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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000042_pilon:1414450..1417533+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_037565 ID=XLOC_037565|Name=XLOC_037565|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3084bp|location=Sequence derived from alignment at sc0000042_pilon:1414450..1417533+ (Clytia hemisphaerica_ch_hm2_pilon)
aTGATGGATAACAAAAATATAGAAGTCAGTCGTGTGATGTTACCGGATGA
TTCCAATCTTGCTGGTAATGTTCACGGTGGAAGTATTTTGAAATTGATCG
AAGAAGCTGGCGAAATTATCGCAACAAGGCATTGCAATAAAAACAGACCA
GGTTACTATACATTTCCTCTTTGTTATGTTTATAAACGCAATGACTTCAT
AATAAATGTTTGTTTTGGCTTCAGTTGTAATATATAACTTAATACTTTTT
AACTCATATGAAAAGGCCAGTTAAAGTAATTCGTCAAATTTCATGGTTTT
ATTTCTTAATCTGTATTTGGCTCTTTCATCCCAGGTTTAGAGTTAATCTA
CTTTTCTTCTACTCTGAGCTAAAATTAATcatctgattttttttattttc
ttcaggaCCTGAATGTTACGCAGCACTTGCAAGAGTAGAACGAACAGATT
TCTTAGAACCAATGTTTGTTGGCGAGATAGCGCAAATTCATGCTGAAGTC
ACTTATGCTTCTGGTCACTCTCTTGAAGTTCAATGTACTGTTTACGCTGA
GAATGTTGTGAAAGGCAATAGAAGATTAACTAATAGGTAACCAAGACTCA
AAATCACAAGTTGGCTTGTTCATTTTCgcattttcctgtttttttgtcTA
CTGTACATACTTTCAATAAAGGGAGGGCCATCCTTCACCTATCCCTAATA
TTTACCTTACCACCTATCCCTAATATTTATCTTTATGTCATATTAGTGGA
catttgacaatttttgaagatGTTTGTTGTCTACCAAGCTCATAACTTGG
TTTCAACGCTAAGCAATAGATTATACAACATTCTTTTTAATATAGAGCAT
CACTCTGGTACGTTCCATTGGCAATCGCTCCACCTCACGCAGTGACTCTC
GTGCCGCCTTTGTCTTACAAGAGTGCTCAGGAAGAAGAGAAAGGAAAGAA
ACGTTATGAAGCTCAAAAGACATCAAGAAATCAAGCATCTGATTCTCTAA
ATGTAAGAAATTAATTTCTAGTGTTGTATGGTAATTATGAAATCTCAAAT
TGTTTGATCAACGAGCCACCATTTTACCTTTCCTCTTTacgatgaaatga
aaattaagaAACTGTTAGATCAATATTATTAACAACATTGATGACATAGT
CAGCAATTAAAGGGATAAATCACatgttttgtaatatttggcatgtggga
tcCTACTAAtcctgagcaaaatctcaaaatatttttgcctaactattttc
caaagtcaagatatttaagttacaagcttttggcttttaggattaaaaca
atagaatttcaacgtaagaaccgtgtaagaacccattttcaaaaatttga
tatctcgattttggGGGGAAATTGTTACATAAATatactttgaggtttta
ctaaGGATCACAGAATGTTTCtgtaatctaaatatctcaaaccatctgat
tatcccttttacTCTCAGCATTTAAATTGGATATGATAACCAACCATTTA
TAGCTGGAaaaattgttacacaaaaatactttgaggttttactaaGGATC
ACAGAATGTTTCtgtaatctaaatatctcaaaccatctgattatcccttt
aaatttCTATACTTGTTTATTATCTACAGGGCAAGGTCAAAGAATATTTC
TTTTAACTGTCACTTTAGATCGACGATGAAGCATCAGCTCCAGGAATGAT
CAATGTGTTGACACCAGCTGGTCGTAGTTTATGTGCACCTTATTCGGTAA
ATTACTCACATTCATCGCTCATTGTTATGCTACATCCTTCAGAATGCAAT
TCGTCTGGCTTTGCTTCTGGAGGTGCTACAATGAAAATGATGGATAATGT
TGCAGGCATTGTTGCTACTAGACATTGTAAATCCATGACTGTCACAGCTT
CCGTTGGTAAGTCATGTGTTTTCTCTGCACCAATTAATGGCCTGATCAAT
TCATCATTCATCAACCAATGTATTCACAATAGACAACTCCCATCTGAAAA
AAGGGAAACGAAAAGAGTAATAACATTAAGGGTTTGATTTTCTCATCTGC
attatttatgaaaaaattattttcgtcgACATAAATTCAACGACTCTTCA
TTCCCTTGGTGACATAGGTGTCAGAAAATTAAGGCCAAATATGTTTTATG
GGTAAACGTAAacctcgtgatccaagccacgataaacttccaatatgaag
tgaagtattgactgattttacgtcacttacaaccaatcagctattaggcc
cgtgatgtaatgtcagaagacattgcaatgctGTATATCGTGAACAGACA
TGCGTGTTTTCTTGATTCCCTGGTGGCTTCTCAATTTGTGATATTCCACT
TGAAACTTTCATTGCAGAGGCGGTGAACTTCCACCACGTGGTGAAGATGG
GGCACGTCATGACCATCACAGGTCGTCCTGTGTTCAGCAGCAATCGTACA
CTAGATATCGAAGTTTTCGTCGATTGTGAAGATCTGGTCGAAGGTTAGTC
TTTTTACAATCTTTTTGTCACGTTGCTTTCCATATTCATTGAAATAAATC
TATCGATCTATTCAGTATTCAAACTAGTTTTGACCTATTTTTACATcttt
aaaataacttttatatactaagagaaaatgaaaaagtaaaacagtTTTCC
GGTTTACTTTATTAAATTAATATATATTTAGAAAACACCCTATTCTTTTA
AATGCTCCCCTCGAAAAACGCCTTTctcaaaatccaaaaatttaatAGAT
ACAATAGGCAAATTTTTCTAATGATAATTAATTATGTTTCAAAGTACATT
ATCTCAacatattatgaatagattcTTTTTACAATGTTTGATTTATTTAA
TAACCAGGAAAAAGTTTCCGCGCGTGTTCGGCTACGTTCACATTCGTTGC
TTTGGATAAAGACAGACGTCCTCAAATGATCCCAGAGTTGAAGGTGGAGA
CAGATATCGAAAAATTGCGCGCAGAACTCGGAAGAAAACGTTATTTAGCG
AAGAAAGAACAACGTAAAAGAAAAGCCGACGTAGCGAAGTTAGATAAGCC
GCCTTCTACTGAGAGACAAATGTCCATCAATTGA Coding sequence (CDS) from alignment at sc0000042_pilon:1414450..1417533+ >XLOC_037565 ID=XLOC_037565|Name=XLOC_037565|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2160bp|location=Sequence derived from alignment at sc0000042_pilon:1414450..1417533+ (Clytia hemisphaerica_ch_hm2_pilon)
aTGATGGATAACAAAAATATAGAAGTCAGTCGTGTGATGTTACCGGATGA
TTCCAATCTTGCTGGTAATGTTCACGGTGGAAGTATTTTGAAATTGATCG
AAGAAGCTGGCGAAATTATCGCAACAAGGCATTGCAATAAAAACAGACCA
GaTGATGGATAACAAAAATATAGAAGTCAGTCGTGTGATGTTACCGGATG
ATTCCAATCTTGCTGGTAATGTTCACGGTGGAAGTATTTTGAAATTGATC
GAAGAAGCTGGCGAAATTATCGCAACAAGGCATTGCAATAAAAACAGACC
AGgaCCTGAATGTTACGCAGCACTTGCAAGAGTAGAACGAACAGATTTCT
TAGAACCAATGTTTGTTGGCGAGATAGCGCAAATTCATGCTGAAGTCACT
TATGCTTCTGGTCACTCTCTTGAAGTTCAATGTACTGTTTACGCTGAGAA
TGTTGTGAAAGGCAATAGAAGATTAACTAATAGgaCCTGAATGTTACGCA
GCACTTGCAAGAGTAGAACGAACAGATTTCTTAGAACCAATGTTTGTTGG
CGAGATAGCGCAAATTCATGCTGAAGTCACTTATGCTTCTGGTCACTCTC
TTGAAGTTCAATGTACTGTTTACGCTGAGAATGTTGTGAAAGGCAATAGA
AGATTAACTAATAGAGCATCACTCTGGTACGTTCCATTGGCAATCGCTCC
ACCTCACGCAGTGACTCTCGTGCCGCCTTTGTCTTACAAGAGTGCTCAGG
AAGAAGAGAAAGGAAAGAAACGTTATGAAGCTCAAAAGACATCAAGAAAT
CAAGCATCTGATTCTCTAAATAGCATCACTCTGGTACGTTCCATTGGCAA
TCGCTCCACCTCACGCAGTGACTCTCGTGCCGCCTTTGTCTTACAAGAGT
GCTCAGGAAGAAGAGAAAGGAAAGAAACGTTATGAAGCTCAAAAGACATC
AAGAAATCAAGCATCTGATTCTCTAAATATCGACGATGAAGCATCAGCTC
CAGGAATGATCAATGTGTTGACACCAGCTGGTCGTAGTTTATGTGCACCT
TATTCGGTAAATTACTCACATTCATCGCTCATTGTTATGCTACATCCTTC
AGAATGCAATTCGTCTGGCTTTGCTTCTGGAGGTGCTACAATGAAAATGA
TGGATAATGTTGCAGGCATTGTTGCTACTAGACATTGTAAATCCATGACT
GTCACAGCTTCCGTTGATCGACGATGAAGCATCAGCTCCAGGAATGATCA
ATGTGTTGACACCAGCTGGTCGTAGTTTATGTGCACCTTATTCGGTAAAT
TACTCACATTCATCGCTCATTGTTATGCTACATCCTTCAGAATGCAATTC
GTCTGGCTTTGCTTCTGGAGGTGCTACAATGAAAATGATGGATAATGTTG
CAGGCATTGTTGCTACTAGACATTGTAAATCCATGACTGTCACAGCTTCC
GTTGAGGCGGTGAACTTCCACCACGTGGTGAAGATGGGGCACGTCATGAC
CATCACAGGTCGTCCTGTGTTCAGCAGCAATCGTACACTAGATATCGAAG
TTTTCGTCGATTGTGAAGATCTGGTCGAAGAGGCGGTGAACTTCCACCAC
GTGGTGAAGATGGGGCACGTCATGACCATCACAGGTCGTCCTGTGTTCAG
CAGCAATCGTACACTAGATATCGAAGTTTTCGTCGATTGTGAAGATCTGG
TCGAAGGAAAAAGTTTCCGCGCGTGTTCGGCTACGTTCACATTCGTTGCT
TTGGATAAAGACAGACGTCCTCAAATGATCCCAGAGTTGAAGGTGGAGAC
AGATATCGAAAAATTGCGCGCAGAACTCGGAAGAAAACGTTATTTAGCGA
AGAAAGAACAACGTAAAAGAAAAGCCGACGTAGCGAAGTTAGATAAGCCG
CCTTCTACTGAGAGACAAATGTCCATCAATTGAGAAAAAGTTTCCGCGCG
TGTTCGGCTACGTTCACATTCGTTGCTTTGGATAAAGACAGACGTCCTCA
AATGATCCCAGAGTTGAAGGTGGAGACAGATATCGAAAAATTGCGCGCAG
AACTCGGAAGAAAACGTTATTTAGCGAAGAAAGAACAACGTAAAAGAAAA
GCCGACGTAGCGAAGTTAGATAAGCCGCCTTCTACTGAGAGACAAATGTC
CATCAATTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000042_pilon | genome | sc0000042_pilon:1414450..1417533 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 856-1080:2860 |
| Aaloc | 730-852:2370 |
| Aaloc | 490-726:1669 |
| Aaloc | 334-489:847 |
| Aaloc | 154-330:408 |
| Aaloc | 1-150:1 |
|
