XLOC_037493 (mRNA) -

Overview


Name	XLOC_037493
Unique Name	XLOC_037493
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000080_pilon:812124..816810-
coding sequence from alignment at sc0000080_pilon:812124..816810-

mRNA from alignment at sc0000080_pilon:812124..816810-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_037493 ID=XLOC_037493|Name=XLOC_037493|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4687bp|location=Sequence derived from alignment at sc0000080_pilon:812124..816810- (Clytia hemisphaerica_ch_hm2_pilon)
ATGTCATACGACAAATTTCAGAAGCTCTTTGATCTCAGAACAAAGTTATT
TCTTCAATTATGGAAAGAAAAGAAAATGCAAAAAGTAAGTTTTTAAAAGG
TGACTCAACTCTGACTTGGCTTTCATTTTAACTTTTTCAGTTTTCATTAA
AGAACTTTTTCCCAATACAATGTATTTTATTAATTATATCGTTAAGAAGT
GTTACAAAAATCGACCAGTTACATACTTCACACATAAAATAATTTGACAG
CACAATTTCTAATTTTTTGTAAAATTTTTATCTGATTAATTTTTGTCTTT
TATCTAGTCAAAAGCACTGAAAGAGTCAAGGCCATATTTAAATGATCTCA
TGATGAAGTTTTGTAAAGAACGTAAAATTAATCCTGAAAATTTGAAATGC
AAAACAACGTTCAGTGAAGCAAAATCCATGGTGAAATGGCCTTCACTTCT
TGATACTGAAACGATCAACAAAGACCAAGAGGATGTTCAAAACGTCAGAT
ACTACAAGAAGCATCTTAGAACCATTATCCCGTTTGATGTGATGAAAGAT
TTGGAAGGCGACAAAGAATCGCTGTTACAGCAACTGCAAAGAGAAAATTC
CAGACTTCCTGAACGAGAAAGGAAATGGGGGGTAATAAGTCATTTAGTTT
TTTTTAAATATAAGTAAGTTGATATTGTCTAATTTTATTATTTTAAAACT
TTTTCTAAAAAAATAATTGAAAAATCAATATTATTTCTTTTAGACTGCCA
TTGTTTATGTAGCTAATCGATACTTCAGAGACTTGTTGGAAGCCTTCTTG
AACAAGAACAATTTCTCCATGTATTACTTCATCCAAATCAACGACAAGAA
ACAAAAGCTCCTTGAAAAAAGACGAAAGGAGAAAGCAGCCTTAAAGGAAG
AGATGGATGAAGTGAATTGGTATGATGTTGATGATGGTAGTGATGAGGAA
GTGGAAGTTGTGGAAGAAATACCTGAAGAAGATCCGGAAGAACGAGAATT
CTGGAGTGTTGAAAAATCCACTGAAAGAGAGACGTCAAATGTCAATGATG
GTTTAACCCTGGATGATTTGCCCAACGATTATAAATACAGATATTACAAT
TTTGAAGAAGTCAAAATGATAGTCAACTCGCAAAAAAGGTTCAAACAATT
GAATCTTCAAATGAATAAGTATGTTTATTTAGTTTCTTATGGCTTAATTA
AAGGGACCATGCTTTTATTTTGCGTGGTGTCAAATTATAGAATTAGAAAC
AGTTTAGCATCAATCCCAAAAAACCTTTAGAGAAGAAATTTGGCAGAAGG
AAGTTTTGGCAAATTTGGTGAATTGCCTCGAAAGTTCGCCAAAATTTTTT
TGCCAAATTTAGATATATAGACCACTCGCCAAAGTTAGTTCTCCCCAAAT
TTAGAAATTTTATTAAATCGCCAAAATTAATTCCGCCAAATTGCAACAAA
ATTGGCAAATGGGCTCATTTGCCAAAATTTGTTCCGGCCAAAATTTCTTC
TCTTAAGGTATTCTATTGACAAGTTTCACAATGAATGCAACTAAAAGCTT
CTTTGCTCTTGCATTTCTAGATATTTATCTCAATTGTCAGGGAAGCCAGG
CTCAAAGTACAATCCAGAACTGCCCGACAACGCTACAAATGACGATGTAA
GTTTATTTTTATCTAAGTAAATAGTTAGGTTTTTTATGTTCTTGATTTCT
TTGTCAAAAGGTTGCTAAAAACCCTTTGAGCACTTCAAGGGGGGAACTAA
TATTTGCTACAACTAATCTTGGACCACAAATAAATTGCTGTCTCACCAAA
ATTAAAATTTTTGCTATAGCTCTTCCCAAAAATTACCTTTTTTGTGATTT
TTTAAATTTTAAAGGGAAAGGAACTGACTTACCATGTCATTCCCTAAAAT
TAGTTCTTGTCAAAGTTAGTTACCTTAAGGTAACTATACCTTTAAGACTT
TTCAATGCAATATTTTGCTGACTATAACTTTCTGTAACTTTTATAGATTC
TCAACCAAAACTTGACCAATGTTAAATACTATGAGTTATTGAAGTATGAA
TGCGATAAAATGGGTGTACCATTATCAGAGTTGGACCGGATCAATTTAGA
GCATTACCGCAAGAACGGTGACAAACGAAAAGTGACTGGAACAAAGGAAA
GTCAAAGTCGGCAACCTCCAGGAGAAGAAATTGCACTTTTTGGAGGAACT
TCAAATCCTTCTTCGCCTTCTCAAGTGAAAAAAGAAAAACGAAAACTCTG
GTATTTTGATCAAAACTCAAAAGCAAAGATTCATAAAAAGAATGTGGAAA
AGACTCATTCAGCAAACGTTCAAAAATATAATAATGCTGTCAAAGCAAAT
AAACATCATCAAGAAGAAACTTCCACTATCGAACAAGAAGAAACCTCAAT
TGCTACTCATGAAGAAACCTCAACTGCTACTCAGGAAGAAATCTCAACTG
CTACTCAGGAAGAACAAATAGAATATTATACATTAGGAATCTTGCCAAAA
GACATTCATATTGAGTATCAAGCAAAGAAAATTCATTATTATCAGAAAAA
GATCCAACAGTTTGGTGAAGCTGAAAGTGTGAAACAGGTAAACTTATTTT
CAATTCATTTCCCAAATAATAATTACATTATAGGAAGAAATTTTGGCAGG
AAGAAAATTTTGGCGGATTGGACAGATTTGGTCAAAAATCTGCCAAATTA
AGTTCCTGCCAAATTTAAGTTGCTCTATTTATTCCCCCAAACATGTGCTA
TTTCGGGCTTTGAAACAAGTGTTTCCTTTTTAATGGCATTTTTTGGACAA
AAATGTCCTTCGTCCGCCAAATTAAATTCCTGCCAAATTTAATTTTTCAA
GTTAACCGCCACTCTGAAAAAACTTTTTTGGCCATCCGCCAAATTAAATT
CCCACCAAAATTTCTTCCTTTAACGTATGTTGCTTGACCTAAAAAAGAAA
AAAATTGATGATAATTAGGGCCAAACTTAGGTACAGGACTATTTTGACTG
TCATCTCTAACTGTATATGCTTCAATTCACCACATAATGACTTTTTTAGC
ATTGGAAAAACCGTTCAGTTCAATATTTCAATGAGCTTGTTGAGATTTAT
TGCTCTAAGCACAACATCAAACTAACAGATGTCATCCGAAACGGTTGCTT
CAAAGACGAGATCAAAAAGACTTACAAGAGGCATCATGAAAACTATGACA
TAGCCACCACAGATGAAGGTAATGCCAAACGTTCAAAACTGAAAAAATCT
GAAGAACAACCCAACCGCCAGAAACTTAGCACCAATAACACAAACATTGA
ATTAAGTGCTGGGATCCTATTGGTTGATAACCCAAAACCCATCTCCAAAG
AGGAATGTAAGGTTGAAGGCATTCAGTACACCTATGGTATGGACATTAAT
GTATATCCAAGGAGTAAACAACCTTTCACTCACAGGATGATTGCTTATTC
CTTAAATGAGATGAGAGGTTTGATCCCTGATGAAGTGATTGAAGAATGTA
AACAAAAACAAAGGATATACGAAAACAGGAAAAATGAGATGGTGAAATAT
TCATCAGATGATACACAGAAAGCTGTCAGAAAGGTATCTTTTGTTATGAA
AGTGATCTTTTGTTATGAAAGTGATTTTCAGAGGTATTAATAAATTTGAT
ATGAGATCAAAGCTCTCATAAATAAAGTGAAACCTGCGTAAGCTTTTCAT
ACAATTTGCAGTATTTTGAAATATAAAATAAACCCTTAGTTTGAAGTCAT
TTACTTGGTCCCAGTTTTTAAGTAGATAGTTATTGTGTTATGGATTTTAA
AATAATGGTTAATCTATAATCATTAATTTCCCTGTACTGTTGCTGTTTAA
TCTTGGTAAAATTTAAGATCACCCTCATCATGATAATCATTGTAAGACTT
TTACTTTTTATCGTTTTGAAAGATTAGTATTCACTTCTTTCTAATTCTTT
TCTTTTAGGATGCAATGATATATTTCAATGAACTGATTGAAAATTATTGC
CGTGAAAATAACATAGACATGCAGCTGTTCTCGGAAAATCGTCGCGTCAG
AAATAAAATACGCAGTGATTACAGACAACCAATACAAATTGGTTTTATAG
AGGATTCCAATGATTCAAATCAAATCAATAATGATCATAGTAAAGACTTT
GGTGAAAATCAAAGCTCTGAAATAATTGATCAAGGTATGACCAATTTAGT
TGGTGATGAAGTTTACGATGCTGCCTATGGACCTCCCAGTAATCAAAGGA
AACATCGACCTCCTCAAAGAACACAACCTCAAAGAGAGGTGATGGAGTCT
GATAAAACAGTGCATAAGCCAATCAAATTTGGTAAAGGAGTACCTCTAAA
GAAGCATAACCAGCCTTTCCAAAAGGAAGTTGAACTTCCAGTCAAAAAGG
TTTTCCCTGCTGCTCAAAAGGATAAATCAGCAAAACTTTCTCAACTTCAG
AAAGTTGAAAAGTTTCCTATAAAAGATGAGATAACACTGTCTCAAGAAGA
AGACACTGGAACTCCTGAAGAGTCAAATGACGAAATAACAGATTCCAAGG
AATCTGACAAAGCCAAAGAATTAGAATTAGAAGCAAAAAATGAAAAAATC
AGATTGAAAAGATCTGAGAAAGAACAAGCTTATACAGAGAAAGCTTCAGA
AAGCTCTGGCAAAGCACGATTTACTTCTTGGTTTTAG

Coding sequence (CDS) from alignment at sc0000080_pilon:812124..816810-

>XLOC_037493 ID=XLOC_037493|Name=XLOC_037493|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5526bp|location=Sequence derived from alignment at sc0000080_pilon:812124..816810- (Clytia hemisphaerica_ch_hm2_pilon)
ATGTCATACGACAAATTTCAGAAGCTCTTTGATCTCAGAACAAAGTTATT
TCTTCAATTATGGAAAGAAAAGAAAATGCAAAAAATGTCATACGACAAAT
TTCAGAAGCTCTTTGATCTCAGAACAAAGTTATTTCTTCAATTATGGAAA
GAAAAGAAAATGCAAAAATCAAAAGCACTGAAAGAGTCAAGGCCATATTT
AAATGATCTCATGATGAAGTTTTGTAAAGAACGTAAAATTAATCCTGAAA
ATTTGAAATGCAAAACAACGTTCAGTGAAGCAAAATCCATGGTGAAATGG
CCTTCACTTCTTGATACTGAAACGATCAACAAAGACCAAGAGGATGTTCA
AAACGTCAGATACTACAAGAAGCATCTTAGAACCATTATCCCGTTTGATG
TGATGAAAGATTTGGAAGGCGACAAAGAATCGCTGTTACAGCAACTGCAA
AGAGAAAATTCCAGACTTCCTGAACGAGAAAGGAAATGGGGGTCAAAAGC
ACTGAAAGAGTCAAGGCCATATTTAAATGATCTCATGATGAAGTTTTGTA
AAGAACGTAAAATTAATCCTGAAAATTTGAAATGCAAAACAACGTTCAGT
GAAGCAAAATCCATGGTGAAATGGCCTTCACTTCTTGATACTGAAACGAT
CAACAAAGACCAAGAGGATGTTCAAAACGTCAGATACTACAAGAAGCATC
TTAGAACCATTATCCCGTTTGATGTGATGAAAGATTTGGAAGGCGACAAA
GAATCGCTGTTACAGCAACTGCAAAGAGAAAATTCCAGACTTCCTGAACG
AGAAAGGAAATGGGGGACTGCCATTGTTTATGTAGCTAATCGATACTTCA
GAGACTTGTTGGAAGCCTTCTTGAACAAGAACAATTTCTCCATGTATTAC
TTCATCCAAATCAACGACAAGAAACAAAAGCTCCTTGAAAAAAGACGAAA
GGAGAAAGCAGCCTTAAAGGAAGAGATGGATGAAGTGAATTGGTATGATG
TTGATGATGGTAGTGATGAGGAAGTGGAAGTTGTGGAAGAAATACCTGAA
GAAGATCCGGAAGAACGAGAATTCTGGAGTGTTGAAAAATCCACTGAAAG
AGAGACGTCAAATGTCAATGATGGTTTAACCCTGGATGATTTGCCCAACG
ATTATAAATACAGATATTACAATTTTGAAGAAGTCAAAATGATAGTCAAC
TCGCAAAAAAGGTTCAAACAATTGAATCTTCAAATGAATAAACTGCCATT
GTTTATGTAGCTAATCGATACTTCAGAGACTTGTTGGAAGCCTTCTTGAA
CAAGAACAATTTCTCCATGTATTACTTCATCCAAATCAACGACAAGAAAC
AAAAGCTCCTTGAAAAAAGACGAAAGGAGAAAGCAGCCTTAAAGGAAGAG
ATGGATGAAGTGAATTGGTATGATGTTGATGATGGTAGTGATGAGGAAGT
GGAAGTTGTGGAAGAAATACCTGAAGAAGATCCGGAAGAACGAGAATTCT
GGAGTGTTGAAAAATCCACTGAAAGAGAGACGTCAAATGTCAATGATGGT
TTAACCCTGGATGATTTGCCCAACGATTATAAATACAGATATTACAATTT
TGAAGAAGTCAAAATGATAGTCAACTCGCAAAAAAGGTTCAAACAATTGA
ATCTTCAAATGAATAAATATTTATCTCAATTGTCAGGGAAGCCAGGCTCA
AAGTACAATCCAGAACTGCCCGACAACGCTACAAATGACGATATATTTAT
CTCAATTGTCAGGGAAGCCAGGCTCAAAGTACAATCCAGAACTGCCCGAC
AACGCTACAAATGACGATATTCTCAACCAAAACTTGACCAATGTTAAATA
CTATGAGTTATTGAAGTATGAATGCGATAAAATGGGTGTACCATTATCAG
AGTTGGACCGGATCAATTTAGAGCATTACCGCAAGAACGGTGACAAACGA
AAAGTGACTGGAACAAAGGAAAGTCAAAGTCGGCAACCTCCAGGAGAAGA
AATTGCACTTTTTGGAGGAACTTCAAATCCTTCTTCGCCTTCTCAAGTGA
AAAAAGAAAAACGAAAACTCTGGTATTTTGATCAAAACTCAAAAGCAAAG
ATTCATAAAAAGAATGTGGAAAAGACTCATTCAGCAAACGTTCAAAAATA
TAATAATGCTGTCAAAGCAAATAAACATCATCAAGAAGAAACTTCCACTA
TCGAACAAGAAGAAACCTCAATTGCTACTCATGAAGAAACCTCAACTGCT
ACTCAGGAAGAAATCTCAACTGCTACTCAGGAAGAACAAATAGAATATTA
TACATTAGGAATCTTGCCAAAAGACATTCATATTGAGTATCAAGCAAAGA
AAATTCATTATTATCAGAAAAAGATCCAACAGTTTGGTGAAGCTGAAAGT
GTGAAACAGATTCTCAACCAAAACTTGACCAATGTTAAATACTATGAGTT
ATTGAAGTATGAATGCGATAAAATGGGTGTACCATTATCAGAGTTGGACC
GGATCAATTTAGAGCATTACCGCAAGAACGGTGACAAACGAAAAGTGACT
GGAACAAAGGAAAGTCAAAGTCGGCAACCTCCAGGAGAAGAAATTGCACT
TTTTGGAGGAACTTCAAATCCTTCTTCGCCTTCTCAAGTGAAAAAAGAAA
AACGAAAACTCTGGTATTTTGATCAAAACTCAAAAGCAAAGATTCATAAA
AAGAATGTGGAAAAGACTCATTCAGCAAACGTTCAAAAATATAATAATGC
TGTCAAAGCAAATAAACATCATCAAGAAGAAACTTCCACTATCGAACAAG
AAGAAACCTCAATTGCTACTCATGAAGAAACCTCAACTGCTACTCAGGAA
GAAATCTCAACTGCTACTCAGGAAGAACAAATAGAATATTATACATTAGG
AATCTTGCCAAAAGACATTCATATTGAGTATCAAGCAAAGAAAATTCATT
ATTATCAGAAAAAGATCCAACAGTTTGGTGAAGCTGAAAGTGTGAAACAG
CATTGGAAAAACCGTTCAGTTCAATATTTCAATGAGCTTGTTGAGATTTA
TTGCTCTAAGCACAACATCAAACTAACAGATGTCATCCGAAACGGTTGCT
TCAAAGACGAGATCAAAAAGACTTACAAGAGGCATCATGAAAACTATGAC
ATAGCCACCACAGATGAAGGTAATGCCAAACGTTCAAAACTGAAAAAATC
TGAAGAACAACCCAACCGCCAGAAACTTAGCACCAATAACACAAACATTG
AATTAAGTGCTGGGATCCTATTGGTTGATAACCCAAAACCCATCTCCAAA
GAGGAATGTAAGGTTGAAGGCATTCAGTACACCTATGGTATGGACATTAA
TGTATATCCAAGGAGTAAACAACCTTTCACTCACAGGATGATTGCTTATT
CCTTAAATGAGATGAGAGGTTTGATCCCTGATGAAGTGATTGAAGAATGT
AAACAAAAACAAAGGATATACGAAAACAGGAAAAATGAGATGGTGAAATA
TTCATCAGATGATACACAGAAAGCTGTCAGAAAGCATTGGAAAAACCGTT
CAGTTCAATATTTCAATGAGCTTGTTGAGATTTATTGCTCTAAGCACAAC
ATCAAACTAACAGATGTCATCCGAAACGGTTGCTTCAAAGACGAGATCAA
AAAGACTTACAAGAGGCATCATGAAAACTATGACATAGCCACCACAGATG
AAGGTAATGCCAAACGTTCAAAACTGAAAAAATCTGAAGAACAACCCAAC
CGCCAGAAACTTAGCACCAATAACACAAACATTGAATTAAGTGCTGGGAT
CCTATTGGTTGATAACCCAAAACCCATCTCCAAAGAGGAATGTAAGGTTG
AAGGCATTCAGTACACCTATGGTATGGACATTAATGTATATCCAAGGAGT
AAACAACCTTTCACTCACAGGATGATTGCTTATTCCTTAAATGAGATGAG
AGGTTTGATCCCTGATGAAGTGATTGAAGAATGTAAACAAAAACAAAGGA
TATACGAAAACAGGAAAAATGAGATGGTGAAATATTCATCAGATGATACA
CAGAAAGCTGTCAGAAAGGATGCAATGATATATTTCAATGAACTGATTGA
AAATTATTGCCGTGAAAATAACATAGACATGCAGCTGTTCTCGGAAAATC
GTCGCGTCAGAAATAAAATACGCAGTGATTACAGACAACCAATACAAATT
GGTTTTATAGAGGATTCCAATGATTCAAATCAAATCAATAATGATCATAG
TAAAGACTTTGGTGAAAATCAAAGCTCTGAAATAATTGATCAAGGTATGA
CCAATTTAGTTGGTGATGAAGTTTACGATGCTGCCTATGGACCTCCCAGT
AATCAAAGGAAACATCGACCTCCTCAAAGAACACAACCTCAAAGAGAGGT
GATGGAGTCTGATAAAACAGTGCATAAGCCAATCAAATTTGGTAAAGGAG
TACCTCTAAAGAAGCATAACCAGCCTTTCCAAAAGGAAGTTGAACTTCCA
GTCAAAAAGGTTTTCCCTGCTGCTCAAAAGGATAAATCAGCAAAACTTTC
TCAACTTCAGAAAGTTGAAAAGTTTCCTATAAAAGATGAGATAACACTGT
CTCAAGAAGAAGACACTGGAACTCCTGAAGAGTCAAATGACGAAATAACA
GATTCCAAGGAATCTGACAAAGCCAAAGAATTAGAATTAGAAGCAAAAAA
TGAAAAAATCAGATTGAAAAGATCTGAGAAAGAACAAGCTTATACAGAGA
AAGCTTCAGAAAGCTCTGGCAAAGCACGATTTACTTCTTGGTTTTAGGAT
GCAATGATATATTTCAATGAACTGATTGAAAATTATTGCCGTGAAAATAA
CATAGACATGCAGCTGTTCTCGGAAAATCGTCGCGTCAGAAATAAAATAC
GCAGTGATTACAGACAACCAATACAAATTGGTTTTATAGAGGATTCCAAT
GATTCAAATCAAATCAATAATGATCATAGTAAAGACTTTGGTGAAAATCA
AAGCTCTGAAATAATTGATCAAGGTATGACCAATTTAGTTGGTGATGAAG
TTTACGATGCTGCCTATGGACCTCCCAGTAATCAAAGGAAACATCGACCT
CCTCAAAGAACACAACCTCAAAGAGAGGTGATGGAGTCTGATAAAACAGT
GCATAAGCCAATCAAATTTGGTAAAGGAGTACCTCTAAAGAAGCATAACC
AGCCTTTCCAAAAGGAAGTTGAACTTCCAGTCAAAAAGGTTTTCCCTGCT
GCTCAAAAGGATAAATCAGCAAAACTTTCTCAACTTCAGAAAGTTGAAAA
GTTTCCTATAAAAGATGAGATAACACTGTCTCAAGAAGAAGACACTGGAA
CTCCTGAAGAGTCAAATGACGAAATAACAGATTCCAAGGAATCTGACAAA
GCCAAAGAATTAGAATTAGAAGCAAAAAATGAAAAAATCAGATTGAAAAG
ATCTGAGAAAGAACAAGCTTATACAGAGAAAGCTTCAGAAAGCTCTGGCA
AAGCACGATTTACTTCTTGGTTTTAG

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_037493	XLOC_037493-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000080_pilon	genome	sc0000080_pilon:812124..816810 -

Properties


Property Name	Value
Aaloc	2035-2763:730
Aaloc	1501-2034:1639
Aaloc	910-1500:2692
Aaloc	835-909:3117
Aaloc	409-831:3945
Aaloc	85-408:4381
Aaloc	1-84:4688

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XLOC_037493 (mRNA) -