XLOC_037999 (mRNA) -

Overview
NameXLOC_037999
Unique NameXLOC_037999
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000277_pilon:96603..104224+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_037999 ID=XLOC_037999|Name=XLOC_037999|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7622bp|location=Sequence derived from alignment at sc0000277_pilon:96603..104224+ (Clytia hemisphaerica_ch_hm2_pilon)
atgagaaattacATAGACAGAATTTTACTGAAAATCAACGAAGGGCGTGA CCCTGCTGCATTGGGTGTTCTTCGATTTTGCTATGGTAAGTGATTATTGT TTTCCATTCTTGTTTAAACCGATGTGATACTTTTTTCTAGGAAATATTCA AAACGAATTCGTCAAAGATGGTTGATATTTCTGAACTTTGATCAAATGAT TAAgaattattgttttaaaaatggaatagatttttcaaagcgattctttt aaaactatatcgaatttttattttccgtTTTCGAAGAGATgcttaaaatt tccatttttcccAAATGACCAGTTTTGGTGATCACTTTCACCTACCGAAC GTTCtttttttGTTCCAGGACTTTTAATGATTATCGACATTTTTGACGAA CGTGGTTTGTCTCGATTACCCATCAAGCATGGCGACCCTTCATCCTGCTA CTTCCCGCTATTCGATAATATGCCTCGATTATCAATCGAATATTTATACT TAGTATATCTggttttgctgatgtcagcatttggGATAATGATTGGGATG TTCTTCAAGTTgtcttgtttttgtttcatgTCTTGTTATTGGTACATCTT TTTCCTGGATAAAACTGTTTGGAATAATCATTCATATTTGTATGGATTGA TATCCATCATTTTGTTGCTAAGCAACGCTAATTATTATTGGTAAGGCTCA CATAATGAGAATTGAGTTTACCATCCCAGCCATGCGGACAGCGTTTTGCT TTCAAAACTCGCTGGCAAAGACAACCGACAAATCTTTTAGACAACGATTA TTTGTTATTCTTGATGACTATTCTTTACCAAAAGGTTTTAGgtattattg ccgacccaaaaaaatatcagcgttttgattggtcgagagcatcgagatat ttgcgatatttcatatttctttagtctggaaatatgaccgcgttgacttt tgggggactgggtaagcggcgggagaaaaatcaaaacaaaacagccgaaa agaactgactttcggagaaactgacttggaAATCAAAAGGGggaaacgca acaaaaatatgttcagattaatttttactttggagttcttcaataaaaga cactaaaatcaaatctgatgaactaagaatttattataaaacAACTTTTG GCAAACTTGTCCGTGTGATagccaaacagttttttatcaatgcatacaaa aaaacttgagattcttgaatgtttgccaataaaatttctcataacataac aaggaaagtgtaatgtcttgtatttaaccaaatgacgagtgatttttata aaagttctctcctaattctcgttctcgacaacaacgtagtctacgtcctt gacttttcaactcaacaatcattatacgtcttccttctaaaattcgaaac atttagagcttgacgataatcaagaaagtatccaaattgttttgctgttg aaaaaatgttgttctttaaccatttttacaagcatacatttccatcatgg gactcctttcctctgctattctttcccaTGCATGGCCATGTcaccgaaac aaaaacatagaaaaagactgaatgttatcaatctgattaatctattgatg gagggtttcttctctatcgaaaccatactgtacatcatctgcattttgaa ttatcaatctagaaactttcaaatacatctctaaaaaatctgcaactctt caaaacaaaacttctagatcgaaaatgatcgaaaaatgtttctctatttt gtttttgtgtgaatatttttagcgggaagttatcgaatgttattttgttc gaatctaacgttcgaattagattttcgaataaaaacattcgaaagtacac agaagcagaagaaagcggaagtaagtttaaaaacaaaaagaggacaattt ttttgagtcgacaataaattagttatcacatgacttctcgtgcaatactc gatattttactcgttccgagattttaccgatatttttcctcgcctaaagg ctcggaaaaatattacggaaaaatctcggaactcgtaaaatatttctcgt attgcactcgaagtcatgcgataactagtacctATTTACGACAAAAAGTC TGATAGAAACTAACGAAATACGACGATGGCTCACTTTTATgtttacctta agagaagaattTTTGGCAAGAAGAATTTTTAGCTAATGAGCCCATTcgcc aattttggtgcaatttggcgaaatttattttggcgatttaataaaGTTTC TAAATTTGGCGATAATTATttttggcgaacgacccatttttgttcaataa tttagctgaaaaaaaagaggaaaagaagggtttttaggagaaatgaagac taaattgaaagaaaatttaatttggcgggaattctTTTTTGGTGAATGAC CTatgaatttaaatttggcggagaGAAATATTGGCGAAATTTTTAGGTag ttcgccaaattcgccaaaatttcttctcttaaggtatttACTATGTTGCA AGCAAGCAATAAATTATTCACAAGTTATTTGACAGTCTTATTGTTGAATA ATTCACTGGCCAGAAGTGACCAAACTTTCGGTATTTCGGGATCCTGACTT TGGCCTTCCACTTTGGATAATACAGTTATCTTCTTTATTTTAAGGTCAAT AGATGGTTTGATTTGGCCATCGATAAGAAATAAACAGATTCCCCTCTGGC AATATGGGGTTGTCAGATTTCAAgtaagtagcccccccccccttcatttT ACATCTACTAACAGTATTATGTTAAGACTTGAGCACGTGGTTCCAATTGA AATTGTAGAAGTCTTCCCGTCCTTTCCACAATAGAGTTTTACTGGTTTCT TTTCAAGTTATCTACCTCTCATAAATTTATGTCCCAAATTTGCGATTTTC AAATTCCTTCATTTATATTTCATATACTGAAATCCATCCACGATCAGATT GCACCATTTTTGGTTTCCGCCTGGAAATCACCCTCAAAAGAATCGATCTA ATTTTACTgtttccgtctcagacgaaatTCCGTCCCAGAAATGTATAAAA AATAGCATTTACCACAAAATTCAACGAAATTTTATTAAGAATCTGACATT ACTTATGGGTGGAAAGCCAATTTCAGGTTACTTTAGCCACTGCTTATTAC ACATTTAGTTTTTTAAACCAGTGAACGATTCAATTAATCAAAGTCTCAAT ACTTATGTAAATGAGAGTTAGGGGGCTGTATCAATGCTTTTTCTACTTAT AGGTTTTCCTGTTATACTTTTACGCCGGTCTGAAGAAGCTGGATCGTGAT TGGATGACAGGCTATTCCATGGTTGGCTTATCGAGGGAATTCGTCTTCGA TCCTTTCCGATCGTTTTTGACGAATGAGCAGATTGATTTTTATATGGTTC ATTGTTGTGGCTTGATGTTCGACCTGGTCCAAGGctttatgttgtttttt gataCCACTCGACCAATTGGTATGTATTGGTTTGGCTTTCATGTAAAGAT TTAAGAAACGTCTTGATAGAATGtaccttatcgggaaaaaaaatgtgttt tatttagttggttttttttttcgtcggggaaaaatttcgtcacctagagg catttccGTCACTTTTCTccgacaaaaatttcaaattcatcacttccacc cgactaaattgtccaaaagaaatgatttccttcactagctcgaaaataga tcttgtaattcgacgtttaaagcactaatttcggtaaataaaggtgtaaa aaaattagatttgaattttggttgcggtataaaagttcgggtaaatgttt tggtcggggataaaaaaatcgggtacaagttttggtcgggtgataaaatg tcggggaaatatttcgtcggggaaaatttcgtcaccccctcaaaattttc gtcactttcccccgacattttttccccgataaggtatacaatAAAACCTC CAATAAATGGCCACTCTAGCCAAGCGGATAACTCTGATAAGCGGAAAATC CTATTTTCCCCGGCCATTTCCTAGTCAAAGCCAAACGTATCCACAAATTA GCGGACCAAAGTTTAttgcacgaaatggccaaaactatACTTTTTCCTCT CTATTTAGCGTCATCGACGGTCAAAATTTTCACAGACTTTCTAAAAGATT AGACAGGATTGATTTAATCAAACGTCTTCATCTCTTTACCTCTTTCGCTA GGTTTCTTTTTCGGTTACAATTTTCATATCATGAATGCAGTGATGTTCAA CATTGGTATGTTCTCTTACATGTGTATGGCTGTCATACCGATATTCTGCA GACCGGAATGGCCaaagaaaatcatcaaaatgttACCGTCGTTCTTACAG AAAGTCTTACCTATGACTGAAGATTCGGTGGACAATAAATCATGCACATT GATTGAACAACCTCCATCCAAGAAGAAGAAACTGAAACCAAGAAGTTGGA CTTGGAACAATCTGTTCATGAATTTACTATGTTTACATTATGTTGCAGCA CAGTTATTCTTACCttattctcatttcttgacaaaGGTAAAGTGATTTCC ATTTCCCTCTTCTTGACATGGAAGGTTTTCCTACATTCTACAAATATGAC GAAAAATCAGAACTCGAATAATATATCCCATATatcccactcgattcgtt acctttgagaaaactgggaagtacattagtgcaggatccgttgattcatt acccataagtaatacgcacttgatttcacacagTGACTGTTGATGGACTA GTTGTCCGAGATCGGAGCTCCGTTGGGCTAATGCCTCTCCCCAATGTACA TAGCTTAACAGTTCTCTCAAAGTTAGCGTGTTGGTTGGGGATTGGACACT AGCTGTGTCTCAGTTCGTGGCAATTCCATTGATTCGTAGAATTCAGGTAC CGGATGGTGAACATTGAGCACATTGTTCCCCTCGTCTACTACGAACTAGT GTAATAGCAACGAACCGATAGCgcagttgggagagcaatcgcccggcaag cgagaggtcgtgggttcaatccccactcgattcgttacctttgagaaaac tgggaagtacattagtgcaggatccgtcgATTCATATCCCATATTGTAGT CTGTACCGTGTGATAACTGTTATATATTTATTATCTCTCCTATGACTAAT CTCCATCTCCCAGTGTTATCCCAGGCCTTTTCTTTAAGGCTGCTATCGCT CTAAAACAGTTAGTGACAGCTTAGACATGATTTCAAGAtacattattttt ttgcttcaaCAGGGCTACAATTCATGGACACAAGGTTTATACGGTTACTC ATGGGATATGATGATCCATTCGTGGAGTACACAACACGTGGTCGTCAAGG TTACCGATCAAATAACAAACAAAGAACAATATCTCAGACCTGGTGTAAGT TGACAAGCAGTAACGGTCGTTTTCTGTTCGCTCTACTTTGCCAACTTTAA TCAAGTTTCAATCCCTATATCCCTACTTTCATTGTGGGAACCAAATTAGt tattttgaaatctaggtAAGGGTTACGCCGGCAAGCTATGAGCTAAATAT TCGATGTTCGGTATCAAATATCACGACAACTTTTCATATGTCTTCAACCG CATTACATCTTTGATCATCatttgaacatattttttaggcatttttcCCA TACGGAGATTCAAAGAATCGTATCTTCTCACATCCAGACATGTTGAAACA ATACGCAACTTGTTTGGCTGATCGAGTCAAAGGAATGGATGAACTGGGTA TTCAACATCCACAAATTACCGTGGATGTGTGGAAATCCATGAATGGTCGA TACCAACAACGCATGGTAGATGAGTTTTGTgtgaattttctttcaatttt ttaccaAAGTTTTCGTGTGCTATTTTCTAAGCAATCTTTTGACTGATGAA TGGTTTTTGTTGGCTTCTACACTTAGTTCACTTTATTTTCTTGTCAATCT TTTGAAAAGTATCAATGGGAAAGAGGAATAAATAACTGCCCACTTCAAAG TCTAGCAAGATAATTTTGAACTCAGACCAATTGGCTTATGGCGTACAAAT GGCGCTCTCtcattcgattttcaaaaggaattggattttcattgaataag gggATTTCGAATAGCAGAGCGTCCCtcactttcaatattatcgaataacg gagcgtatcgaatagtacgaccttgaattagagagcgtcaatttcattta aaattcatttctagCTTGATCCAACGGTGGACCTTGTGACTGCAGAATGG GACCCTTTCACACACACCAAATGGATGCAACCTCTTCTTGTTGAGCTTTC CTCATGGAGAAGCACACTTAAACAAATCCGTAATGCGAACTTCGAAGTGA ATAATGCAACAGAGATTGTGTTCGTAGCAGATTTCCCTGGTTTGTCACTT GAGAATTACATAGCACCTGAGATCAAAGCTAATGTGACTGTTCTCAAAGG TATTACGTTTATGagaaattatttctttattcaGTTTTCACAGACTGTTT ATGCCTTATTCAATTAACATTCATTCGTCAATCCTTGTGTGTAGTGTTGA CCCCTTCAGTACGAGTAAGCTAGCGGTTGACCTTCTCCGGGGCTAGATTT TAGCCGCTCCCAGAAACTGGTCCTTTTTTAACTTTCTTCACTACGACCTG TTATTAAAACTTTGAGTGTAATATAAACCTTCCTTACTCCCGACACAGGT GAAGTGATTGTCCAATCAGAACATGACCACAACACGACTGTCAAAGTGAA CGAAACGTTGAATTTGGCGAGCGATGAAACCCACGTGATTCACACAGTAA CCAATGATCCTTCGTGTTATATGTATGTTTACTACAATGAAAGTTGGGTT GATAAAACTGATGAAGAACTATTGGCGTCTGATACAGGTATTCAAACAGC CTTTTGCTGAGTATCATTCTCGATGTTCACGATGTGAGCTTTAATCGAGT ATTTCGTGTTCGAAATGaattatgggtaatcaggactgattgcgttCTAG TAACAGCTTCCCGTCGGTTAGACGCAAAAACATCGAACATTTTAGATCAA CAGAAAGCCGATCTTAGAGTGTCGTGATTACCCGCAGTTCCTTTCAACCT TCAATCTTTCAACCATGACAGTCGATAAAGGTTTATGTTGTTGATATCGT AGAAATCATGTCattgttaaaaaaagtttattcaaaAGTATAAAGGAGGC ACTTTCTTGAATTCTCCATTCGACAACTATTTTAACTCTAAATATGTTTA AAAGAGCCTAATATTAACATAAAAGTTGACCCACTTTGAGGTGTTGTGAT TTATAACCAAAGGAGAAGATTTATAGCGCATGGCACATGTGATGTGGCTC TTCCAatacattttctatttttgttgtCAGAATATCAAAAGAAGTTGGAG TCGGCAAAGAAGTGGAAAGAGATGCCAGTGTACGAAAAGTTTTATACATT TATGAAGAAGAAAGTTATGAACATGAAATATGGGCTGCAACAAATTCACA TGGCCATGAATATTATCATTGAAGATTTGACTGAGCTTGAAATGTATCCG CGTGAAGACGCGCATGAGGGGGACTGGGAAGGAGAGGGCCGTGGAAAAGG GAAACATGATGATGAGTTATGA

Coding sequence (CDS) from alignment at sc0000277_pilon:96603..104224+

>XLOC_037999 ID=XLOC_037999|Name=XLOC_037999|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4026bp|location=Sequence derived from alignment at sc0000277_pilon:96603..104224+ (Clytia hemisphaerica_ch_hm2_pilon)
atgagaaattacATAGACAGAATTTTACTGAAAATCAACGAAGGGCGTGA
CCCTGCTGCATTGGGTGTTCTTCGATTTTGCTATGatgagaaattacATA
GACAGAATTTTACTGAAAATCAACGAAGGGCGTGACCCTGCTGCATTGGG
TGTTCTTCGATTTTGCTATGGACTTTTAATGATTATCGACATTTTTGACG
AACGTGGTTTGTCTCGATTACCCATCAAGCATGGCGACCCTTCATCCTGC
TACTTCCCGCTATTCGATAATATGCCTCGATTATCAATCGAATATTTATA
CTTAGTATATCTggttttgctgatgtcagcatttggGATAATGATTGGGA
TGTTCTTCAAGTTgtcttgtttttgtttcatgTCTTGTTATTGGTACATC
TTTTTCCTGGATAAAACTGTTTGGAATAATCATTCATATTTGTATGGATT
GATATCCATCATTTTGTTGCTAAGCAACGCTAATTATTATTGGACTTTTA
ATGATTATCGACATTTTTGACGAACGTGGTTTGTCTCGATTACCCATCAA
GCATGGCGACCCTTCATCCTGCTACTTCCCGCTATTCGATAATATGCCTC
GATTATCAATCGAATATTTATACTTAGTATATCTggttttgctgatgtca
gcatttggGATAATGATTGGGATGTTCTTCAAGTTgtcttgtttttgttt
catgTCTTGTTATTGGTACATCTTTTTCCTGGATAAAACTGTTTGGAATA
ATCATTCATATTTGTATGGATTGATATCCATCATTTTGTTGCTAAGCAAC
GCTAATTATTATTGGTCAATAGATGGTTTGATTTGGCCATCGATAAGAAA
TAAACAGATTCCCCTCTGGCAATATGGGGTTGTCAGATTTCAAGTCAATA
GATGGTTTGATTTGGCCATCGATAAGAAATAAACAGATTCCCCTCTGGCA
ATATGGGGTTGTCAGATTTCAAGTTTTCCTGTTATACTTTTACGCCGGTC
TGAAGAAGCTGGATCGTGATTGGATGACAGGCTATTCCATGGTTGGCTTA
TCGAGGGAATTCGTCTTCGATCCTTTCCGATCGTTTTTGACGAATGAGCA
GATTGATTTTTATATGGTTCATTGTTGTGGCTTGATGTTCGACCTGGTCC
AAGGctttatgttgttttttgataCCACTCGACCAATTGGTTTTCCTGTT
ATACTTTTACGCCGGTCTGAAGAAGCTGGATCGTGATTGGATGACAGGCT
ATTCCATGGTTGGCTTATCGAGGGAATTCGTCTTCGATCCTTTCCGATCG
TTTTTGACGAATGAGCAGATTGATTTTTATATGGTTCATTGTTGTGGCTT
GATGTTCGACCTGGTCCAAGGctttatgttgttttttgataCCACTCGAC
CAATTGGTTTCTTTTTCGGTTACAATTTTCATATCATGAATGCAGTGATG
TTCAACATTGGTATGTTCTCTTACATGTGTATGGCTGTCATACCGATATT
CTGCAGACCGGAATGGCCaaagaaaatcatcaaaatgttACCGTCGTTCT
TACAGAAAGTCTTACCTATGACTGAAGATTCGGTGGACAATAAATCATGC
ACATTGATTGAACAACCTCCATCCAAGAAGAAGAAACTGAAACCAAGAAG
TTGGACTTGGAACAATCTGTTCATGAATTTACTATGTTTACATTATGTTG
CAGCACAGTTATTCTTACCttattctcatttcttgacaaaGGTTTCTTTT
TCGGTTACAATTTTCATATCATGAATGCAGTGATGTTCAACATTGGTATG
TTCTCTTACATGTGTATGGCTGTCATACCGATATTCTGCAGACCGGAATG
GCCaaagaaaatcatcaaaatgttACCGTCGTTCTTACAGAAAGTCTTAC
CTATGACTGAAGATTCGGTGGACAATAAATCATGCACATTGATTGAACAA
CCTCCATCCAAGAAGAAGAAACTGAAACCAAGAAGTTGGACTTGGAACAA
TCTGTTCATGAATTTACTATGTTTACATTATGTTGCAGCACAGTTATTCT
TACCttattctcatttcttgacaaaGGGCTACAATTCATGGACACAAGGT
TTATACGGTTACTCATGGGATATGATGATCCATTCGTGGAGTACACAACA
CGTGGTCGTCAAGGTTACCGATCAAATAACAAACAAAGAACAATATCTCA
GACCTGGTGGCTACAATTCATGGACACAAGGTTTATACGGTTACTCATGG
GATATGATGATCCATTCGTGGAGTACACAACACGTGGTCGTCAAGGTTAC
CGATCAAATAACAAACAAAGAACAATATCTCAGACCTGGTgcatttttcC
CATACGGAGATTCAAAGAATCGTATCTTCTCACATCCAGACATGTTGAAA
CAATACGCAACTTGTTTGGCTGATCGAGTCAAAGGAATGGATGAACTGGG
TATTCAACATCCACAAATTACCGTGGATGTGTGGAAATCCATGAATGGTC
GATACCAACAACGCATGgcatttttcCCATACGGAGATTCAAAGAATCGT
ATCTTCTCACATCCAGACATGTTGAAACAATACGCAACTTGTTTGGCTGA
TCGAGTCAAAGGAATGGATGAACTGGGTATTCAACATCCACAAATTACCG
TGGATGTGTGGAAATCCATGAATGGTCGATACCAACAACGCATGCTTGAT
CCAACGGTGGACCTTGTGACTGCAGAATGGGACCCTTTCACACACACCAA
ATGGATGCAACCTCTTCTTGTTGAGCTTTCCTCATGGAGAAGCACACTTA
AACAAATCCGTAATGCGAACTTCGAAGTGAATAATGCAACAGAGATTGTG
TTCGTAGCAGATTTCCCTGGTTTGTCACTTGAGAATTACATAGCACCTGA
GATCAAAGCTAATGTGACTGTTCTCAAAGCTTGATCCAACGGTGGACCTT
GTGACTGCAGAATGGGACCCTTTCACACACACCAAATGGATGCAACCTCT
TCTTGTTGAGCTTTCCTCATGGAGAAGCACACTTAAACAAATCCGTAATG
CGAACTTCGAAGTGAATAATGCAACAGAGATTGTGTTCGTAGCAGATTTC
CCTGGTTTGTCACTTGAGAATTACATAGCACCTGAGATCAAAGCTAATGT
GACTGTTCTCAAAGGTGAAGTGATTGTCCAATCAGAACATGACCACAACA
CGACTGTCAAAGTGAACGAAACGTTGAATTTGGCGAGCGATGAAACCCAC
GTGATTCACACAGTAACCAATGATCCTTCGTGTTATATGTATGTTTACTA
CAATGAAAGTTGGGTTGATAAAACTGATGAAGAACTATTGGCGTCTGATA
CAGGTGAAGTGATTGTCCAATCAGAACATGACCACAACACGACTGTCAAA
GTGAACGAAACGTTGAATTTGGCGAGCGATGAAACCCACGTGATTCACAC
AGTAACCAATGATCCTTCGTGTTATATGTATGTTTACTACAATGAAAGTT
GGGTTGATAAAACTGATGAAGAACTATTGGCGTCTGATACAGAATATCAA
AAGAAGTTGGAGTCGGCAAAGAAGTGGAAAGAGATGCCAGTGTACGAAAA
GTTTTATACATTTATGAAGAAGAAAGTTATGAACATGAAATATGGGCTGC
AACAAATTCACATGGCCATGAATATTATCATTGAAGATTTGACTGAGCTT
GAAATGTATCCGCGTGAAGACGCGCATGAGGGGGACTGGGAAGGAGAGGG
CCGTGGAAAAGGGAAACATGATGATGAGTTATGAAATATCAAAAGAAGTT
GGAGTCGGCAAAGAAGTGGAAAGAGATGCCAGTGTACGAAAAGTTTTATA
CATTTATGAAGAAGAAAGTTATGAACATGAAATATGGGCTGCAACAAATT
CACATGGCCATGAATATTATCATTGAAGATTTGACTGAGCTTGAAATGTA
TCCGCGTGAAGACGCGCATGAGGGGGACTGGGAAGGAGAGGGCCGTGGAA
AAGGGAAACATGATGATGAGTTATGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_037999XLOC_037999-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000277_pilongenomesc0000277_pilon:96603..104224 +
Properties
Property NameValue
Aaloc1774-2013:7383
Aaloc1585-1770:6701
Aaloc1348-1581:6215
Aaloc1171-1347:5639
Aaloc1039-1170:5263
Aaloc706-1038:4204
Aaloc487-702:3253
Aaloc409-486:2646
Aaloc88-405:371
Aaloc1-84:1