGGAACTTTGTTCCTCAGTGGTGATGAAAATT
CCTggggatataaattctattgttccaaggatAAAACatccagtggggat
gatttTAGACTgcagtttttaaacattgattttcggatggggatgaaatc
aaagtaagcAATGACTTTAAGTTTGAAACTATCTATTTACAAAGCAAAGG
TTACGATCTACAATCGGAAAATCCTCCAGACAAGAAAAAGTAATTTACAT
TTTCGACTGTTAGTTTATtgtacaaaagaagaaaaaagcctTATTTAAAT
CGTTCACTGTTTTAGATGCAAGAGCCGGGGGTGAAGATTTTTCGATCGAA
TGTGATACCGAAAAGATGACGATTTATATTCTTAAAGACGAAATTTCAAT
TCCTGAAAGCGATATTTCCAAATACAACATCTCATGGAATGATCCTACTT
GTGGACCAAGTGAACAATCAAATGAAACATATTTGGTTTTGGAGGCTGGT
TATTCGTCTTGTGGAACCAAAGCTGTTGTTGAAGGCGATCATGTTATATT
CAAGAATAAGGTAAATTAAGTAAGATTGTTGATGTTTTTATTCGGCATTG
GAAATAGTCGTGATTAGGGACACTCGATACAACTGAGAGCATGTTTCGAA
GCTATGACACTAAAATTCTTTTTACAGTATAtagcccccaaaacggaggc
tgcccccaaaacggagcttttcattaaaattaagattctgacttgtagat
ttatcagaattaaacgatttttgtatattttgaaagaatgatggttatac
ttaaaaatgagcatgtttttgctggtttgagacagattcaaaataacata
tttgcgtctaaaggaaatattttaacaccaaaatgagacaaaaattgcat
ataactcactctagctccttggatattgaaaataagttatgaaaacgggg
tataggaaactttctacacctaatgccgttcagaaaatgcaaatacatct
gtgactttagaggctgggtaaaagatatagcatcttgaaggtcaaccagt
attttggagccctagaatcagcattgacaaaaccgaaaattctaaatatg
agaaaaagcaaaaagtcttggaattctattcctatcaccttgagttagta
gtttataacaaaattaacattatatataaaaatttttgctgaatcggcaa
aaacggcaaattctgtcatttttttgcaaaatataggagaaaaatatctt
taaagcttaatattttcagtttcagttaagctttttttctaaaattttca
cagcttattccatacatgaatggaactattttcaaaagagatttgttttc
aaaaacttgattaagacgttgttaaatcaaaattgtcattttaaaaattt
ctaaattttcagtttggactttgcaatatcgaaaatcttaaaatatttca
taaaagtcataaattttaaatccatcgggtcgtaaatttaagggaaaaca
caaatatgttcaagTTTTCCACCCCTATTAcaactgggcttaataatttg
attttaactacacctccgttttgggggccccaaacctgcattttgacaac
caggggtatactgtgaagattttatcaaataaatttatgcccaaaaccct
ctaaatcatatttcaaaactatggtcaaaattttgtattcatatcttaaa
gatatcttgaGAAATTTTTAAGCGATTGAAGAATAttgtttaaattgaaa
attttgaaaaagaacttccaggaaataaagtagagatgttaaaggtgttc
atgcagcaaaattttttgtaaaatctcttttcctctagatttgagagaaa
tttcaaatttgatcgccgttttgggggtcACATACTGTAGAGAaaattac
acccccttctcacaaacgtAGTAGGAATTTTTACCCATTGGAGTTAGAAA
TtacgtttctttataagaacatatataAGGACATTTATATAAGAGCATAG
Ggattcgatagccaaaatgttaagaacaagttaggaatatttttaggttt
aaatctgaaaaacttaaaacgggcttcaaaaactttggatgttcttataa
aaaaacgtgtaggaatTTATACTAATTCTATGCTTATAATAAtgTgaTaa
atttcttttacCAGGTATCCATCAATTTGAACAAAACAAACGCATATCAA
AATGATCTATTGGAAAGGATTGATACCTTCGCCACATATTCCGTTGAATG
CAATATTCCACAAGGTGTGAATGTAACACATGAAAATGGAGTGAATATTA
CCAAAACAGCAGATTTGGTTGAAGGTGTATCAAGTAAGTTAAAGATATCA
GCAATTAAAAATTTCTATGAAACAACTTACATGGGACATAACGCAGCATG
CCACATAAATCATATTAGTGGAGAAATCTTATAATTTTCTCATTTTACTG
AGAACTTAAGAACAAATTGAGATTAGTTTCAGACTCAAATCTCGGAAATA
GCCAAAAGAATACTGAAGCAAGTAAGTTTatagactaaaaatattttcga
tataAAGCCCACtttggtttttgaaaattaagGTTGGTCGAATTCTCCAT
AATTTTGTGTACAGGTTGATGCATTCTGAAAATGATGGTATTTTACTATA
TCTACTTTATCTTTCTAGGTTCGACTGACGAATTCACTGTCTCGATAAAT
CTCCATAAATCatcaaatttcaatgaaagtctTACATATCCTGCAGTTAT
TGATAGATTGGGACGTTTTAATTTGGAACTTGAAATTGACACTGTTGCAA
ATTTGTATATTATTCCACGAGATTGTCATGGTACTTCTACATCTGATCGA
GATGACGTCATTCGGGAAGCTATTGTCACTGACGGGTAATTCTTTTTGAT
TACATTTTCATTCTCAATCTTTAAATTCTGCTCTATTGAATAATGCAGGT
TCCATATGATTTGACCATGATTGATAAAAAATCACTCGCCGTATTGAACA
TTTCATCAAAACTTGTCATTTATACCCTAATAAGCGATAGGGAGATATGT
GGTGAAAAATTAGGTAGCTAGATTTCAGCATATGGCTTGAATCTTTACCC
GTAACattaatacaattttttgccatttcttactttctaaataaacaaac
ttgACAATTTCAACACTGTTTTAGATGTCCCAATACTGACCACGTTTTCA
AGGAAGAGTCTACCGCTGACAATGGAAAGAAATTCCGATTTTCATTGAAC
GTATTCCGATTCAAAAACTCGAACGGTATGGTCTACATTCATTGCTCTGC
TCACGTCTGTTTGGAAGGAAGTAATACCACAGAATGTCAATTCGGTTGTG
AACAAAACAGCAGACGACGAAGACGTTCAGTGGAGGAGAATGCATTGACA
CTAAATGATGATCTTTCCAAAGATTATGACATTCGAACTGGATTGATTAT
CGTAACAGAAAATTCTAAAAGTAAGTTCCTGAAAATTTATGCTAGAAGTA
CTTTGGATAAGCAATGCTAAGCTGtctctttttaacaatttccaTAAAAC
TTTAGAAAACAGATTGTATCTACTTATTATGATCGAGTTGTGGAAATTAT
TACGGTATAAACATGAATGGTACAAAATTATAATAATTCTAGGCtcaata
taaaaacattttcattaggaaatttaaaataaaagagcTATCGTCAGTTA
CCACATTTCCAAATTTGTATTATCTTTCTAGATGACGACTCATTCCAACA
AGACACCCAAGAATCACCCAACAATACTCAATTCTTTCAAACCACGACCA
ATATCATTCTCATTGCAATCATCTTGGTAATGTTGACTTTAGTATGTTCT
CTCTTGGTTTTTGTTGGCTTACGTCGCCGTCGAAGTGGTTCAAAAAGATA
TAGTGTCCCTGGATCTCCTTCGAAGATGGAAATGCATTAA Coding sequence (CDS) from alignment at sc0000021_pilon:376463..380502+ >XLOC_038080 ID=XLOC_038080|Name=XLOC_038080|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2406bp|location=Sequence derived from alignment at sc0000021_pilon:376463..380502+ (Clytia hemisphaerica_ch_hm2_pilon)
AGAAACATGACTGGTTTGTGGTTGTCAATCATTTGTATCTCGTATTTGTC
GATTGCCGTCCAAGCTGAAACAACTGAGAAACATGACTGGTTTGTGGTTG
TCAATCATTTGTATCTCGTATTTGTCGATTGCCGTCCAAGCTGAAACAAC
TGCCGGGGGTGAAGATTTTTCGATCGAATGTGATACCGAAAAGATGACGA
TTTATATTCTTAAAGACGAAATTTCAATTCCTGAAAGCGATATTTCCAAA
TACAACATCTCATGGAATGATCCTACTTGTGGACCAAGTGAACAATCAAA
TGAAACATATTTGGTTTTGGAGGCTGGTTATTCGTCTTGTGGAACCAAAG
CTGTTGTTGAAGGCGATCATGTTATATTCAAGAATAAGCCGGGGGTGAAG
ATTTTTCGATCGAATGTGATACCGAAAAGATGACGATTTATATTCTTAAA
GACGAAATTTCAATTCCTGAAAGCGATATTTCCAAATACAACATCTCATG
GAATGATCCTACTTGTGGACCAAGTGAACAATCAAATGAAACATATTTGG
TTTTGGAGGCTGGTTATTCGTCTTGTGGAACCAAAGCTGTTGTTGAAGGC
GATCATGTTATATTCAAGAATAAGGTATCCATCAATTTGAACAAAACAAA
CGCATATCAAAATGATCTATTGGAAAGGATTGATACCTTCGCCACATATT
CCGTTGAATGCAATATTCCACAAGGTGTGAATGTAACACATGAAAATGGA
GTGAATATTACCAAAACAGCAGATTTGGTTGAAGGTGTATCAAGTATCCA
TCAATTTGAACAAAACAAACGCATATCAAAATGATCTATTGGAAAGGATT
GATACCTTCGCCACATATTCCGTTGAATGCAATATTCCACAAGGTGTGAA
TGTAACACATGAAAATGGAGTGAATATTACCAAAACAGCAGATTTGGTTG
AAGGTGTATCAAGTTCGACTGACGAATTCACTGTCTCGATAAATCTCCAT
AAATCatcaaatttcaatgaaagtctTACATATCCTGCAGTTATTGATAG
ATTGGGACGTTTTAATTTGGAACTTGAAATTGACACTGTTGCAAATTTGT
ATATTATTCCACGAGATTGTCATGGTACTTCTACATCTGATCGAGATGAC
GTCATTCGGGAAGCTATTGTCACTGACGGGTTCGACTGACGAATTCACTG
TCTCGATAAATCTCCATAAATCatcaaatttcaatgaaagtctTACATAT
CCTGCAGTTATTGATAGATTGGGACGTTTTAATTTGGAACTTGAAATTGA
CACTGTTGCAAATTTGTATATTATTCCACGAGATTGTCATGGTACTTCTA
CATCTGATCGAGATGACGTCATTCGGGAAGCTATTGTCACTGACGGATGT
CCCAATACTGACCACGTTTTCAAGGAAGAGTCTACCGCTGACAATGGAAA
GAAATTCCGATTTTCATTGAACGTATTCCGATTCAAAAACTCGAACGGTA
TGGTCTACATTCATTGCTCTGCTCACGTCTGTTTGGAAGGAAGTAATACC
ACAGAATGTCAATTCGGTTGTGAACAAAACAGCAGACGACGAAGACGTTC
AGTGGAGGAGAATGCATTGACACTAAATGATGATCTTTCCAAAGATTATG
ACATTCGAACTGGATTGATTATCGTAACAGAAAATTCTAAAAATGTCCCA
ATACTGACCACGTTTTCAAGGAAGAGTCTACCGCTGACAATGGAAAGAAA
TTCCGATTTTCATTGAACGTATTCCGATTCAAAAACTCGAACGGTATGGT
CTACATTCATTGCTCTGCTCACGTCTGTTTGGAAGGAAGTAATACCACAG
AATGTCAATTCGGTTGTGAACAAAACAGCAGACGACGAAGACGTTCAGTG
GAGGAGAATGCATTGACACTAAATGATGATCTTTCCAAAGATTATGACAT
TCGAACTGGATTGATTATCGTAACAGAAAATTCTAAAAATGACGACTCAT
TCCAACAAGACACCCAAGAATCACCCAACAATACTCAATTCTTTCAAACC
ACGACCAATATCATTCTCATTGCAATCATCTTGGTAATGTTGACTTTAGT
ATGTTCTCTCTTGGTTTTTGTTGGCTTACGTCGCCGTCGAAGTGGTTCAA
AAAGATATAGTGTCCCTGGATCTCCTTCGAAGATGGAAATGCATTAAATG
ACGACTCATTCCAACAAGACACCCAAGAATCACCCAACAATACTCAATTC
TTTCAAACCACGACCAATATCATTCTCATTGCAATCATCTTGGTAATGTT
GACTTTAGTATGTTCTCTCTTGGTTTTTGTTGGCTTACGTCGCCGTCGAA
GTGGTTCAAAAAGATATAGTGTCCCTGGATCTCCTTCGAAGATGGAAATG
CATTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000021_pilon | genome | sc0000021_pilon:376463..380502 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1009-1215:3834 |
| Aaloc | 709-1002:3276 |
| Aaloc | 493-705:2771 |
| Aaloc | 322-489:2265 |
| Aaloc | 88-321:427 |
| Aaloc | 10-84:1 |
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