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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000021_pilon:1560823..1566631+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_037136 ID=XLOC_037136|Name=XLOC_037136|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5809bp|location=Sequence derived from alignment at sc0000021_pilon:1560823..1566631+ (Clytia hemisphaerica_ch_hm2_pilon)
AGAATTGTAACATCGTCATGGAATATTGCTGGTCTATCTCCAAAAGATGA
GAATTTAGATGAGTGGTTACATTTGTTAGAAGATCACCATGATAAACTTT
CTGATGTCTTCGTTGTTGGGTATaatatcatttttctttttcatacaaAG
TTTCATTCGCATTGGCAACTGAATACCCAATTGTCTTGAATCTTATTCTC
ATAAGGAATCGTCTATCATAAGAtggatgtttttcaaaaaattactaTTG
GTTTTATTTGTTGGAATTTTAGTTCGTCTACGGCAAACTAAAAACACAAA
TTCGCCCTAGAAGTATATTTGATACCCTTTGATTAGATTAATTCATGACA
CAATATAAAATCGAATCACGCCACAAACAAAGTCTTTTTACTTTCCAGGT
TACAAGAAGTCCCCTCTGATCCATCTTCTCTTGTTTTGGATTATTACATT
CGAAATGATCCATGGACTAAACGTCTCCTTTTATTCCTTGGAACCAAAGG
CATTGCAATGGTATGTGATTATAGGACTGTCACATCAAAATCCCTATTCC
TTAAACGACACCATTTATGTCATTCCCTCAAACTTCGAGCGCTGTCAAAA
CCGTTTCACTGCAATGTAGGGCTCGAAATAACAGTCGGAAAATCATCACT
GTTTAACCCAAATTGCTTCTTGATCGACCTAAAAATCATAATTTATTAAG
CAAAAGTAACCCAAAATCAGACATTTTGTCCAGAATtacttgaaattatt
ttgatccaTGCCACTGACTTTAAAATCATTGTCTACCAAAAGTTTTCATG
AATTAAAGTGATTATATTTTAAGCAAACTAACCACAATGCTCTGAAAATT
TGATTGCAAGATCGTCAAATAAATACTTAGGAGAATTCTGTGATCATTCT
AACGTGTGCCAATTTGTATTTAAGGTTGAAATGGTACGAATGATGGGACT
ACTGCTCATTGTGGCAGTCAAACCAAAACATCTATCACATATCCGAGAAA
TACGAACTACCTACACCAAAACTGCATTCTATGGCCTACTGGTaagaaaa
aaagtatatttgAAAAGATGGTTGTATAAAATCCTGACTCAACCTTTTCA
GTATCTTATTTCAACCCAATATTCTTCTCCGAACTCCGCAATTCTGACAg
caattataattttaaaaCCTTATAATTAAACAACATGAGAACTCGGATCA
AAATTCATAAGCTTTTAAGGAGTGCTTTGCTTGTGAAAAACGCACGAAAA
TGTGTTATCAATCATGTGTTATAGGGTACCAAAGGGGCAGTAAGCATTCG
TTTCAATTTGTATGgtgaaagtttttgttttgtcaATAACCATTTCGTTG
CTGGTGAAGATTACTGTCTACAGAGAAATAATGTGagtcttttatttttg
tattttcattctCTAACATAAACAATCATCCtgttaatttatttcaaaag
atgtgttaaaaaatttttaaattcttttatctTATGGAAAAGGGTTTCTG
GTATCCCTGTgtattacatttttttgtttgattgagTAGGTAATCCAAAC
TTTTATGATACTTCAATTACTTtcttttttagcattttcaatCAGTTATG
TCGAAAACAATGTTCCCAAATTGTGAAAGTAGTGAAATTCAAAAACACAG
GTAAGAATTATTGCCAACCATGATTAGAGTAATAATATCTTTTTGAAATG
GAAGCAGGCATACTGTTCTATCGTTTAAACTATTGAACTTAGATCTTTGC
CATGGCTAGACAGTATTGGGTAAAAACTGAGCAGCATGTTCTAACCCAAA
GATTAATCGTGTGTATTCAGCAAAGacgaattatttcaaattttgaatga
gATATTATGTTTTATAGCCTTTATTATAAATGCAAGACTTCAATcactaa
aattattttccagATACAATATACTATTCGGTGATTTCAACTATCGcata
gaaaatttagaaaaatcgaACGTTCAAGAATTGGCCACAAAAAGTGattt
caaaacattaatttcAAATGATCAGGTATTCGCATTTTTCAATAACATAA
ACATAGTTTTGAATCCCAAAACtcgaaaaatgacatttcaatgAGTCGGA
AAGTTATTTTCATGTTAACCACTAAAGTGGCTGAAAGGTTGCATTTAAGA
GGGCTTGATGGGATTTAAAAACACAGACAGAATCATCATCTTTCAATAAG
TTGAGAAAGCTATTTTTCATGCTCACTATCTAGCAAAGTTGCAAGGTAGA
GGAGGGCTTGCCGATTTTCAATTGAAAACTCTCCTTgaaattttccttga
gaaatatcATGCTTGCCTTTTCATCACTTTCAAATGTATGAAGTGATTAC
TGATTGCAAGTAGGAGACTGCAATGTATTTAATTATATACTCACCTCAAA
ACTGACATCTCCTTACAGTTGACGATCAACAGGCAGAAAGGAGAATGCTT
CGAGGGTTACAACGAATTTGATATATCATTTCCACCAACTTATAAATATG
ACTTGAATTCAGATGCTTTTGATACAAGGTAAGATTCTTCGATAGGAAAT
CTCTTAATGGAACTATACTAGTTTTCAATCCGTTATTCTTAGCTTTCAGA
GTATGTTTATAACagaaggggccgtccacatagtacgtacgcactaaaat
gtcgaaaatcaaGTATAACCTTTGGTTcagacctttatttcatacactta
aaactcaatttttattaagaaactttttcttttacttaATGCGTGTACTA
TAAGTAgtgtaaaagtcgacaaaaaaacaagcaaaaaagggctatgaaaa
taatttctctgcgtacgtacattttcctttgacccctcccctccccctgt
acgcaaacATAAGCTTTTGAGAATCGAcccccccctcccccTCTTaatgc
gtacgtactatgttgACGGAACAACAAATGATAGATTCTTTTCTACAATA
TCGATCGTGGCCATTACTTTGAAACatacttttttttattcaattcaaaa
ttgctTAATTTTATTCGTTTTCATCACATTAGCGCTAAAAAGCGGACACC
TTCGTATACAGACCGAATCCTGTGGAAAGAACAGACGGACACAGGGGAAA
CGACCTTACAACAATCTTCATACAGCGCGCACATGTCATACAAATCGAGC
GATCATAGACCCATCAGCGGAGAATTTATCGTCAATATACCAGTAGGTTT
TAATAATCTTCCTCTCTATACTACATTGTGCAACACCCTGGTTTAGCCAA
ACAATTCTTTCTCGTTTACTGTATTAAACAGTTGTAAAATTCATTGTTTT
CCGTATATAAAACATTGTGTATGGAATATCCCTTGTCTTCAAAGGTTACT
TTACTTGATAGTTTTATCAAAACGTTTCCAAGTTTTTAACCTGCGTGCCA
TTTTTATGGAGTAttaaaacccggggggggggtacttaggcaaaatgggt
gccgggtatgtgcgagccataagagTACCTTtgctcattcctcaaaagtc
tctcaaaggggtacaaattcaaaagttaatctctgaaagggtcccgaaat
cacgaaaatcaaaaatttctctctcaaagggtcacgatttccaaaaattt
tgaccaaaatttggtgaaaatcaaaccaaaatttggaaaaaatggaccaa
aatttaggaaaaagtctctcaaagggtcccaaaatcaccaaaattttgtc
tctcatagtcgattttcgattttcggctcggacatacccgtcacctcgca
aacctagtaccccccacccccTGGGATTAAGaaacttttcacaaaaatga
caaaatatcaaTGTTAAAAACTTATTTTCTCTTAGGTTGTACTGACGTCA
ACTCCTGTCATCGAATTTCGATTTGACGATTCCTTCATCCCTTGGACGTC
AGAAGAGGTATGAATGATATTCTCACAACGCTTACCTCAGTAAAGTACGC
TTGTCATAGTTATTTTGTCAGCGCACCTCACGTCCTCGTGGATTAGCTTT
GGTATaagcatggaggtaataaaaatatagatggagagtcaatgcctttt
gttctattctgattcatcatcggaagcaaacagctgtttggttgctttgg
gaataagatgattaattttgggtatactcgtgggaatatttaagatgaat
gaaaagacattatatttttaacaagtatattgaaatataatagccttgtc
atgaaaaattgaagaaaaacttcacataataagcacaatactgcaaactt
ctaggggaacctgcccataaagccatcgatagatttaaaaaagaattacg
tgttacgattaggaaccttgtattgatcattttcagagtatgaaaaccgc
tgcctacttagacgtgaagattttaagataagaaactttcaatgataatg
tgatgcaactGTCAATCTTAACAAAATGTCAGCCCAAAAATGTGTCCTTA
TGAAATACTCTTTTAGTCttacatcagttgaaactatttcgaatcgcatt
ttaacaaaGATTTTCGGTAAAATTaagtctctttctgttcttataaagtt
ataaattgatgttttttgcttccaatgatggtacatcaaagaaaagccgc
tttgaatagatttataaaagatttcaacgaccacttggatcattaccgag
acgttttctctccatctatatctttattacctccatggtatAAGCGGAGT
GCCTTCAGCTTATCCAATCTTAACACAGATCTATAATTATTTCTACTTCA
TTACAGGATGGAGTTTGCATCTTTCACTGCAAAGGGTATCAGACGTCAAG
TTGGGACTGGATCGGTTTGTACTCTGTAAGTATCATAACATTTCTAAATT
GGCTTCTTTTCTACAACAAGACAATCCTTTAAaggaagaatatttttttt
gggtGGATGGATggccaaaaattattttcagagggaatttctttgcggtt
gcaggatatttttggacTGTTTTAAGGTCTGATATGGCGCAAATTTTGAA
TAGCCATGAAATTAACTAAACTTGGTGGGAACTCAATTTGCTGGATTTTA
GGTAAATCCGCCTAATCtgccaaaaaaattaagtctatcagtaaaatatt
aaaaaagttgGTCTGTCAGGATTAAGGCAGACTAATCACCACAATAGTGT
CACATATTATGTGATCTGAAGAAAACCAGCATTTCTTACAGATTTTAATT
CTTAAACCTCAGCTTGATTTCAAATCACCGAAAGATTATTACACGTACGA
ATGGTCAGTGAGTGGTGCCGACGAAACAGGTCAAGATGGATGCATGGTTT
TGTTCGATGATGTTCCCGAAGAACATGGATACTATATGTTTGGATACTGG
AGTCGTGCATTGGAATGTGTGCTCGGATTCTCTGAACCTTTCTTGGTAAG
AATTTTATAATCTATTTCAAAACAAGTGTGGTAAATCAATGCCATTATAG
TGCTCGATTAGTTTAAGAACCAGAGCCATTCTATAGTCTATTTCACGATA
CtattatttcaatatttaacttgtttttttttttactcgttACATCAGTT
TTGAATACAGGTTGCCTGACGATTGTCACCAAAGTGgtatgaaactgcca
gtagcagaatatAAAGTCTCTTCTTCCTGGCAGACATCGCTCTACATATG
TATCGAGCACTGtaaaaaactaaagaaatacTTATTGTAAAGAGTAGTCT
TAGTAACACAATATTTCTCTTTGACCAGGTGGCTCCTGAACCAGAACCTG
AAGAACCACAAGAAGTGACGGTCGAATCGCCCCCTGAAGCTGGTGCTAAT
CAAGTGTGA Coding sequence (CDS) from alignment at sc0000021_pilon:1560823..1566631+ >XLOC_037136 ID=XLOC_037136|Name=XLOC_037136|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2622bp|location=Sequence derived from alignment at sc0000021_pilon:1560823..1566631+ (Clytia hemisphaerica_ch_hm2_pilon)
AGAATTGTAACATCGTCATGGAATATTGCTGGTCTATCTCCAAAAGATGA
GAATTTAGATGAGTGGTTACATTTGTTAGAAGATCACCATGATAAACTTT
CTGATGTCTTCGTTGTTGGAGAATTGTAACATCGTCATGGAATATTGCTG
GTCTATCTCCAAAAGATGAGAATTTAGATGAGTGGTTACATTTGTTAGAA
GATCACCATGATAAACTTTCTGATGTCTTCGTTGTTGGGTTACAAGAAGT
CCCCTCTGATCCATCTTCTCTTGTTTTGGATTATTACATTCGAAATGATC
CATGGACTAAACGTCTCCTTTTATTCCTTGGAACCAAAGGCATTGCAATG
GTTACAAGAAGTCCCCTCTGATCCATCTTCTCTTGTTTTGGATTATTACA
TTCGAAATGATCCATGGACTAAACGTCTCCTTTTATTCCTTGGAACCAAA
GGCATTGCAATGGTTGAAATGGTACGAATGATGGGACTACTGCTCATTGT
GGCAGTCAAACCAAAACATCTATCACATATCCGAGAAATACGAACTACCT
ACACCAAAACTGCATTCTATGGCCTACTGGTTGAAATGGTACGAATGATG
GGACTACTGCTCATTGTGGCAGTCAAACCAAAACATCTATCACATATCCG
AGAAATACGAACTACCTACACCAAAACTGCATTCTATGGCCTACTGGGTA
CCAAAGGGGCAGTAAGCATTCGTTTCAATTTGTATGgtgaaagtttttgt
tttgtcaATAACCATTTCGTTGCTGGTGAAGATTACTGTCTACAGAGAAA
TAATGGTACCAAAGGGGCAGTAAGCATTCGTTTCAATTTGTATGgtgaaa
gtttttgttttgtcaATAACCATTTCGTTGCTGGTGAAGATTACTGTCTA
CAGAGAAATAATcattttcaatCAGTTATGTCGAAAACAATGTTCCCAAA
TTGTGAAAGTAGTGAAATTCAAAAACACAGcattttcaatCAGTTATGTC
GAAAACAATGTTCCCAAATTGTGAAAGTAGTGAAATTCAAAAACACAGAT
ACAATATACTATTCGGTGATTTCAACTATCGcatagaaaatttagaaaaa
tcgaACGTTCAAGAATTGGCCACAAAAAGTGatttcaaaacattaatttc
AAATGATCAGATACAATATACTATTCGGTGATTTCAACTATCGcatagaa
aatttagaaaaatcgaACGTTCAAGAATTGGCCACAAAAAGTGatttcaa
aacattaatttcAAATGATCAGTTGACGATCAACAGGCAGAAAGGAGAAT
GCTTCGAGGGTTACAACGAATTTGATATATCATTTCCACCAACTTATAAA
TATGACTTGAATTCAGATGCTTTTGATACAAGTTGACGATCAACAGGCAG
AAAGGAGAATGCTTCGAGGGTTACAACGAATTTGATATATCATTTCCACC
AACTTATAAATATGACTTGAATTCAGATGCTTTTGATACAAGCGCTAAAA
AGCGGACACCTTCGTATACAGACCGAATCCTGTGGAAAGAACAGACGGAC
ACAGGGGAAACGACCTTACAACAATCTTCATACAGCGCGCACATGTCATA
CAAATCGAGCGATCATAGACCCATCAGCGGAGAATTTATCGTCAATATAC
CACGCTAAAAAGCGGACACCTTCGTATACAGACCGAATCCTGTGGAAAGA
ACAGACGGACACAGGGGAAACGACCTTACAACAATCTTCATACAGCGCGC
ACATGTCATACAAATCGAGCGATCATAGACCCATCAGCGGAGAATTTATC
GTCAATATACCAGTTGTACTGACGTCAACTCCTGTCATCGAATTTCGATT
TGACGATTCCTTCATCCCTTGGACGTCAGAAGAGGTTGTACTGACGTCAA
CTCCTGTCATCGAATTTCGATTTGACGATTCCTTCATCCCTTGGACGTCA
GAAGAGGATGGAGTTTGCATCTTTCACTGCAAAGGGTATCAGACGTCAAG
TTGGGACTGGATCGGTTTGTACTCTGATGGAGTTTGCATCTTTCACTGCA
AAGGGTATCAGACGTCAAGTTGGGACTGGATCGGTTTGTACTCTCTTGAT
TTCAAATCACCGAAAGATTATTACACGTACGAATGGTCAGTGAGTGGTGC
CGACGAAACAGGTCAAGATGGATGCATGGTTTTGTTCGATGATGTTCCCG
AAGAACATGGATACTATATGTTTGGATACTGGAGTCGTGCATTGGAATGT
GTGCTCGGATTCTCTGAACCTTTCTTGCTTGATTTCAAATCACCGAAAGA
TTATTACACGTACGAATGGTCAGTGAGTGGTGCCGACGAAACAGGTCAAG
ATGGATGCATGGTTTTGTTCGATGATGTTCCCGAAGAACATGGATACTAT
ATGTTTGGATACTGGAGTCGTGCATTGGAATGTGTGCTCGGATTCTCTGA
ACCTTTCTTGGTGGCTCCTGAACCAGAACCTGAAGAACCACAAGAAGTGA
CGGTCGAATCGCCCCCTGAAGCTGGTGCTAATCAAGTGTGAGTGGCTCCT
GAACCAGAACCTGAAGAACCACAAGAAGTGACGGTCGAATCGCCCCCTGA
AGCTGGTGCTAATCAAGTGTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000021_pilon | genome | sc0000021_pilon:1560823..1566631 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1240-1320:5729 |
| Aaloc | 1057-1239:5213 |
| Aaloc | 988-1056:4757 |
| Aaloc | 916-987:3836 |
| Aaloc | 757-915:3034 |
| Aaloc | 646-753:2419 |
| Aaloc | 535-645:1915 |
| Aaloc | 466-531:1583 |
| Aaloc | 358-465:1275 |
| Aaloc | 241-357:925 |
| Aaloc | 130-240:400 |
| Aaloc | 10-126:1 |
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