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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000379_pilon:170868..174022+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_038053 ID=XLOC_038053|Name=XLOC_038053|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3155bp|location=Sequence derived from alignment at sc0000379_pilon:170868..174022+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGGTGAAGTTAGTGTGGAAAGACCTCCAGGTAAGAAAGCATTATTTAC
TTTAATTCCAAAAAGTCAAAAGCAGCTAGAATTAACTAACAACAATTGAA
AAGTACACTGTTTTGAACCTACTGTTTTTGACAAAGCTGATTTAACTTAT
TATCAGTACAATATTTACTGGACATCTTTCTCTTCCTTTAGtgcacaaat
ttacaaaaacagcTGAAAGGGAAGCCATTGAGAGAAGAAGGTTGGTCTTT
TTGATTGATGTTACGGTATTGTGTCATGATTATTTCTTTTCTGACAACTG
CAGTTAGCTTTTAATATATCtctttaattatttttagtagGTTAATGTTG
AGGTTATAGATTGAATTATCCCAAGGATCAAAAAccatctttttcaaaac
ttttaggCAGAGGTTCTCTCAACTAGCTAcaccaaaaacatcaaaaacta
TTTGGGCAACTGTCGAGTAAGTATATCAACAGAAATGTtttcgttttctc
tttttttagtgCTGTCGCAACTAAtacatcaaatttgaaaaaacttattA
TGCACTGCTCTTAAAGAAGAGGTGTCTGTTAGATTTGAGAAGACTTTCAC
AACTCTCAGAATTAGTCGTCTTGACGTTACAATTGCaaaatagatttcaa
aaataaggttaattttctttttagtatTGACTATATTAAAGCCTGTATTG
ACTTTATTACATTCGTTACATTTAATTACAttacaaaaataataatgatT
GCATTTgattcaaaaatcttattttaaagGCCTCCACTGACATGGGGCAA
CCAAGATCCAATGAGGCCCATAAGCACAGCTGCATTGAATACAAACGCAA
GTGAACGTTTGTCTGCTCTTGCTACACCAAAGAAGAATTTCCAATTCGAT
CACCCACAGAAATGTAGTCGGTATGGTATTGTTTGTATATTCTGTTTTCT
TACCATTTTAGTCACACAGgggaaacattttattttttaatgacttttta
ttgtaaaattttcacCGTGGTTGTTCAACAATcggaaaagttttttcttt
tagctCAAAAATCGACGCATtgagaggaaaaaatctttgatGATAATTTT
AAATGATTACTCTTTGCTGACAAAAGTTATCATTCATTTCTaagaatttc
gttttttttcagccattgTTTTGTTTACTCTGCTGGTCGCTCATCTGTCA
TTTGGGATGTCAGTCCACTGGCTATGAAATCGAACCCCAGTGAAAGAATT
GAAGAACTTTCGAAACCAAAGAAATTAACAATGGGTTATTCAGAAGATAG
GTAAGTGTAAGATGACACTTTTTCCTTTATCAAGGCAGTCTTTATATATA
ATCGAATTTCCTAGATTCCATTTATTGTTGCCGAGTTTAATTTTGGCAca
tctttttttatcaattgATACTTATTTCTTATTTAGGACAAGAATCCAAC
AAAAGTGATTTTAAAGTAATGCTCTAAATGAGTTTCATTTCCGTCTCTTA
GTTTAAAGAGTTCCGCCTCGAACTTGGgcaaaaaatcaataaagtatcat
aagtatcaagaatcttgttttttttttttgtgaaaagtctgATTTCTTTC
TGAGAAGAAAAACCCTTCTGATAAATTAAATTAATGACATTCCATATCAT
TTCCTATCGTAGGTCAAGTTACGTTCTTGGTTGTGGGCGATCCTCTCCCA
TTTGGGGTATCACTTCATCAGCAAAGAAAGCTGCCCTCAGTGATCGAGTA
GAAGCTTTATCACACCCAAAGATTGCGCATAAAGAATATCAACCTCCTCG
TGGtgtaagtcattaaaataatttttcatgttgttttcttgaatatttta
aatCGGTGCTTTTTTCAACCTTTATGCTCAATGTTGAGGAAACCTACATT
TCCAGATTTTGATTTGCACGTTCCATTTCTGTTTCAACGGTTCATCATAG
TCTAAATTTACAATTGACTTAGGAGGTTTTCACTACTTTTATCATCAACA
ATATGGAGCTTATAGCTTCTTTgattaaaatattctttctcTTAGGTTCA
ATGGCCAGTTTCCCAAAGTGCTAAAAGTGGAACCTTTCCGGATCACATCG
AGACTTTGTCAAGACCCAAAGAACGTAATGACGGTGCCCATAGAGATTCT
GTATGGAAAGTCAGCAAAGGTGCTAGAAGTACTCAAGCCTCCTCGCGTGT
TCAGGTATTTTTCGTTCGTTTTGGTTGTCAGTCAATGACAAGCCTAGAAA
TCCATGtaatgatttcttcttttatatactgttggcgaaatgaatagcat
ggtttTGACTATGAGTTTGAATTTCACATCTCCAAACGACAGtcgaaaac
acagccaatcaaattttgctactctttcactggtcacactttcttagaaa
aaaaaacaagtttctAAACTTGCTTTAACTATCTAATAAGTCAGAATAgt
gctaaattcgaatttcctaatgtaaatttttgaagcgaaaatctgcctca
caggtcaAACTCGTCTTGTATttatatcagattataaaaatacaggaagG
GTCTCTTGTCTATGAGAAACCTTGATAGCATTAACAATACTCGAAATACC
TCACATAGAAATTGGtattttcaaccatttttgcaCGTACAGAAAGCTTA
TGCTTATTAGTTAGATTTTGAATTAAATAATACTAAACAGTTTATGCGAC
TCTTATAATTAATCCAAGCATCCCCTGATTAGTAGGTCAAAAATTGAATC
TAACCTAAGGGCATACTTTGTATCCTCGTTTTGAAGACTTAGGAAAACTT
cctaaaaaaatttacaagctCAGCGTATGCGGTGTgtaccttttttttca
aaataaagcaaaaattatcaagaacaaaaaatttcattttgcgATAGGAA
TTAGCGCAGCCCAAGAAATATACTGACGGTTATCAACCAAATCGCGAGGG
AGAATCGAGAGTGGCTCGATCAGCGTTAAGGGCTGCTGCAACCGAGCGTT
TAAAAGAACTTTCTAACCCAATCATCCGAGACACTATGGATCATGTACAA
TTTGATCCCCTGGCTTTCCAAGTCAAAGAAACTGCACTGAAAGGCAGAGT
TCCTGATCGAATCCATGACCTTGCTATTCCTGTTATTCGAGGTcccaaaa
attag Coding sequence (CDS) from alignment at sc0000379_pilon:170868..174022+ >XLOC_038053 ID=XLOC_038053|Name=XLOC_038053|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1956bp|location=Sequence derived from alignment at sc0000379_pilon:170868..174022+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGGTGAAGTTAGTGTGGAAAGACCTCCAGATGGGTGAAGTTAGTGTGG
AAAGACCTCCAGtgcacaaatttacaaaaacagcTGAAAGGGAAGCCATT
GAGAGAAGAAGtgcacaaatttacaaaaacagcTGAAAGGGAAGCCATTG
AGAGAAGAAGgCAGAGGTTCTCTCAACTAGCTAcaccaaaaacatcaaaa
actaTTTGGGCAACTGTCGAgCAGAGGTTCTCTCAACTAGCTAcaccaaa
aacatcaaaaactaTTTGGGCAACTGTCGAGCCTCCACTGACATGGGGCA
ACCAAGATCCAATGAGGCCCATAAGCACAGCTGCATTGAATACAAACGCA
AGTGAACGTTTGTCTGCTCTTGCTACACCAAAGAAGAATTTCCAATTCGA
TCACCCACAGAAATGTAGTCGGCCTCCACTGACATGGGGCAACCAAGATC
CAATGAGGCCCATAAGCACAGCTGCATTGAATACAAACGCAAGTGAACGT
TTGTCTGCTCTTGCTACACCAAAGAAGAATTTCCAATTCGATCACCCACA
GAAATGTAGTCGccattgTTTTGTTTACTCTGCTGGTCGCTCATCTGTCA
TTTGGGATGTCAGTCCACTGGCTATGAAATCGAACCCCAGTGAAAGAATT
GAAGAACTTTCGAAACCAAAGAAATTAACAATGGGTTATTCAGAAGATAG
ccattgTTTTGTTTACTCTGCTGGTCGCTCATCTGTCATTTGGGATGTCA
GTCCACTGGCTATGAAATCGAACCCCAGTGAAAGAATTGAAGAACTTTCG
AAACCAAAGAAATTAACAATGGGTTATTCAGAAGATAGGTCAAGTTACGT
TCTTGGTTGTGGGCGATCCTCTCCCATTTGGGGTATCACTTCATCAGCAA
AGAAAGCTGCCCTCAGTGATCGAGTAGAAGCTTTATCACACCCAAAGATT
GCGCATAAAGAATATCAACCTCCTCGTGGtGTCAAGTTACGTTCTTGGTT
GTGGGCGATCCTCTCCCATTTGGGGTATCACTTCATCAGCAAAGAAAGCT
GCCCTCAGTGATCGAGTAGAAGCTTTATCACACCCAAAGATTGCGCATAA
AGAATATCAACCTCCTCGTGGtGTTCAATGGCCAGTTTCCCAAAGTGCTA
AAAGTGGAACCTTTCCGGATCACATCGAGACTTTGTCAAGACCCAAAGAA
CGTAATGACGGTGCCCATAGAGATTCTGTATGGAAAGTCAGCAAAGGTGC
TAGAAGTACTCAAGCCTCCTCGCGTGTTCAGGTTCAATGGCCAGTTTCCC
AAAGTGCTAAAAGTGGAACCTTTCCGGATCACATCGAGACTTTGTCAAGA
CCCAAAGAACGTAATGACGGTGCCCATAGAGATTCTGTATGGAAAGTCAG
CAAAGGTGCTAGAAGTACTCAAGCCTCCTCGCGTGTTCAGGAATTAGCGC
AGCCCAAGAAATATACTGACGGTTATCAACCAAATCGCGAGGGAGAATCG
AGAGTGGCTCGATCAGCGTTAAGGGCTGCTGCAACCGAGCGTTTAAAAGA
ACTTTCTAACCCAATCATCCGAGACACTATGGATCATGTACAATTTGATC
CCCTGGCTTTCCAAGTCAAAGAAACTGCACTGAAAGGCAGAGTTCCTGAT
CGAATCCATGACCTTGCTATTCCTGTTATTCGAGGTcccaaaaattagGA
ATTAGCGCAGCCCAAGAAATATACTGACGGTTATCAACCAAATCGCGAGG
GAGAATCGAGAGTGGCTCGATCAGCGTTAAGGGCTGCTGCAACCGAGCGT
TTAAAAGAACTTTCTAACCCAATCATCCGAGACACTATGGATCATGTACA
ATTTGATCCCCTGGCTTTCCAAGTCAAAGAAACTGCACTGAAAGGCAGAG
TTCCTGATCGAATCCATGACCTTGCTATTCCTGTTATTCGAGGTcccaaa
aattag
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000379_pilon | genome | sc0000379_pilon:170868..174022 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 721-978:2898 |
| Aaloc | 562-720:2046 |
| Aaloc | 421-561:1664 |
| Aaloc | 283-417:1164 |
| Aaloc | 142-279:781 |
| Aaloc | 82-138:408 |
| Aaloc | 34-78:194 |
| Aaloc | 1-30:1 |
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