XLOC_037460 (mRNA) -

Overview
NameXLOC_037460
Unique NameXLOC_037460
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000080_pilon:401075..411033+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_037460 ID=XLOC_037460|Name=XLOC_037460|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=9959bp|location=Sequence derived from alignment at sc0000080_pilon:401075..411033+ (Clytia hemisphaerica_ch_hm2_pilon)
CGACAAACGATGcacttttttaaatacttttccCCTCTAAGTAATACATG GTTGTTTCTTGATGATTTAAGAGAAGAGAAACAAGAAACAGAGGGAAGGA AATTGGTAGAAAAGATGTTGCgaccaaaaaaatttattggtaTTGCCATA TTGTTATTATTGggattttatcatattttttacaCTGGTGCTAATGTTGA TTTGACTCTATTCAAAACTTCCAAAGCAATAAAAAATGTGAAGTTCGTTG AAAAAGAACGAATACACGAGTCATACAAGGCAAAAAAGAAGATTGTTAAT GAAGTTGCTGCAAAGAAAGGTATATTATGATGAATTTATAACAATATTTC ACGACTCATAAATCATCTAGTAGGTCTACAGTATTCTACAGTAtcttttt gactttcttttgacttttctcaaactttcattttcactttttcccGACAA AAACGGCCATCGCCCTCGGGCGCCCAATATTTTCCAACGAAGTTTTTCCA AAAACGCCCACCGCCCATAGattttgctccacccatccgcctattcaaga atctttttgactttttcaagactatttttttactttaatttgactttttt gacttttttgactttttgtagaggtgtacGATAGTTTTTCAAGTGCTTTG CCCGGGGGtgtcattttcttgaaaatcctTGTCCATTTTGAAGCACAGat tggtcagattttccaaagtTTGACCCGAAAACTccgtttttctcattttt tacgCCCTTAGAGTGTACTTTCTCGCATTTCAACTCGTACAGTGTACTTT GGCAAACCTTAAAAACGCATATTGAACAATTCAGTTACTTCAAGCGTATT TTACTTTATTCTCTCTTTTTGTACCCGAGTAGGCTCATAACACGAGGTTT CGTGGAATTAATGATGTTTAAACCCAAATCTGTTAAAGAAGTTTGTTTTA ATCCAATTACGTGCTGCATACTGTACCGTGGCTGATCAATACGTCTATTA TATGCTATGAGGATACTATAGTACATAAGTTGGCCGTCCTACGTAAATTT ACTACATGACAAACTCTCCTGGGAGATTTTTAAACTACCAACCGAGAGTT CAAATTACCAGGCGAGAGTTTAGACATCCGGCCGGTAGTTTTAAATTATC GGCCGGTAATTTGAACTCTCGGCCGGTAGTTTGAAACTCTCGGCCGGACG TTTAAGACACGCGACCGGACGTTTAAAACAGAACACAAACACACTTGTCT AAATCAGCCACAGTAATACTGTGTAGGAAaaacaaccaaccaaatcatAT AGGAGCTTGTTAAAACTCCAGTTTGTCCCAAATCTCTATAGATTTGTCTC CACTAAACCATCTTGActgctcaaaaaaaaaaaactttgtgaCTCTTTGT GAAATACGCTTTTAAAGTCtctccagatataattggcagtggaaacaaga atgcctgtaacttttgatagtcaaatataaatataaaatacGCTTTTGGA ATTGAAACAAGGGATGTAAACGTCCTTTATCCCGTCATATCTCCGCATCA AATTAGAAATacctttaagggaactaatttttgcgggaactaaattttgc ggttaTTGCAGATTTAGGCCCAAACCGTAAAATTTAGTTcccacaaaatt tttcaaatgcaaaaaacaaaggtcgaataattcacagtacggctttaatt ttctttctagtgagaaatccgcaaaattaagttcccgcaaatattaaata ttaaatcttgaactgcgaaccgcaaaaattagttcccgcaaaaaatagtt cccttaaggtttTGAGCGGTCGAGGTGGTTTTGTGCCCAACAAAATAAGA GGATACCTAGGTGAAACTTTAAAGGCGAACGAAACGAAATTAGACACCCG GGgagcaaaatactaaaaaatcaTGGtttttttGTGGTGTTTTGGTCAAT TTCTCCCTAATAGATTTAGCTTCTATGATAAAATTTTCGGGTATCTTTAA TTTCAGTCTTTCATCTGtctatctaagaaaaaattatatcGAAATCATTT ATGAAAGAAAAGTTATCAgcgattgaaaaaaaagttaaaatcgtAATTCT GCACAAGAGCAAAACTCACTTAAGAAAACTGAGAATGCACGCTGACAGGA AAAACATTTAGATTTTGACCGTGTTATATGCGTTGAAATGACACTATTTC AGACTAACTTTGCCCAGAAACGAAGCTATTGAAAGTATGAACCGTGATGT TGTAGAAAATTAGTGCAATTAGAGTAATTCCATTACTTTTGGCACCTATT GTAACTTTATCAGATCGCCTTTTAGATCTTTTAACGACCCatttcgaaat tttaagcaatgaCATTTAGGGTGGGTTTACATCTGTAGGGGAGAATCGAT TAACAACacacaaaaaaactcaaaatcacTTTTACGAATTCTTTTATAAA CATATCGATCTCGTTATTGCCATTGTTACAAAAGGTAGGTTTGGGTACCT CTAAAGACAAAGGACGTAACGATGAGAAAATCcattaagttttaaaaata aattgtgtaaagaaattttccaattccTTTTAAATGAGTAAATAATTGGA AAATGATTTCGATGACGATGATGACAACTACGCAAATGACTTTTTCAATA AAGCGTTACTATGCAACAtggtggtttttcactgagactgtctggcgaaa atcgattagctgaaacaaagaaaattgataggaaagcattactgactccc aaaacagttgtctaagcgtttacaaccctttgaatttgaagaaaatttta ttaaaaatcatcagcTCGCATATCAAAggatttagaattacagccttcta atgaacattttctgtgacaagattcctcgtcttttCTATCAAATCCATAC Acatgaaagtttgctcttcgactctatcggggaaaaaaaaacttttccca tacgaccaattttttacaaaagaatcccactgcacattctgctactttta tgACAATCAATTTATTTATGCTGTCTTTTTtgcttaattggtcattaagc caagagaggtctatccctctcttggagaacaaaaggtttaatgaccaatt ttcgacgttaaatctggaatgctgatatgaagcgatcaaaatctgatgtt aagcacgaatcctcattgtatattttttacaacccttagaaatttatgaa aaggaccgttgatgagaaccacttatctatctagcgtagtgaaaaagcac ccataGACTGATgaatatacagggtgtccctaattaaagtatcgagtcga aacacaactatgagtagaaagttttatgtgcgtgttcacaaaattgtatt ttaagctctccctcttttttctttgtcattacgattaatttgtacgttgt aactaccttttgtaataagcctgtgtgatggagaacgttcttatatttca gcgataacacacacaaacctttctactcaatcgcatgttcgatactttaa ttagggacaccctgtagaaaaACATAATATTCCCATTCTATAATAAAATT TGAACCATTCCGAAAGCTTAGGGAAAATTAACTATGACTTAAAAAAGGAA TTGGGATGGAATCAAAAGAAAACGTGCGATTATCATTGTATTccttacag tatgtggcccccaaaacggcgatcaaatttgaaatttctctcaaatctag aggaaaagagattttacaaaaatttttgctgcatgaaaacctttaacatc tctactttatttcctggaagttatttttcaaaattttcaatttcaacaat atttttcaatcgcttaaagatagatagcttttttctaatggcccccaaaa cggaggtttgaaattttagcgatttctcgagatatctttaagatatgaat acaaaattttgaccatagttttgaaatatgatttagagggttttgggtat aaatttatttgataaaatctttacagtatacccctggttgtcaaaatgca ggtttggggcccccaaattggaggtgtagttaaaatcaaattattaagcc cagtcgtaatagggggaaaaactatgaacatatttgtgttttcccttaga TTTACGACCctatggatgtaaaatttatgattttcatgaaatatttcaag attttcgatattgcaaagtccaaactgaaaaattagaaattttcaaaatg acaattttgatttaacaacgtcttaattaagtttttgaaaacaaatctta tttgaaaatagttccattcatgtatggaataagctgtgaaaattttagaa aaaaagcttaactgaaactgaaaatattaagctttaaagatatttttctc ctatattttgcaaaaaaatgacagaatttgccgtttttgctgattcagcg aaaaattttatttataatgttaattttttgttataaactattacctcaag gtgataggaatagaattccaagattttttgctttttctcatatttagaat tttcggttttgtcaatgctgattcgagggctccaaaatactggttgacct tcaagatgctatatcttttacccagcctctaaagtcacagatatatttgg attttctgaacggcattaggtgtagaaagtttcctatacccagttttcat aacttattttcaatatccaaggagctagagtgagttatatgcaattttta tctaatttgggtgttaaaatatttcctttagacgcaaaatatgttatttt gaatctgtctcaaaccatcaaaaacatgctcattttttagtatagctatc attttttcaaaataaacaaaaatcgtttaattctgataaatctacaagtc agaatcttcattttaatgaaaacctccgttttgggggccgtctccgtttt gggggccatatactgtaatcGATTCTCTCCTAGATGTAAACCCACCCTTA ACCCTTTGGTTTGATCgatttaatttgatttaaaattgatCATTTCATCT AAATTACTTGTTAcagcatgaaggtaataaagatatagatggagagaaaa cgtctcggtaatgatctaaatggtcgttgaaatcttttataaatctattc aaagcggcttttctttgatgtaccatcattggaagcaaaaaacatcaggg gggtttcaggggttaCCAGATTCCGCAATcccgccaattttttcttccga tttccgtcaaaccgtcttaaattgaaccaaaattccgtcaccgaaaattc ctttgaaattcaatatttttgtcgaaaattccgcaaatttggaatatctt ttaccaattccgaaattccgcaattttttttgctaaattccgtttttcca cactaaaattgtctaattttccgtctccgtcagagaacccaatttccgta attccgtctaaattttcgccaaattccgtcactccgtccgaaaaaagggc cgattccgctcctctgCCAAACGTGAAACAGAAAgagactgtttggttga ttttgaaaaacttaattttagcCTCTATCGATgactttatgggcagcttc ccctagaagtttggagtattgtgcttattagagcttattatgtgaagttt ttttcaatttttcatgacaaggctattatatttcaatattatacttgtta aaaatgtaatgtcttttcattcatcttaaatattcccacgagtataccca aaattaatcatcttattcccaaagcaaccaaacagctctttgcttccgat gataaatcagaatagaacaaaaggcattgactctccatctatctttatta ccttcatggttaTAGTACAAGCAACCACTTTTgtactagcctggatatcc aagctaaaaattttagaaaaaataagttttacctcagccagacaaagttc taaaataataaagcTTGGAATTAGGTGAACCcatgttgacagattttcct gcatgaatcccatggctgcaaataaatatatgcacataatgacatgcata atttcaagatggtaccccagcagtgataaatcaatttagaatggcagcct tgaccataaaacatagacagtgtggtggagtCTATTAGacagaaagtgca aagtgaattttggagaaaaagaatcatcaaaacaaaactttcaacccaaa acagcactacaaaattggcaaacagaaaagaagaattgaagcaaaataaa gatataccttttatagttttagttctttacacggtGCAACAAAGtcaata agaaaattaaaacatgatatctaagcaagtatgaaaagaaaacaaccaga acatctaaaaattcccatcttttgatcttcccacttcttccctaccatta ttgttatttttatttggatgcgtggtcaaacacccaagggagataattag gcattctattgttatttgcttcgaagaagaaaaatcagggagatttgcaa agcagcatACACGCCTTTCTGATCGCCTGCGCGATCCATCCAAATACTTA GGCGGacacttcaagtcggctcgcataatttctataCGCtcgccaccatt cagatctctgatttgCTTGgacccaaccaatcagaatatctgcataatca tcctcagataatcctcagatcagaatgcacacgatctaggtaaaccagac cgtaaatataagaaatcaaaaagaaaattacgggctggatatctaGGCTA CTTTTGTCCATGCAACAGATAGATAATGAAATTTCGAtatttattttaca atttttactcTGCCTGCGCTATTGATAGAAAACATAGCTTCAACATATTT ATTCTAGACGTTGGGATTTAAATTTTACTAGATGTAATAGTTAAAACAAT TTCTGATCTAAAATTTATCACTGATTTAAAATGTGTTGTGATAGTGAAGT GGAGACCCCCTTTTACCACCGTTgaaggaggggggggggcagtaaGATTC CACTTCCCAGACTAGATTCTAACGTAGGGTTTACTACATAAACCTTAACC ACTTACAATCAGGGTtctaatatttgagaaaaaaaagggaaattcccacg aaatcttgtGGCCACAAACGATTcggaagcgctctaacttatGTTGAAAG GGTTTTAACGCTAGTTTTAGGACTTGAAGatatccaaaagttcaaaaatg gtccaataagactcagaatatagcttggaagtcaatgaaCCCTTCCGAAC TGAAATATTTGATTACATTTAACAAATAGCCCAAAAGCAACTTTCTCACC CGagcttcaaatttcgaaaaacgaggaaataaccaATATGCTCAATACAG TGTGTTCTGCAAAATAGTAtactcaaaaaagtaaaatagaattatgaaaa gtttttaagCTTAACCAACTTAAATTCTAAATTTGCTGAAGACACATTTA TTCAGCGTTCTACAGTGCGAGAAGTCTTTGTTTTACAGATATAAAGCTTC AAGCACACCAAGTTGGagatttaaaaagatagaagaatagaaaagagatt ttcaaagcaaaaagctaaaacttttGATTGATAGCTCTCTCTATCTCTTa tgtcattttgataaaaatttcccaTTTTAATGGTCAAACTTATTCACCTT CCGAGTCGAATTTCTCGTTAGTGAAAAGCTGGTTGAATATAATTCTTTCA GCAATGAAAAGAAGGGACATTTTTCTTTCTGCTGCATATAAAATTAACTG TCTTAGACATTTCTACCTTTTGCAAATTAACGTTAGTTATGACTTATCAT AGCTTACTCTGGAGTAACTTACTCCATTTTcaatgtttaaaagttttgca CCCTTGAGTACTTAAAACTTGATATCTCTTAAACTAAAAAACCTTctgaa gaacatttttaagcacAGAGAGCTGAATAGCTACACTTTCAGCTATACCA AGAATTGAAATTATTTGtttagtcatttttttcaaagaactaCCTTAGTT TTTAAACATACTTTTTTGCGGAACACGCTGTATATTTCAAAGCAGATTGT AGGAGGCTCAGAAAACCCGAAGTTAGAGAGACCCCCGAATTAGAAAAACC CAAGCTACGACAAATATGTCCCCCAAAAATATACTCAAAAATGTGAAAAC TAACTTTTGAAAGaacttttcgagtttttttgaatttatgacgtcatatt ttggCACAAGTCATTAGACaaaaaaaaGATCAGAATAGTGAGTATCTATA GATAAATCGCGTCGACGGACGAATTTTCTCTAGCCTTCTTTCGCACCACG CCACTGTTTTACAGGCTGATCGGAAAGCAAGCTAGACTTTCCCCGCAATG AAATGAACTTTGCTTCCAGAACGAATTTCCGCTTGATTTTCCGCTTGATT TTCCCTTCTAGAAGCAAAGCAGATATAATACACGGGATAAGTTTAGCTTG CTTTCCGATCAGCCTGTAAAAAAGTACCGTGGTGCGAATGAAGGCTAGAg aaaattcgtccgtcgtcgtgatttatcTATAGATACTTAACCTATCGATA TTAACTTCACTATTGACAGTCGTTCCTCTACCAAACTTGTTATAGGCTTA GCTAACATTAACATAGggaaattatattttcttcCATCACTCTGCATAAT CATTGACGTATTTTGTACCAGATTGTATCTAACGTAAACGTAGCATaact ctacggcaatgaattttaaagttttcgTAGATATCGAGCCTGTTTAAGAC AACTTTTGGTGTTTAAATTGAATTAAAGGCTGGGAAATGTTTACCAGATA GGCATATCAAATAATTTTactttcagctcaaaaaatatAGGTGTAACGGC GTAACCGTTTTGCGGTAATATTATAGGAATATGTAGTGACGTAACTACTC TCCCTTTATTGTTTCAGGTACGGTCGATCGAGCACCGACAAGTCTTCATG ATTCACTTGTGTTCCCTTCAACTGCAAATGATTTTACTTCAAAATTAGAA TACGCTTATTCAAAGAGTGGACAAGACTTGAAAGTCTTACAAAAAGAAGT AGAAGAAAGACGATCGAAGCTTGTACGTAGTCCACTTTACGGCGAAGATC AATCGTGTAAGAATAATAATCGAATCGCTGGACTTACCAAATTGTTTGAT GCATGGGCACATATGGCAAAATTGTTTAATATTCGATATTTTATCGTATA TGGATCGCTGATCGGAGCGGAGAGAGATCGTAAGTATTCTTTAACCTGAA CTGAAAATATTCGGTATTGAAGTAACTGTAACTTATTTATCTAAGAGCGA CACGAAAAATTTTAGTACAAATCTTTTATcgcgtcatccagtctatcaaa aagctttaagtggaccccgggctaatcATGAATACAATAGACCACTAAAG AATCAACCAGAGCAACGTATTTCAACTGTATTGGACCACTTACATTACAA CCAGTTAATAAAGCTTTGTAtggcaattttgttttgatgatgagCGCATG GAGGAAGTCAAGAAAGAATTCTGGACAAAGAAGCTTCAAATAAGGCTCTA TAATcgttaaaatcttaaaatatataGTTTGGTTgatagacaggagaccc gttctgtatttttttataatcttctatatacaggacgggtatgacctaTG AGgaagatttctgcctcaaaaaatttatagcgggaaattcgaatttagcg ctgtcctcacttactaaaataaaaaccaaatttagGACCTTGCGCTTTCT CTATGAATGTGACCAGTAACAGAATAACAAATTTTGATtagctgtgtttt caaccgtcattTGGATCTAAGAAATTCAAACTCctagcccataccatgct atgtATTTCGCtatcagtatataaaataagaaatcatagcatggatctcc aggctaagaTATCTAATATTCTAAATTCCTAAATATAATTTCCATTATTA CTACAGGTAACATCGTCCCGTATGATTTAGACGACGACGTTATGATGTCA GAAGATGAG

Coding sequence (CDS) from alignment at sc0000080_pilon:401075..411033+

>XLOC_037460 ID=XLOC_037460|Name=XLOC_037460|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1368bp|location=Sequence derived from alignment at sc0000080_pilon:401075..411033+ (Clytia hemisphaerica_ch_hm2_pilon)
CGACAAACGATGcacttttttaaatacttttccCCTCTAAGTAATACATG
GTTGTTTCTTGATGATTTAAGAGAAGAGAAACAAGAAACAGAGGGAAGGA
AATTGGTAGAAAAGATGTTGCgaccaaaaaaatttattggtaTTGCCATA
TTGTTATTATTGggattttatcatattttttacaCTGGTGCTAATGTTGA
TTTGACTCTATTCAAAACTTCCAAAGCAATAAAAAATGTGAAGTTCGTTG
AAAAAGAACGAATACACGAGTCATACAAGGCAAAAAAGAAGATTGTTAAT
GAAGTTGCTGCAAAGAAAGCGACAAACGATGcacttttttaaatactttt
ccCCTCTAAGTAATACATGGTTGTTTCTTGATGATTTAAGAGAAGAGAAA
CAAGAAACAGAGGGAAGGAAATTGGTAGAAAAGATGTTGCgaccaaaaaa
atttattggtaTTGCCATATTGTTATTATTGggattttatcatatttttt
acaCTGGTGCTAATGTTGATTTGACTCTATTCAAAACTTCCAAAGCAATA
AAAAATGTGAAGTTCGTTGAAAAAGAACGAATACACGAGTCATACAAGGC
AAAAAAGAAGATTGTTAATGAAGTTGCTGCAAAGAAAGGTACGGTCGATC
GAGCACCGACAAGTCTTCATGATTCACTTGTGTTCCCTTCAACTGCAAAT
GATTTTACTTCAAAATTAGAATACGCTTATTCAAAGAGTGGACAAGACTT
GAAAGTCTTACAAAAAGAAGTAGAAGAAAGACGATCGAAGCTTGTACGTA
GTCCACTTTACGGCGAAGATCAATCGTGTAAGAATAATAATCGAATCGCT
GGACTTACCAAATTGTTTGATGCATGGGCACATATGGCAAAATTGTTTAA
TATTCGATATTTTATCGTATATGGATCGCTGATCGGAGCGGAGAGAGATC
GTACGGTCGATCGAGCACCGACAAGTCTTCATGATTCACTTGTGTTCCCT
TCAACTGCAAATGATTTTACTTCAAAATTAGAATACGCTTATTCAAAGAG
TGGACAAGACTTGAAAGTCTTACAAAAAGAAGTAGAAGAAAGACGATCGA
AGCTTGTACGTAGTCCACTTTACGGCGAAGATCAATCGTGTAAGAATAAT
AATCGAATCGCTGGACTTACCAAATTGTTTGATGCATGGGCACATATGGC
AAAATTGTTTAATATTCGATATTTTATCGTATATGGATCGCTGATCGGAG
CGGAGAGAGATCGTAACATCGTCCCGTATGATTTAGACGACGACGTTATG
ATGTCAGAAGATGAGGTAACATCGTCCCGTATGATTTAGACGACGACGTT
ATGATGTCAGAAGATGAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_037460XLOC_037460-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080_pilongenomesc0000080_pilon:401075..411033 +
Properties
Property NameValue
Aaloc634-684:9909
Aaloc322-630:8870
Aaloc1-318:1