XLOC_038076 (mRNA) -

Overview
NameXLOC_038076
Unique NameXLOC_038076
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000109_pilon:1044095..1052356+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_038076 ID=XLOC_038076|Name=XLOC_038076|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=8262bp|location=Sequence derived from alignment at sc0000109_pilon:1044095..1052356+ (Clytia hemisphaerica_ch_hm2_pilon)
CCACCATTGAAAGTTGATCAAGCTGCATTACTCAAAGAAATGAAGTATAA TATTAACTTTAAGAAGAAAGTCAACGCGGATTTCAAGTTAGAAACTCTAC AAGGTGTTGGTAGATCCATCCATGTGAAGATCATCTATCAATGTTTCAAT GCGACTGGAGGTATGTTCTAAGATTAGAGAACTAAACACGTGCCTTACAC TTTGCCGAAATAAAACCAAATGTTTATCCAATGATTAAATGTCAAATGAT TACGTTCAAAATATTCATTAATATCTTCGGACGGGGTTTCCAACAAGTGG GAATGGACAGGATGCTAGGGGACAGGtttttttACCGTCAGTAGTTTTAC TGTCCTCGACTTTGTGgttcagaactgcgggttattccaaatcgcttcag tcactccacTGTCCTCAAAATGCAAAACATAAACTCGCGTGGtcttcgtg atggcgtgattggtgttttttcaagttcgtgattACGTGATCtaagattt aaagttcgagattgcgtgatcggaggaaccaacgtgatcaacgtgatcgt gatagaaaggaaATCTAAATCGCGATAACGTAAGgtgactgggggggggg gcttttctatgcaagtaaataaaatttcttagaTAGCCACTTCAAAATAC AGTGGATTTTCATTACCTTGAaacttctataactcgaatatttTATTAAA TAGAACAAGTTTTAGGTCTCctcagttaacaatgctttatAAACCTCTCT ATATGACTCGAAACTTCCTTAACtaaaacaagaagccggagcggcatgaa ggtccagctgacgtgacAATAgccgaatgtcgttcgtaccgggttcctta agtgacgcaaaaaaattgccttcccatcctccactctgagcttctattct ttgacactttttttgtattgctaagtttagaaagtttttgatgcatttcc cgaaatttcgaaacttttgtgGCTGATGGGAGTCGAACCCACCATATCAA AGTAACTATgattagaacgccagcgccttaaccactcgatcatcgagtca caactgcattaaggagttcaaagttgcttaaaaacatgatatttactcca aactctacccgggggctaaaaccctaaccaggggttaactcccatctcaa accctagccctaaccctacctgaaacaaccctttaatctaaccgggaaat ttgactctactaccaattcaatccaaaacataggtcaaacatcgcgcggg taggcgggccaaaaattctagatcggcggttggtttagcctggacttgtt aatctATTGCGCGCACGggcccgacaaagacaaaatcttttcgatcagtt gctttttaaaggtccattctgctgcgcgctggaccaacaaattgcttttt ccccgtgcgtgttcgagttgtGATTTTCCCACTAAAACCATCCCTCGTAA TGGACACGATAGGGTCTCCTACCTATTGAAGGTATCGACAAAAATCTTCC TCGGGAGTGAAATCttcagaaatttgattttattttctaaaagtttactc ttaggttccaaataaacgggggggggggggggggttcgataaacgggggg gggttggaaaatttcagattttaataaacgggggagacctaattgccggg gggggtggaaatttacttctgaaacccaaaaataaggtaaaaataggcta aaactacgctatttaaagcaaaataagggaccttctctttgacgctgaaa atatttttctaacgggggggTCCTATAGGTCCGGGGGtggttgaaaattt tcgaaaaattaacaagcgggggggcccgtttatttggaacctaagagtag tgaTTTAAGTTAAGTCCCCAACCATTAAAGAGGGCAATTTCTTTACCTTA TTGGTATTCGGccctttttcatcattttagcgaccgtagtgcagtggtag cgcatccggctacggtgctcAAAGACGTGGGTCTACTCCTCGGCCGGGCC ATACGCAAGACTTTGTACTTAAATACAATAATGGTACTTGGTgcttctct gcttgatgctcagcaattaagagaaagaCCAAGGTGGAGCAGTCCAGGGT GAAAGAGTGGGTAGATAGGCTATTGAAAGAGGAGTCTTCGGGTCGCCTCT GACTGCGATCGCAGACttacatacagttgacgctctcttattcgacgttc tactattcgatacgctccattattcgataatattgataGTCATAGCCAAC AAGAAacactcataaacgacgctctactattcgatacactcccttattcg atggaaactcgattccccttgaaaataaGCGTCAACTATAATTTCAACTA TATTTCATCTCCACTATTACCATATTACTATATGAGATGACTTTTACATT GCTTCCCTTACAGGTAGTCAAGCACAATGTGAGGAAGAAAAATTCGAAAC TTTCTTACAAGGGGTCTATCAAGAAGGATGTCAATGTATGACTGTCCCCT CAAACGAAGATGATTGGAACAAAGAGATTTGCTCAGGTTTGGAAATATCC TGCTTACTTCCGCAGTAGTGGATGTAAGGGGGATGCAAAATTCACGACGA AAAGTGTTTCTTTTTTACGTGTACTGTACATGTACGTGCAAAGTTTAAGT GTAGGGAAATATTGAGCTTTCAAAGTTTTCTCTCCGGTGGCactaaagaa aaattgatttaatttttaaacTAAACTAGACATTTAGAGTCTACTACAAT CTCCTTTTCCTATTTAGGTGCTGAATATTTTGGCTGTTCAAATGCATCTT TACAACAAGAAGCTATACGGGTCAACCTGACCACTTTTTTATCTCCCAAA GTTTGCATTCGTGTCTGTCAAACAATGGGTTACGCTGAAGCCGTAATTGG CGGAGATAATGGGTGTTATTGTCAAAACTCAGGCTTGGAACTCGAGAGAT CATACGTCTctgaagaaaaatgttttagtGCTTGTAGATACGAACCGGAC TTTAGTTGTGGGAACAGTTCCTACAAGCATTTATATACAACAGGTACATA AATTATTCCTTTTAACACATAACGTCGGTTGAACGTTGTCTTAAGGTTCA TCTTCAAACATCAGATGGACGTTGAAAAACGCTATGTACCTGTAGGAATT CCAGAAGCTATCTTTTATACCAAAACACCCATATATATGCCACTAGTTTC ATAGTTTCATAGTTTCATATTAACATGAAAATAGGCATAATACCTAATAC GTTAATATTTGGGATAAAGGTTGAACCAATTAATAGGGTGCTCTTTTCGA GACACACAtatgtcaaaaattttgttttattacacccctgtcccacagcc ccagtggaacttttttccgcggtagggataaaaattcctattgaaatccc aattggGAATGGTtctggagtacaatttttaaacattgaatttcgagtgg ggatgaaatcatagtcaatttcccaatggggctgaaattccaaggTATAT TCATCTCGCCGGAGACgtaatttttaccaaattttccagtggggccgagg ttccagcgggtctgtgacacaggggtgttttattaGTAAACAGCTGACAT TCTGTTTGAATTAtagtagtagtaaaaatagtaaaatagtaaaaaaatct GATTGTCAGGTATGATGGGACCATTGGAATCATCAGATGGACTTTGTTCA AAGAGCGCATGCGTCAATGGAACATATTGCGTTCGAATGTTCGATACAGA ATTTTGTGTTTGCAATCAAACATCAAGTGCAAAGCCTGAAGAGTGTTATG GTAAGAAATTATTTACGCACGTAATAGTATGAGACAACATGAGATGTCGA CAGTTTTCAAAAAGCTTCTATCAAGAAGGGTTAATTTCATCACATAGACt atatgctatagtctaagacaaatcactatctaagaaataagctcaaagcc gaagaaaatttgccaacgggttttttgccgaaaagagtttacaatcggaa gagtttgccagtcttcgaaactctcccacCGATTTTTTCTCCGTATACTG ctataacgccataccgccatatttttccgcctttactatcactgtaacgg acgataagcTGAGATGAAAAATTTTGTGCATAGAAATTCGAGCTCGCAAC CAATGACGCTATACTATTGTTTCGCAAAAGTTGGCAAAGAGTTGGCCGTC TAAGGTCAAACATAGACAGCCCACTTTGTGCCCACTTTATGCCAACTCTA GCAATTAGAATAGGTAGGGCTAAAAGTGGGCCGACTAAACCAGAGCTAAC ATCGTCTATTCATCACCGTGATCTCAGACATGAAAGCAAGTCCCCTCTTC TTTAAGGTTGAAAATAGGGAAGTAAGTTGGGAttaacaaaatatgaaatg TTTTCCAATGGAAATTTAGTTAGTCTTagacctatttttccagtggaaag ggaGTTTCATCGGAGCTGTGATGAAGGAATGTTCGAAAAATCATTAATCC ATATAATGGAACTTATGAAGGAAAATATAGTAAACTTTTCTCCTTGCGAC CTTCAGGTTGCTTAAATGGATGGACAGCTATCATTGGACAACCAAATTGT TACTTCATCACCGATCTGCAACCTCTCCTCAAGTACCAACTACAGCAATA CTGTCAATCGATTTACGGGCGGGTCGCAGTACCTCATGATTTTCAAGCTG TTACTCAATTCATGCGTCtcatattgaaaaattttgtggaGAATCGTTCA CATCATCAAATTGAAGCAGATATTAAAGAGATAATTAAAAATGGAGACGA CTTTTTAGCGAGAGGTTTTCCACTTTGTGAAAGACCCAAAAGTAAGTGTT TGCAAGTAAAGTATCAGCAAGGGACCTTGCGTCTTTATATTCTACACCTT TTAGCTTACAAAGGGTCCTTAAATTCAACACAAAAAGGGAAAATTATCAA AaggccccaggggggggggtcactcaTATGGTCtgacccacggcatgtgc cgcccttaagagTAGGTTTTTCGAGATCCTCAAAATGCacgggtgtactt ttgatattttatttattttccaatttatttattGTTGGTCTGCCATAGTA ATAATAAAATACTAATTAATACCAACCGTAGAGAATAAACTAATTATATA ATGAAGAATataagataaaaattttttttttatatacatattttacaaag acaaatatttGTGAGGCTTATTTCTTTCAGTGAGGATTTAAAAGTTTCGA TAGAGGATTCAAGCTTGATTTTTTCAGGGATCTGATTCCAAAGCAGGCTT CCTCGAAATAAGAAAGATTGAGTTCCGTAACGTTGTGAATTAGCCTTAGG TATAGACATTAAAACTTTGTTTCGGAAGTTGAATTTTATAGATTGATAGA GCGCACTACAAGGGTCTTATTTCAGCTAGATATACTGTAATAGTgtgttt tgggaatttttaCTGAATTCTACTGAAAATAAGTCTGACAGttaaaatct gatgtatctttatagttttgactcatACCCAATCttatttgttttgcaca ttgtgtcgacattactggctcattttcaggtggcttcagcaaaataagat atgaaatcaaagcaCACTGTAAGAGTCAGAAAcattcggtaaaatgcact gtaagatACCTTTTCACTACTCaagagctgcactgtaagggtccgatttc gaaagccgtttttttagctgcacatgccgtcgttaagaaatcgagtgccc cccctcCCCGGGCAAAAGGCTCAGTCAGTCAATTATTTGGTCGTATAGTT TCTTAAGATTCCCTTTGATTTCTACGATTTGTTCGTTATAGGTTCAACGT TACTAGTTCAATCTGGGCCTCAATTTTTACGTGATTCAAATAATTTCTCA CGGTGTCAAGGTTGTATGTAAAATTATGACTTATTGTGTTCGACTTTCGC CTACGTCAttagagaaaaaaggaaaaagttttAATGAAAACTAGACTTTT CGTCGGAGATTAGTAACAAAAATATACGAATAAACCACAAAACGAACGCG TTATCCTCGTGGGACTAATCCATGTGGATAAGAATTTCTTGTTAACTAAC AGTTTAACTAAAAGACATAAAAGGAAATTTTGGGAATTAGTCTCAAAAAG CTTCTTTTCCTAGAAAAAGAGAAACGAAAGCACGGGGAGGGGTGGTTTAT TCCTGATCTTACCTATCAATTCCTAGTAACCTCCTtttaacccggggggg ggggagcttAGGAAAAAATGGGTGTtgagtatgtgcggacggtaaaggtc gttttttcacctttcaaagtctctttaagggtcggaaaaatcagaaagtt ttaaattagcctattaagggtcggaaaattcacaatgtttaggaattttt tggtttcgagagaaaaaattgtaaaaaagtctctctaaggataggatttg tttttaaaatataagcaaatttttcaaaaaagtctccctaagggtcacct tttcggcaaaaatcagtctctctaagggtcggtttttggaggtcctgTCC GATCCggacatacccctcattcgccaaccctagtaccccccccccgtaaT TCACTAATAGTGAGCTTTTTTATCTATTCTTTTGGGTGGTAAAGACGTGC CAAAAAACGGTTTGGAAAACCCAAAGTTGACCCGCAAAAGTTGATTTACA GTCAGCCAGGATCTAACCAATTGAAAGCCTAGCTGTTTCATCCACCGTAG AAAAAACATCATAGATAAACTGGATGTTTGAATTTCTCCATAGCTGAAGT TACTGGTAGATACCCGTGGACTAAATGGCCTAAAGGCACTTATGGTTTGC CAATGTCCCGCACAGGCTGCCCTGTACAAAACCATTTCGAATGGAGAGCA GGTTCATATGTACAGAATACAGAGAACGATAGCAACGCAAACGAAGCATC ACATGACCTTCATCTCCATGGCAATGTAAATAAAGGTAGTGAGATCTTTC GATTTGTTGATCTAAATATTCTTTAGGTTAATAAGTaaaaaCATGACAGA TTACCTGGCGTGTATCCAAAGCTTTATCTTAATTTTACTGATGAACGTAA TAGTGAACGACGACCAAACCGAAAAAAAACGCACAAACTAGGTTTGATGA AGGATATACATTTTTGACGGGGGTGTATCATTATCGTGGAAAAATCTAGT AAAAAAAGTAAATTCTTTATTTTAATGTTCAGTTTCACGGAATAAATATT CGATACATCTAAAGCCTGGGGAACTGCAGCGTAGACTAAAAATAATTATA TACACTGCTTCATATCTTTACATTTATCCATTCCATAGGCAACATCACAA GTCATTATTGCATCAAGACGGATCCAGTAGGAAATACGTCCTGGCCTGAT GGGCGGTATTGTATCTACCGTAAAGGCGGTAAATGTCCGGATAATATGGT GTCTAGTGCGATCTTTTGGGATGATGAAGATACAAACAATAGAAATAAAG GTACTTAAGAGTTGAGAAAGTATCGTTTGTaaactttttggagaatatct tattggccaaaacttagtcgaccttaattttagtcagtcttaattattag tcggccctaattttagtcaccttgtcaaaatttagtcactaagggcagcc taataattaagaccgactaaaaattatatattcgtaaattctttgttaaa gcAAAACCAATATGAAAAATGGGTTAAGGAAAGctaaattataaactttt aattggcccaaatttttagtcggcccaaattttagtcaccaagcccaaat ttagtcactaagttttggccgataaggtaagcagaaaaaaagaagtgaat tttgactgggtgaattttttcttttacataaAATAGGTGTAATGAGGAAA TATCAGTGctgttatttttgaaaataacagaAAACTTAAATTCGGGGGAA AGCTTGGTGAGaacctttttggaaatttttaacaGGCTCGCTAAATTCTC CAAGataaattttcatcaaagaaTTTAGCGGATGGTATAAAACAAAAAGT CCCCAGAAGGCAAAATCTTTAGCTTAAAAAAGCTCGTCTAGAACAAGAGC AATAAACATATTCCCACTTTCAACGTGTGCATATTCTAACAATTTCATCC AACATCCAatctaaaattatatttctccTCAGCGGACGGCGTGCATCCAG ACGGTATGTTCAAAGCAGACACCATCATTCAATTTTGTTGCATGGATAGA CCGTTGAATAAG

Coding sequence (CDS) from alignment at sc0000109_pilon:1044095..1052356+

>XLOC_038076 ID=XLOC_038076|Name=XLOC_038076|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2838bp|location=Sequence derived from alignment at sc0000109_pilon:1044095..1052356+ (Clytia hemisphaerica_ch_hm2_pilon)
CCACCATTGAAAGTTGATCAAGCTGCATTACTCAAAGAAATGAAGTATAA
TATTAACTTTAAGAAGAAAGTCAACGCGGATTTCAAGTTAGAAACTCTAC
AAGGTGTTGGTAGATCCATCCATGTGAAGATCATCTATCAATGTTTCAAT
GCGACTGGAGCCACCATTGAAAGTTGATCAAGCTGCATTACTCAAAGAAA
TGAAGTATAATATTAACTTTAAGAAGAAAGTCAACGCGGATTTCAAGTTA
GAAACTCTACAAGGTGTTGGTAGATCCATCCATGTGAAGATCATCTATCA
ATGTTTCAATGCGACTGGAGGTAGTCAAGCACAATGTGAGGAAGAAAAAT
TCGAAACTTTCTTACAAGGGGTCTATCAAGAAGGATGTCAATGTATGACT
GTCCCCTCAAACGAAGATGATTGGAACAAAGAGATTTGCTCAGGTAGTCA
AGCACAATGTGAGGAAGAAAAATTCGAAACTTTCTTACAAGGGGTCTATC
AAGAAGGATGTCAATGTATGACTGTCCCCTCAAACGAAGATGATTGGAAC
AAAGAGATTTGCTCAGGTGCTGAATATTTTGGCTGTTCAAATGCATCTTT
ACAACAAGAAGCTATACGGGTCAACCTGACCACTTTTTTATCTCCCAAAG
TTTGCATTCGTGTCTGTCAAACAATGGGTTACGCTGAAGCCGTAATTGGC
GGAGATAATGGGTGTTATTGTCAAAACTCAGGCTTGGAACTCGAGAGATC
ATACGTCTctgaagaaaaatgttttagtGCTTGTAGATACGAACCGGACT
TTAGTTGTGGGAACAGTTCCTACAAGCATTTATATACAACAGGTGCTGAA
TATTTTGGCTGTTCAAATGCATCTTTACAACAAGAAGCTATACGGGTCAA
CCTGACCACTTTTTTATCTCCCAAAGTTTGCATTCGTGTCTGTCAAACAA
TGGGTTACGCTGAAGCCGTAATTGGCGGAGATAATGGGTGTTATTGTCAA
AACTCAGGCTTGGAACTCGAGAGATCATACGTCTctgaagaaaaatgttt
tagtGCTTGTAGATACGAACCGGACTTTAGTTGTGGGAACAGTTCCTACA
AGCATTTATATACAACAGGTATGATGGGACCATTGGAATCATCAGATGGA
CTTTGTTCAAAGAGCGCATGCGTCAATGGAACATATTGCGTTCGAATGTT
CGATACAGAATTTTGTGTTTGCAATCAAACATCAAGTGCAAAGCCTGAAG
AGTGTTATGGTATGATGGGACCATTGGAATCATCAGATGGACTTTGTTCA
AAGAGCGCATGCGTCAATGGAACATATTGCGTTCGAATGTTCGATACAGA
ATTTTGTGTTTGCAATCAAACATCAAGTGCAAAGCCTGAAGAGTGTTATG
GTTGCTTAAATGGATGGACAGCTATCATTGGACAACCAAATTGTTACTTC
ATCACCGATCTGCAACCTCTCCTCAAGTACCAACTACAGCAATACTGTCA
ATCGATTTACGGGCGGGTCGCAGTACCTCATGATTTTCAAGCTGTTACTC
AATTCATGCGTCtcatattgaaaaattttgtggaGAATCGTTCACATCAT
CAAATTGAAGCAGATATTAAAGAGATAATTAAAAATGGAGACGACTTTTT
AGCGAGAGGTTTTCCACTTTGTGAAAGACCCAAAAGTTGCTTAAATGGAT
GGACAGCTATCATTGGACAACCAAATTGTTACTTCATCACCGATCTGCAA
CCTCTCCTCAAGTACCAACTACAGCAATACTGTCAATCGATTTACGGGCG
GGTCGCAGTACCTCATGATTTTCAAGCTGTTACTCAATTCATGCGTCtca
tattgaaaaattttgtggaGAATCGTTCACATCATCAAATTGAAGCAGAT
ATTAAAGAGATAATTAAAAATGGAGACGACTTTTTAGCGAGAGGTTTTCC
ACTTTGTGAAAGACCCAAAACTGAAGTTACTGGTAGATACCCGTGGACTA
AATGGCCTAAAGGCACTTATGGTTTGCCAATGTCCCGCACAGGCTGCCCT
GTACAAAACCATTTCGAATGGAGAGCAGGTTCATATGTACAGAATACAGA
GAACGATAGCAACGCAAACGAAGCATCACATGACCTTCATCTCCATGGCA
ATGTAAATAAAGCTGAAGTTACTGGTAGATACCCGTGGACTAAATGGCCT
AAAGGCACTTATGGTTTGCCAATGTCCCGCACAGGCTGCCCTGTACAAAA
CCATTTCGAATGGAGAGCAGGTTCATATGTACAGAATACAGAGAACGATA
GCAACGCAAACGAAGCATCACATGACCTTCATCTCCATGGCAATGTAAAT
AAAGGCAACATCACAAGTCATTATTGCATCAAGACGGATCCAGTAGGAAA
TACGTCCTGGCCTGATGGGCGGTATTGTATCTACCGTAAAGGCGGTAAAT
GTCCGGATAATATGGTGTCTAGTGCGATCTTTTGGGATGATGAAGATACA
AACAATAGAAATAAAGGCAACATCACAAGTCATTATTGCATCAAGACGGA
TCCAGTAGGAAATACGTCCTGGCCTGATGGGCGGTATTGTATCTACCGTA
AAGGCGGTAAATGTCCGGATAATATGGTGTCTAGTGCGATCTTTTGGGAT
GATGAAGATACAAACAATAGAAATAAAGCGGACGGCGTGCATCCAGACGG
TATGTTCAAAGCAGACACCATCATTCAATTTTGTTGCATGGATAGACCGT
TGAATAAGCGGACGGCGTGCATCCAGACGGTATGTTCAAAGCAGACACCA
TCATTCAATTTTGTTGCATGGATAGACCGTTGAATAAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_038076XLOC_038076-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000109_pilongenomesc0000109_pilon:1044095..1052356 +
Properties
Property NameValue
Aaloc1342-1419:8185
Aaloc1180-1338:7341
Aaloc988-1176:6796
Aaloc703-984:4559
Aaloc562-699:3662
Aaloc286-558:2770
Aaloc163-282:2416
Aaloc1-159:1