XLOC_037638 (mRNA) -

Overview


Name	XLOC_037638
Unique Name	XLOC_037638
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000025_pilon:1465678..1470241+
coding sequence from alignment at sc0000025_pilon:1465678..1470241+

mRNA from alignment at sc0000025_pilon:1465678..1470241+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_037638 ID=XLOC_037638|Name=XLOC_037638|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4564bp|location=Sequence derived from alignment at sc0000025_pilon:1465678..1470241+ (Clytia hemisphaerica_ch_hm2_pilon)
atttcaggaaatCTTAAACGGTCAAAAGGACGTCCAACATTGAAACAACA
ACTGGAAAAGGATCAAGAAGAGCTTTTGCGAAATCCTAAAAGAAAATGTG
TAACATCATACTTTAAATCTTCAAGTGGGAAATCTATCGAGAAACCTATT
AACCCTTCTACAGACCAACCAAGCACTAGCCATGATCAATCTTCTCGGGA
AAAAGAAATACTTAGTGAGGAATTAACACGTGTGAGAAATGAAAACTCAA
ACTTGAGAATTGAAGTGATGTATTTAAAGAGACAAGAAAAGAACGAGATA
GAGATTTTACAAGACACTAATAAAAAGCTGCAAGAGGAAATAAGTGTTCT
AAAAAGAACTAACCAATACATAACGGAAGAACTTgcttcagaaaaatcaa
aactgcaAAACGTTTTAAAGCATGATATGGTTAAGGAAGTTTTGAGTCTT
TCCTCGGCAGAAAAGAACACGCTCAAGCCAATACAAAAGGCTATAATCAA
ATCGATCATAAACAATTCAATTTCTAAACGCAGTACTTATTCTACAATCG
AACGTGATTTTTGGCTGGATTTATACCACAATATCTCACACCGTGTATTC
AATCGAGTTAGCGGAACTTTGAATGGACCCTGGCGCTCCACTGTTGATAA
TTGGAGTGGACCAGTTGAAAGAAACTCCTTTAATCTATCTTGGCGTAAGT
ATTCTTAAAAGCATATTTGTTACAAatcttttccttcaaaaaacatACAG
GTATCAATAAATGATTTCTCAATTCAATTTCTGTTCAGTTGTACTTAAAC
GGAGAGGGTGTAATTTTCAAGGGGGGTTGGTATTTTAGGTAATACTGCTA
AACAGGGAGGGTCTTTATAAATGGTGGTTTCTAGgccaaaaaaaacaaga
agGTTCCCCCACAAATAGCTGCAAGAGTTGGGTTTGAAATTAGCAGTTGG
CTGGaacatttttataagatttaTTCTCATGGTGGTTGGAATTAAAAGAA
TGTGATGGAAAATTACCAGTAAGAAAGGTGCtgaagaattgaaaataaaa
tttattagcCAAGTGGAAATCCACTAGAGACTTGAGAGTAGTCAATAAAC
TCCAACTGTCACCTGAAAAAGGCTCTCCCATCTACTAAAGGTTGCCTTTA
CCATCTTCATAGATCTAAAACAGCTGTTTTTGCTTCAGGTATTGTGGAAA
GAAGCTGTAGATATGTTTCAGAATCAAAATCAGAATTAGAAATTCCAGAG
ACTGATCCCATTACCAATATTGAAAAGATTCCATGGTCAACCAAAACAAC
CACCTTGGATGATCTTACAGTTGTAACAAATTGTATGGTTGACGAGACTG
CCTTGAAGCCAACTGTGCAATTCAATCGAGATGACAAATGCTTGTATGGG
TTTTCTGCAATGCCACGATTTGTTTTGATTCGTAAGATCAACAAACATTT
TGAtatctcttctttttttgatggtttgacaCTGCAGCGAGACTCAAAAG
ACAACAAACCAATTTGTGGAGTTGTGGAATCAAGAGGTAATTTCATTGGG
TATGCTCAATTTAAAACCTACGAAGACTGGAAAATCGCCTTGACAAAAGG
AAATGAGAACTTTACAGTTGAAATGATCGAGTCCAACCCTAGGGTGAATA
TGAATAATCCCAAATCTAGCGTGGATCAAATCTTCCAGGATTCTGAAAGT
ATTGGAAGACCACATTCAACATATGTGTACTCGTTAATGATATCCAACTG
CTGCAAATCGTTACCAATTCAAGAGATAACGTCAATTAGCACAAACAACC
GCTTTTTACAACATCAAGACCATCAGCTTCTTGCCTTCAGTGTTATGAAA
ATGCTAAATTTCTATGGAATTCCCATGTTCCAGTTTGTGGCAGATGGTGA
CTCAAGATTCCGGAAGCAAATGCTCATCATGACTGGTTATGTCCCATCTC
TTAGTAAGTTTTTGCTTCGCTTGTTTTTCAtcgtcagaaaaaaattaaat
agatCAGTGTGTGGAGTTTTTCTAATGTCATTTAAAATTGACTACAAACT
GGGCATCAGGGActgctttcattttcattccaAAACACTCTTAGATTTTT
AGACCCTTCCCCATCTATAAGAGACCAAAAAGCATTACAAGACCAAAAAG
TATTACGCCTTGCATAACTTCTTCCCAAATTTTTAGGAGTCTCTTACAAA
TTTTACTGAcagacaaaaatttattttctttgttagcATTGATCCAGATG
AAAGAATCGTTTTCCGAAATCAGCCAGAACCTTGTTGATGAGTCTCTCAA
TTATGGGTGGAAGGTAAAGCCTCCAAGTGATTTTCAGATTTGCCACTACA
TTCGTAAGTCAGAACAAATGGTCAGAGCAAAGCAATGCAGTTACTTAGAA
TCCAAAGCAAATGAAACATTTTGCGCGGAAGATAGTagcaaaatcaactt
ttatttaacCGTACCTTGCCTGGCAGATGTGTTCACGATGTCTGCCCCAT
TTATTGGTGGACTTCCAAGAATGGCAACACAAGATCAGATGCATTGGACA
AGGAAGTTGGCCAAGTCATCCATCTTATCAACAAAACCTTTACGTCTTGG
TAACTACATTGTGACATTTCAGTCCTTAATTGATGTTTACCAAATGGGTC
CACAATTTGGTCTACTGAAGCAAGATGTTGACATAAACAATAAGACAGAG
CAGGCATCAGCTGAGAGACTTATCTCTGTGTCTTGTTTGAGTGGATTGAA
CAAACTTCATTGGGCTAAAGCCACACAATTCCTACTATATGTTTGTAAAT
TGGGTTTTGAAGCCTGGTGGAGACATGATCTATATCCAATTGAAAGAATT
GCAAATAGCTACTATGTATGCAAGGTAAACCCAATAATATGGTCTCATTC
AGTGTTTTAGGCTACCCAGACAAAATTTTAAGTAATACTATCCACATGCA
AAGAATCTCTATCTTAATCTTCCCTTCTCACTTATATAGCCTTTCTGATG
TATGTCATACAGTGACAAGCCTATGCCATTTATGATGATGAATAAATAAg
ctttaaattgttcttttttaggtCTTTCACCTCTGGCATTTATGGGTTAA
GACCTCGAAGTTAACTATGAAGTCGTGCTTTGTCACTTTGGAACTCTACC
GAGATACATTAGTTATGTGCTCATCACTGATGCACTTAGCCTTGacgttc
aaactttttttgccACATTTGCCATTTATGCCTTGGAAATGGTCAGAATT
CCCAGTTGAAAACTATTACAGTTCAGTTCGGTAGGTATCACTGGTAATTT
AGATggctttattattttgataaccCTTTTAGCtttccttttttaaagat
ttcctgGGTCCGATAAAAAGCACTTGAACAGAATTTTTGACTCCAAAACT
TATCGATTCTATTTAACTgtgtatttattttcatttgacGtttttttact
tcaacacaattcaccttttgctttcgtgacttttgactttgacttttatt
tAGGACTGGCCACTTTATCCATCCAAACTAATCGGTTGTTATAAATTGAt
cagattttgtgattttttcggataaacaaaaaatgatgaaaaaattccAT
AACTAGCTAGCTAGTCACAAATCCACAATTTTCTTTATGCAGGTTTTTAT
TTGGTAATGACGATGAATTTTCTGCTTTGGAATATCTGTACAGAACAGCA
AAGCAGATGGCTCAACAGAAAGTACAAATCAATGGAAATATATCAAATAT
TAGAAATAAGCCAAACGCAAGTAAATGGAGGCATCCCAAAGTTCCAACCA
AAGATAAaaaccaaaatctttttcacaACGACTGGCAACTAGTTGATTTG
TTAAATCATCTTGAAAAAGTTGACATTGGAATAATAGAAGATTTTAAAGT
GCTCGGAATGGATGCATTACTATCAAAGCAACCACTATACAAGGTATACA
TCCCTCCAATCTTGCCAACCCTCATCTGATAAAAGGTGTCAATCTAATCT
CCAAACCAGCATAGTTATATACTCGAATTCCATTTTTAGTTTGAAAGTCA
ATTATAGACGTGTTTTAACCTTTAGGCGAAATCAGCAAGAGAAAGAATGA
AGAATCAGTGGGATCTTTGGAACTTTGGAACACCTATTAACACGTATAAT
TTCATCAATTGCTTCAGTCCATTGTCTGTCTCCACTCCTGTGATATCTAC
TGATGAAATAAGAAAGATAAGACAAGTGAGTGAAATTTATTTCTTAACAA
TACAATTATTTTGGTTATTCAACCTTTGAATCTCCCAATTTAAAATTTGA
CTATGAATGGAATTAACATGTTGAATATTTTAGGGGAGAATCCTATGCTG
GCACTGACTTATACCCCTTAATTGTTTGTCTTTCAATTTTCAGGCACCAC
ACATAGAGGTTGACGCAAGAGCAATGACACTAGCTAAATATGTGACTGTG
TACAAGCAAAGCGGTGGTGCTACTACTTCTGGTGTTCGAAACGCCAAACG
ATTCAGACAAACCACTACTCCAGCAAATATTACCACTGAAAACGATGGAG
AATCTAGCAACGAG

Coding sequence (CDS) from alignment at sc0000025_pilon:1465678..1470241+

>XLOC_037638 ID=XLOC_037638|Name=XLOC_037638|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5856bp|location=Sequence derived from alignment at sc0000025_pilon:1465678..1470241+ (Clytia hemisphaerica_ch_hm2_pilon)
atttcaggaaatCTTAAACGGTCAAAAGGACGTCCAACATTGAAACAACA
ACTGGAAAAGGATCAAGAAGAGCTTTTGCGAAATCCTAAAAGAAAATGTG
TAACATCATACTTTAAATCTTCAAGTGGGAAATCTATCGAGAAACCTATT
AACCCTTCTACAGACCAACCAAGCACTAGCCATGATCAATCTTCTCGGGA
AAAAGAAATACTTAGTGAGGAATTAACACGTGTGAGAAATGAAAACTCAA
ACTTGAGAATTGAAGTGATGTATTTAAAGAGACAAGAAAAGAACGAGATA
GAGATTTTACAAGACACTAATAAAAAGCTGCAAGAGGAAATAAGTGTTCT
AAAAAGAACTAACCAATACATAACGGAAGAACTTgcttcagaaaaatcaa
aactgcaAAACGTTTTAAAGCATGATATGGTTAAGGAAGTTTTGAGTCTT
TCCTCGGCAGAAAAGAACACGCTCAAGCCAATACAAAAGGCTATAATCAA
ATCGATCATAAACAATTCAATTTCTAAACGCAGTACTTATTCTACAATCG
AACGTGATTTTTGGCTGGATTTATACCACAATATCTCACACCGTGTATTC
AATCGAGTTAGCGGAACTTTGAATGGACCCTGGCGCTCCACTGTTGATAA
TTGGAGTGGACCAGTTGAAAGAAACTCCTTTAATCTATCTTGGCatttca
ggaaatCTTAAACGGTCAAAAGGACGTCCAACATTGAAACAACAACTGGA
AAAGGATCAAGAAGAGCTTTTGCGAAATCCTAAAAGAAAATGTGTAACAT
CATACTTTAAATCTTCAAGTGGGAAATCTATCGAGAAACCTATTAACCCT
TCTACAGACCAACCAAGCACTAGCCATGATCAATCTTCTCGGGAAAAAGA
AATACTTAGTGAGGAATTAACACGTGTGAGAAATGAAAACTCAAACTTGA
GAATTGAAGTGATGTATTTAAAGAGACAAGAAAAGAACGAGATAGAGATT
TTACAAGACACTAATAAAAAGCTGCAAGAGGAAATAAGTGTTCTAAAAAG
AACTAACCAATACATAACGGAAGAACTTgcttcagaaaaatcaaaactgc
aAAACGTTTTAAAGCATGATATGGTTAAGGAAGTTTTGAGTCTTTCCTCG
GCAGAAAAGAACACGCTCAAGCCAATACAAAAGGCTATAATCAAATCGAT
CATAAACAATTCAATTTCTAAACGCAGTACTTATTCTACAATCGAACGTG
ATTTTTGGCTGGATTTATACCACAATATCTCACACCGTGTATTCAATCGA
GTTAGCGGAACTTTGAATGGACCCTGGCGCTCCACTGTTGATAATTGGAG
TGGACCAGTTGAAAGAAACTCCTTTAATCTATCTTGGCGTATTGTGGAAA
GAAGCTGTAGATATGTTTCAGAATCAAAATCAGAATTAGAAATTCCAGAG
ACTGATCCCATTACCAATATTGAAAAGATTCCATGGTCAACCAAAACAAC
CACCTTGGATGATCTTACAGTTGTAACAAATTGTATGGTTGACGAGACTG
CCTTGAAGCCAACTGTGCAATTCAATCGAGATGACAAATGCTTGTATGGG
TTTTCTGCAATGCCACGATTTGTTTTGATTCGTAAGATCAACAAACATTT
TGAtatctcttctttttttgatggtttgacaCTGCAGCGAGACTCAAAAG
ACAACAAACCAATTTGTGGAGTTGTGGAATCAAGAGGTAATTTCATTGGG
TATGCTCAATTTAAAACCTACGAAGACTGGAAAATCGCCTTGACAAAAGG
AAATGAGAACTTTACAGTTGAAATGATCGAGTCCAACCCTAGGGTGAATA
TGAATAATCCCAAATCTAGCGTGGATCAAATCTTCCAGGATTCTGAAAGT
ATTGGAAGACCACATTCAACATATGTGTACTCGTTAATGATATCCAACTG
CTGCAAATCGTTACCAATTCAAGAGATAACGTCAATTAGCACAAACAACC
GCTTTTTACAACATCAAGACCATCAGCTTCTTGCCTTCAGTGTTATGAAA
ATGCTAAATTTCTATGGAATTCCCATGTTCCAGTTTGTGGCAGATGGTGA
CTCAAGATTCCGGAAGCAAATGCTCATCATGACTGGTTATGTCCCATCTC
TTAGTATTGTGGAAAGAAGCTGTAGATATGTTTCAGAATCAAAATCAGAA
TTAGAAATTCCAGAGACTGATCCCATTACCAATATTGAAAAGATTCCATG
GTCAACCAAAACAACCACCTTGGATGATCTTACAGTTGTAACAAATTGTA
TGGTTGACGAGACTGCCTTGAAGCCAACTGTGCAATTCAATCGAGATGAC
AAATGCTTGTATGGGTTTTCTGCAATGCCACGATTTGTTTTGATTCGTAA
GATCAACAAACATTTTGAtatctcttctttttttgatggtttgacaCTGC
AGCGAGACTCAAAAGACAACAAACCAATTTGTGGAGTTGTGGAATCAAGA
GGTAATTTCATTGGGTATGCTCAATTTAAAACCTACGAAGACTGGAAAAT
CGCCTTGACAAAAGGAAATGAGAACTTTACAGTTGAAATGATCGAGTCCA
ACCCTAGGGTGAATATGAATAATCCCAAATCTAGCGTGGATCAAATCTTC
CAGGATTCTGAAAGTATTGGAAGACCACATTCAACATATGTGTACTCGTT
AATGATATCCAACTGCTGCAAATCGTTACCAATTCAAGAGATAACGTCAA
TTAGCACAAACAACCGCTTTTTACAACATCAAGACCATCAGCTTCTTGCC
TTCAGTGTTATGAAAATGCTAAATTTCTATGGAATTCCCATGTTCCAGTT
TGTGGCAGATGGTGACTCAAGATTCCGGAAGCAAATGCTCATCATGACTG
GTTATGTCCCATCTCTTAcATTGATCCAGATGAAAGAATCGTTTTCCGAA
ATCAGCCAGAACCTTGTTGATGAGTCTCTCAATTATGGGTGGAAGGTAAA
GCCTCCAAGTGATTTTCAGATTTGCCACTACATTCGTAAGTCAGAACAAA
TGGTCAGAGCAAAGCAATGCAGTTACTTAGAATCCAAAGCAAATGAAACA
TTTTGCGCGGAAGATAGTagcaaaatcaacttttatttaacCGTACCTTG
CCTGGCAGATGTGTTCACGATGTCTGCCCCATTTATTGGTGGACTTCCAA
GAATGGCAACACAAGATCAGATGCATTGGACAAGGAAGTTGGCCAAGTCA
TCCATCTTATCAACAAAACCTTTACGTCTTGGTAACTACATTGTGACATT
TCAGTCCTTAATTGATGTTTACCAAATGGGTCCACAATTTGGTCTACTGA
AGCAAGATGTTGACATAAACAATAAGACAGAGCAGGCATCAGCTGAGAGA
CTTATCTCTGTGTCTTGTTTGAGTGGATTGAACAAACTTCATTGGGCTAA
AGCCACACAATTCCTACTATATGTTTGTAAATTGGGTTTTGAAGCCTGGT
GGAGACATGATCTATATCCAATTGAAAGAATTGCAAATAGCTACTATGTA
TGCAAGcATTGATCCAGATGAAAGAATCGTTTTCCGAAATCAGCCAGAAC
CTTGTTGATGAGTCTCTCAATTATGGGTGGAAGGTAAAGCCTCCAAGTGA
TTTTCAGATTTGCCACTACATTCGTAAGTCAGAACAAATGGTCAGAGCAA
AGCAATGCAGTTACTTAGAATCCAAAGCAAATGAAACATTTTGCGCGGAA
GATAGTagcaaaatcaacttttatttaacCGTACCTTGCCTGGCAGATGT
GTTCACGATGTCTGCCCCATTTATTGGTGGACTTCCAAGAATGGCAACAC
AAGATCAGATGCATTGGACAAGGAAGTTGGCCAAGTCATCCATCTTATCA
ACAAAACCTTTACGTCTTGGTAACTACATTGTGACATTTCAGTCCTTAAT
TGATGTTTACCAAATGGGTCCACAATTTGGTCTACTGAAGCAAGATGTTG
ACATAAACAATAAGACAGAGCAGGCATCAGCTGAGAGACTTATCTCTGTG
TCTTGTTTGAGTGGATTGAACAAACTTCATTGGGCTAAAGCCACACAATT
CCTACTATATGTTTGTAAATTGGGTTTTGAAGCCTGGTGGAGACATGATC
TATATCCAATTGAAAGAATTGCAAATAGCTACTATGTATGCAAGgtCTTT
CACCTCTGGCATTTATGGGTTAAGACCTCGAAGTTAACTATGAAGTCGTG
CTTTGTCACTTTGGAACTCTACCGAGATACATTAGTTATGTGCTCATCAC
TGATGCACTTAGCCTTGacgttcaaactttttttgccACATTTGCCATTT
ATGCCTTGGAAATGGTCAGAATTCCCAGTTGAAAACTATTACAGTTCAGT
TCGgtCTTTCACCTCTGGCATTTATGGGTTAAGACCTCGAAGTTAACTAT
GAAGTCGTGCTTTGTCACTTTGGAACTCTACCGAGATACATTAGTTATGT
GCTCATCACTGATGCACTTAGCCTTGacgttcaaactttttttgccACAT
TTGCCATTTATGCCTTGGAAATGGTCAGAATTCCCAGTTGAAAACTATTA
CAGTTCAGTTCGGTTTTTATTTGGTAATGACGATGAATTTTCTGCTTTGG
AATATCTGTACAGAACAGCAAAGCAGATGGCTCAACAGAAAGTACAAATC
AATGGAAATATATCAAATATTAGAAATAAGCCAAACGCAAGTAAATGGAG
GCATCCCAAAGTTCCAACCAAAGATAAaaaccaaaatctttttcacaACG
ACTGGCAACTAGTTGATTTGTTAAATCATCTTGAAAAAGTTGACATTGGA
ATAATAGAAGATTTTAAAGTGCTCGGAATGGATGCATTACTATCAAAGCA
ACCACTATACAAGGTTTTTATTTGGTAATGACGATGAATTTTCTGCTTTG
GAATATCTGTACAGAACAGCAAAGCAGATGGCTCAACAGAAAGTACAAAT
CAATGGAAATATATCAAATATTAGAAATAAGCCAAACGCAAGTAAATGGA
GGCATCCCAAAGTTCCAACCAAAGATAAaaaccaaaatctttttcacaAC
GACTGGCAACTAGTTGATTTGTTAAATCATCTTGAAAAAGTTGACATTGG
AATAATAGAAGATTTTAAAGTGCTCGGAATGGATGCATTACTATCAAAGC
AACCACTATACAAGGCGAAATCAGCAAGAGAAAGAATGAAGAATCAGTGG
GATCTTTGGAACTTTGGAACACCTATTAACACGTATAATTTCATCAATTG
CTTCAGTCCATTGTCTGTCTCCACTCCTGTGATATCTACTGATGAAATAA
GAAAGATAAGACAAGCGAAATCAGCAAGAGAAAGAATGAAGAATCAGTGG
GATCTTTGGAACTTTGGAACACCTATTAACACGTATAATTTCATCAATTG
CTTCAGTCCATTGTCTGTCTCCACTCCTGTGATATCTACTGATGAAATAA
GAAAGATAAGACAAGCACCACACATAGAGGTTGACGCAAGAGCAATGACA
CTAGCTAAATATGTGACTGTGTACAAGCAAAGCGGTGGTGCTACTACTTC
TGGTGTTCGAAACGCCAAACGATTCAGACAAACCACTACTCCAGCAAATA
TTACCACTGAAAACGATGGAGAATCTAGCAACGAGGCACCACACATAGAG
GTTGACGCAAGAGCAATGACACTAGCTAAATATGTGACTGTGTACAAGCA
AAGCGGTGGTGCTACTACTTCTGGTGTTCGAAACGCCAAACGATTCAGAC
AAACCACTACTCCAGCAAATATTACCACTGAAAACGATGGAGAATCTAGC
AACGAG

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_037638	XLOC_037638-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000025_pilon	genome	sc0000025_pilon:1465678..1470241 +

Properties


Property Name	Value
Aaloc	2758-2928:4394
Aaloc	2608-2757:4076
Aaloc	2308-2607:3644
Aaloc	2098-2304:3072
Aaloc	1462-2097:2239
Aaloc	697-1458:1191
Aaloc	1-693:1

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XLOC_037638 (mRNA) -