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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000109_pilon:1056446..1060630+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_038078 ID=XLOC_038078|Name=XLOC_038078|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4185bp|location=Sequence derived from alignment at sc0000109_pilon:1056446..1060630+ (Clytia hemisphaerica_ch_hm2_pilon)
GAAGGAACATGGAGTCAACTTGGTTCATGTCAATGTAAGTCACCTTTACA
GTTAActatattgggctattccagaaatagtctttaccccctatgttgag
gaggtgtgacgtccagggtggtctggaaataaaataatccagggtggtcc
gtttttttgaatgaaaaaatccagtataaaataaggacaaaaatcaagag
tatggtaaaaaaagttgagagaaaaaaatccaagagggtcctgaaaaatc
ggaaaaaaatccagggagTCACCTTTGAAAgaaagacctcctcaacatag
gggatAAAATTTTGACTTGGAATAGCCCATTCCGGCTCATTTGAGAGAAG
ATTCTGTTAATCATTGTAAACTGTATCTATACGCTATCAAAGTGAGCttt
ttaacacccccttctcacccggtaggattttctcAGCTAGTGGGGGTAAt
agtaacggactgaaactcgatgggggttgatattcccatatttttccGTG
GCCGGGGgtttaaattcttttattttcaagtcaggaaatccagtggggat
gggagaaatagcataatattttgcagcgaggattggtttatttcattatt
ttcagtggCAATAAAAAtgggaggataattttccaccagggacgatactt
tggcaaatttttccagtggaaagtattcccagtgggtctgtgagaagggg
gtgttttttacAATctcaatttcaatatttttacaatcgcTTTACGTATT
CTACAAGGGCCCAAATCACTCCTATCGCAATATCACCAAAAGTTCTTTCT
GGTACACGCTGTATTGAAAGAGAAATTTTCTCGTATAAATAAGATATCTA
CCTTCCCTTGTTGTTTTCCCTTTTCACAGCGAGAGGACGATGCCAGTGGA
ATATGTATAGATGTAACAAAACAAGTCATGGTGGTGCTTATTGTTATTGT
ATACACACAGCAGGTATTAAGTACTTAATTTCTTCATCAAacttcccgtt
tcatatcagacacatatttcatatcaggacagcgCCTGCCTATTGTGAGT
GTAAACTTTTAGATTGGGGTCGTAGACTGAATCCCGgtttatttcataaa
aaatgaccaaaataagtatgaaatatttaatagttttcaaaataaagatt
aaGACCTTTTTATATCTTTCGGATTTTTCTTTCTCGAGATTAAATAAAAC
CGCATtctattggctcatttaagatTTCCGTCAAATTAAGAAtagttttc
atttgttttcaaatgtTAGATGAAACAGCAAAAGTGTAACGAAGTTTAAA
GCATTCCTGTGTATCATGTAGTATATAACTTTATAGTCAAGATTGTGGGG
GTGGCTATTATATATGTTTGAGAAGtgtttgttaaaattttttgatagta
tttatatgattttttctgataaaGAAAACAATGCTGAACTTCTATCCTTA
TCGTCATAAAGGGCCATCTACACCAGGGAAAGCAGTTTCTGATGACATCG
ATCGATGGAATGTTACAATCATTGGAATTACGTCAGCTCTGGTTTTCTTG
ATCATCATCGTTTGTGTTGGAATTATTGCATTGTTCTGCACCAAATATCG
ATCACGCAAACGACAAGACTCACAAAACACTGCAGAATCCAGGTACAAAA
CAATTCATGGCTAGCCAGCTCCTGGCCATCGTGCAGCGTTTCTATTGCCT
ATGGTCGGTTTTAAATAGGCCAGTTTCTCTAGCggcttttttaccaaaaa
tcgTGCGGAGCTCACTTTGCAGAAGCCCTTggaataattgttttttttgt
gcaaAATGATTAAATCCAATGCCACAGTGGTGCACCGCCAGGAAAATTAG
CATTATCGTAATTAACGCtagaaaatagagaaaaaaaaacaatgagctAA
GAATTGGTTTACCATTTCCTGTGTtgttttgagataaaaaaagacttaaa
ataaaaaCGTGTTGATTTACCCTAGTTCAAACTCTACGATATAAAAAATC
ATTATGGAAAGTAATTGCAAGGATATCGACCTCTGGTACTAAATTTATGA
CAAATGCAGCAATCGAGTTTAAGCTTACTGCAAGGTTGATAATCCCAGGA
AACTTCAAACGAGATTATTTTTATGATTCtcatgcaccattgcaatgtca
tCTGGAATTACCTCACGGACCCAATATCGGATGGTTGTAAGTGATGTAAA
GTCAGTCAAGACGtcaatttcaaccaatcagctgttgggtacCTGGAAGA
CATTGCgatggtgtatatcatgaattcgCGTCTGATTATTGATTCCAATT
ACTTTTATAGCATTTACGCTGACATTAACGAGCTGCAATTAAACTTGAAG
TACAACAACCAACGCTCATATTCGGCCAACAGTACTCACACCATCGGCTC
CACATGTAGTGGTTCCGCATTAAACAATGCTTATGAACCTACTCGTTTGG
CTCCAAGATCTTCATTGAGATCAACATCATCATCAGGTGAACCTTCGTTT
CATCCttaaacaagtttttttttatggtCATGACATTCAAAGGAACGTCC
ATTAATCGTCCAAACAATGTCGAAACGATGTTTTTGCTTGTACTCTGCTA
CAGAGGAAAGCAAAAATATCAATTTGAAATCTGCAGATtcttacaccccc
ttctcacagacccggtaggatttttttcagctaGTGGGGATATAAATACG
GACttaaactcgatggggattgatattcacaattttttatggctggggat
ttcaattcttttgttttcaagtcagaaaatttagtggggatgggaaaaat
agtaagtattttgcagcgaggattggtattttttattcttttcagtGGAG
CCAAAAATTGggggataattttccaccgggatgatattttggccaattgg
GAAGGGGTCTCAGTGGGTTTGTGAGTATTTTACACGTGTTAAGTATTGAA
TCATAGCAACCATTATATATTGTGGTTTTATTGATCCTAAGGCTTTAAGG
TCTCCGTGATAAACATACGTTTAACGTTAAATTCCTCAAAATATTAACCC
TCTTCTCATTCCCTTATTAGTTGCTAGTTCGTTATTTGCTGGTCCAGATC
ATCCTCAATTTCGTCGACGAAGTGACTTCGGAAGCTCAAGTATTACTTCA
CAAGAACTACCAGGACAAATGACACAATTTAAATTGAACTCCTTAACAAA
TAACATGGTAGGTTGATTAATTAGTCGCGAAAAATTAGTTacgaaaaatc
aaagaaattccTCCGCGAAAACTCCTCCTGGTGGTCGGTAGCAAAACGTT
AATAAGCCAACCCAAGCGTTTTGTGTGATAGTGTTATCAGGGCCTCTTTT
CTTGCCTGATGAAGTGGTTCGAATATTTTTGGCATGGTGACACGATTTAG
ATTTCGTGATGTGAGGAAgggcaaaaataattttaggcaTATAATGCGTG
TTTTGGACTATTGACCTTAAAACGAGAATAAATTTTATGATTTGCTTTTA
GCGCCGAATGAGTCGTACAAGTCAGCGTAGTAACCAACATTGCACGTCAC
TATGGTACACTAATCCAACTTTGAGCGGATCTCTTGAAAACATCACTGAA
TCATCGACACCAATATGCGGATCACCTCTAATGGAAGAAAATCCGTATAT
AGATATTTTTCCCGATTTGGTGAATCAAGAACCTGGTTCGGAAGATGACG
AGGATGATGAAACCGAAGATGATACCGATGATATGAATCATTACCGAAAG
TTCCCGAGAAATACTCAGCGATCAAAAACACAATATCAAAGACGAAATCG
TAGTGCGACGGTAATGCATAATACGCAGTTAACAGATCAAAAGTTGAACA
TTGACAGGTTGTATGATAAAACACTTAATCGCCAGCGCTCTCGATCTTTA
CCAGaatgtaaaataaaagagaacattgaaaaaaacttaAGTTTTAGTCC
TGAACTACCACCTTTCCAACCAAAGACATGTagcaagaaaaaacaaagac
tTTTTCCACGTATATCCTTTAAGATCAAGCTCAGAACTAGATCAAAAACA
ACTTCTTCACAGGAATGTAGAAAATGCTCATTCCCTGGGACAGTTGGATG
TCATTTGAAAATCAGTAATATATCAAACACAACTTCTGCTCCAAATATCA
ATGGACGTTTCCGAGCAGAGACGTTACcgtattga Coding sequence (CDS) from alignment at sc0000109_pilon:1056446..1060630+ >XLOC_038078 ID=XLOC_038078|Name=XLOC_038078|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2592bp|location=Sequence derived from alignment at sc0000109_pilon:1056446..1060630+ (Clytia hemisphaerica_ch_hm2_pilon)
GAAGGAACATGGAGTCAACTTGGTTCATGTCAATGAAGGAACATGGAGTC
AACTTGGTTCATGTCAATCGAGAGGACGATGCCAGTGGAATATGTATAGA
TGTAACAAAACAAGTCATGGTGGTGCTTATTGTTATTGTATACACACAGC
AGCGAGAGGACGATGCCAGTGGAATATGTATAGATGTAACAAAACAAGTC
ATGGTGGTGCTTATTGTTATTGTATACACACAGCAGGGCCATCTACACCA
GGGAAAGCAGTTTCTGATGACATCGATCGATGGAATGTTACAATCATTGG
AATTACGTCAGCTCTGGTTTTCTTGATCATCATCGTTTGTGTTGGAATTA
TTGCATTGTTCTGCACCAAATATCGATCACGCAAACGACAAGACTCACAA
AACACTGCAGAATCCAGGGCCATCTACACCAGGGAAAGCAGTTTCTGATG
ACATCGATCGATGGAATGTTACAATCATTGGAATTACGTCAGCTCTGGTT
TTCTTGATCATCATCGTTTGTGTTGGAATTATTGCATTGTTCTGCACCAA
ATATCGATCACGCAAACGACAAGACTCACAAAACACTGCAGAATCCAGCA
TTTACGCTGACATTAACGAGCTGCAATTAAACTTGAAGTACAACAACCAA
CGCTCATATTCGGCCAACAGTACTCACACCATCGGCTCCACATGTAGTGG
TTCCGCATTAAACAATGCTTATGAACCTACTCGTTTGGCTCCAAGATCTT
CATTGAGATCAACATCATCATCAGCATTTACGCTGACATTAACGAGCTGC
AATTAAACTTGAAGTACAACAACCAACGCTCATATTCGGCCAACAGTACT
CACACCATCGGCTCCACATGTAGTGGTTCCGCATTAAACAATGCTTATGA
ACCTACTCGTTTGGCTCCAAGATCTTCATTGAGATCAACATCATCATCAG
TTGCTAGTTCGTTATTTGCTGGTCCAGATCATCCTCAATTTCGTCGACGA
AGTGACTTCGGAAGCTCAAGTATTACTTCACAAGAACTACCAGGACAAAT
GACACAATTTAAATTGAACTCCTTAACAAATAACATGTTGCTAGTTCGTT
ATTTGCTGGTCCAGATCATCCTCAATTTCGTCGACGAAGTGACTTCGGAA
GCTCAAGTATTACTTCACAAGAACTACCAGGACAAATGACACAATTTAAA
TTGAACTCCTTAACAAATAACATGCGCCGAATGAGTCGTACAAGTCAGCG
TAGTAACCAACATTGCACGTCACTATGGTACACTAATCCAACTTTGAGCG
GATCTCTTGAAAACATCACTGAATCATCGACACCAATATGCGGATCACCT
CTAATGGAAGAAAATCCGTATATAGATATTTTTCCCGATTTGGTGAATCA
AGAACCTGGTTCGGAAGATGACGAGGATGATGAAACCGAAGATGATACCG
ATGATATGAATCATTACCGAAAGTTCCCGAGAAATACTCAGCGATCAAAA
ACACAATATCAAAGACGAAATCGTAGTGCGACGGTAATGCATAATACGCA
GTTAACAGATCAAAAGTTGAACATTGACAGGTTGTATGATAAAACACTTA
ATCGCCAGCGCTCTCGATCTTTACCAGaatgtaaaataaaagagaacatt
gaaaaaaacttaAGTTTTAGTCCTGAACTACCACCTTTCCAACCAAAGAC
ATGTagcaagaaaaaacaaagactTTTTCCACGTATATCCTTTAAGATCA
AGCTCAGAACTAGATCAAAAACAACTTCTTCACAGGAATGTAGAAAATGC
TCATTCCCTGGGACAGTTGGATGTCATTTGAAAATCAGTAATATATCAAA
CACAACTTCTGCTCCAAATATCAATGGACGTTTCCGAGCAGAGACGTTAC
cgtattgaCGCCGAATGAGTCGTACAAGTCAGCGTAGTAACCAACATTGC
ACGTCACTATGGTACACTAATCCAACTTTGAGCGGATCTCTTGAAAACAT
CACTGAATCATCGACACCAATATGCGGATCACCTCTAATGGAAGAAAATC
CGTATATAGATATTTTTCCCGATTTGGTGAATCAAGAACCTGGTTCGGAA
GATGACGAGGATGATGAAACCGAAGATGATACCGATGATATGAATCATTA
CCGAAAGTTCCCGAGAAATACTCAGCGATCAAAAACACAATATCAAAGAC
GAAATCGTAGTGCGACGGTAATGCATAATACGCAGTTAACAGATCAAAAG
TTGAACATTGACAGGTTGTATGATAAAACACTTAATCGCCAGCGCTCTCG
ATCTTTACCAGaatgtaaaataaaagagaacattgaaaaaaacttaAGTT
TTAGTCCTGAACTACCACCTTTCCAACCAAAGACATGTagcaagaaaaaa
caaagactTTTTCCACGTATATCCTTTAAGATCAAGCTCAGAACTAGATC
AAAAACAACTTCTTCACAGGAATGTAGAAAATGCTCATTCCCTGGGACAG
TTGGATGTCATTTGAAAATCAGTAATATATCAAACACAACTTCTGCTCCA
AATATCAATGGACGTTTCCGAGCAGAGACGTTACcgtattga
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000109_pilon | genome | sc0000109_pilon:1056446..1060630 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 613-1296:3502 |
| Aaloc | 478-612:3073 |
| Aaloc | 301-474:2312 |
| Aaloc | 121-297:1464 |
| Aaloc | 37-117:882 |
| Aaloc | 1-33:1 |
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