|
|
Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000086_pilon:773384..779492+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_037088 ID=XLOC_037088|Name=XLOC_037088|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6109bp|location=Sequence derived from alignment at sc0000086_pilon:773384..779492+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCATCTatggatgaaaatgaagattggaTTTTTATACCTCTGGATGAA
CATGTGCTGGTATGTGCCAAACTCCTACCCAGTCCCCAGTTCACAGTTCT
TTCAGCATTTACGATTTTACCGCCTTGTAGTCCAGAGTGGGTAGGAGTCA
GTaagaaaatttacatttttaacTGACAGAGGGTCCAATAggagtgagac
aggggtgagtcGTCACCAATCCCTCCTATTTTTTCATCCTTTTTGCATAT
CTTGAAAGTTCGATTATGCATATTAAATGTGCGATTCAACTATGTTGCTT
TTCAAAATGACACCGTCAATTAACTTAAGTTCCATCTTTGCAAAACTAAG
AATCGAAATGGTGCCTGCTACCTGGGATTCCAGTAAACTTAGTTACGCAA
GTCATGTCATCAGTCTATTAAAAAGTCTTTATTGGATGAAAGAGACAGGG
TACAAACATTTTACCTTAATGATAAATCACAGAGAAATTCTTCAATTACA
GAGGACACATCGTAATAAAGGGCCGCTTCATAGTATGTGTCTTGGCagaa
tcttttttgaaaagggCTTACTAGAAAAGGGAAATATAATCATCCTTACT
GTTTCATTGAAGAAGCACTGATATAACAAATAACCGCGTTCATCAGAGGG
ATGAATTCTTATATTACAGGATTTCTCTTGTAAATGGAGTTGATGAATCG
GAGCTTTCACCGATACTCAATAAAATTTTGGATCCattgatttatgaaaa
aagttcAATCCCAATCAAGGACGGTAAGAATCTCATCGTAATCAATAAAG
TACCTTATCTATGTTTTATGTAGATGTATTTCTACAATCCAAATTTCCCA
AGAGATTTCAACCTGTGCTTTCAAATCAGGCTTcagtaacctgagatcag
attgtgattgttttctgcacaccacgctgaagctctaaagagatgtgtga
aaacataacaatctgacgaatatgctatctcaaaatcgtaaggaccgcat
TCATCTAAAAgaactgggaatgacaacaaagttgcgtgattgtgtttatg
aatagggcgccgtatcagtaaaatttagtttttgacttttagatCGATAC
ATAACACCCAGATATGAGATTCCCATATTCCAAATggacaaaaaacgtca
aaataaggTCCATGTAGAGCGTTAAAAGAATTTATCAGTTACAATATATT
AAAAtcgtaaaaattttatttagatCAAAAGCCGATCCAAGCGACAGTGA
GCATTTTCACTAACGATATGATACCACGTGAAAATCTCGATATGGTATGT
GTCTGcttattttttgtttagttttctaCGTTACTTGTTATATATGACTG
TTATGGCCTTCATCCAATTTTCTTGGTGATTGTCTTATGATTAAGTTTCA
CAGCTTTTGCAGCAATTTGACCGACTGAGGTAAAGTAATCGAATGATTCT
GTTAACGGACAACCAAAACAGATTCTCCAGCTTAGACAGTAGAGCAGACA
AGATCTACTCAtgcattttctttcaatttttgatcTGATCCTGATTTCTT
ACGTGCTAGCGTTAAGACTTACGTATGTTCTATAGTCGTTGGATATACTt
agaaaatcttaaatattttctcaatttttcagcattttacaTACGATTTC
TTCTTTACAATCGAATGGAATGATTACCGTTTGAAATATAACCTATCAAG
CTCCAATGATACTGTTTTACCTTTCGATTACACCATTTTGAAAGACATCT
GGGCACCGAATCTCTACTTCGCACAAACGAAAGACGGACTTGTACCAGAC
TTTCCACAGCCGAATGTCATGGTCACGATCACTAAGGACGGTGATGTGCG
GTTGAATTATAAGTAAGTAAGCGGTTAGACTTTCATTAAAGTTTATAATg
aatatatataaaaatattcttaatttttcgtttttatcagtttgagttat
ttatatatcaattatcaatacttttctttttctaaagtgacagatattac
atatcttcactatatatatatatatttctaggcaattcgatctgcctagc
cagggtgcagtatgcagtgctgacgagtcctaataaggacgaaatgcata
tgctgctctgccacccaaatcttctgaaaaagaagatagttggacagaaa
ttctttgaattccttcacatatatatatatgtatataaacacgtggaaag
tcactatgccagtcacaagtctgggacttcgggttttgttttgtttatgt
atgttttccgaaggcgactgagtgtgggcccttaaacacgtggaaagtca
ctatgccagtcacaagtctgggacttcgggttttgttttgtttatgtatc
ctttttttttttttttttttttttttttttaatttatttgatgtgtttgc
ttttgtatttgtccccattttgtatgtattttgatgaacttacggaagtg
tgtttatcaaaaaagttttttgcaattcattgtttctccactattacttt
tcttctatctttatttggattaggtttttctttcacataccactacacgt
ttttttttttttaagaaactagttttaccaagcagcctcaatgtttctta
agaaatcggccttttgagccttaaatgtttcttacatgtttctaaacttt
ttgacataatcagcctcatggaaggctggattgcaaggttcttaagaaaa
accgatttaaaaaatattattttctcattctcagcctcagcatgtttctt
agatgtttcttagtttttaggcattctgagcctcatgtttcttaaaagtg
tgtttcttaaaaaaaaaaaaacgtgtatttaaattccctttaactttttg
ctaaattaccctctgtttcggaatgattaaaaaataaaaaataccaaaaa
aatcgtaaatacacacaattaacaaaaatattcttaacttttttcgtttt
tatcagtttgagttatttatatatcaatacttttctttttctaaaatgac
agatattacatatcttcactatatatatcaatattatataaaaaatattg
aaactatGATCACTTTGATCATTGAGAAAAATAATGGAATGGGCTAGACT
TATACCGAAGAGAAGGTGAACAGAGCAGAATTAGGGCACAAAGAATGagt
ttcatttcaaaaaatattctagatTGATTACTTGGTTGGATGAAAAATGA
TGTTATGTTAAACGGCGGGTACGCTTATAAGAGTACCAAGAATAATACCT
TAGTCTCTTAAGTGATGGGCTGGGGAGTCTGGAATGAGCACttgggttgg
aaaaatttctcaaatactAAATTGCCGGGTTTGGAAATGAGGAAGTTATG
GAAATACTTTTTCACAATTAAATAAGCGAGGGATAAAGGGAGTATTTTCA
ATCCCAGAcaatcaatttatttttcaggaTAATATTGACGTTATTCTGTG
CTATGGATTTGACGTTTTATCCGTTCGATATACAAAAGTGTAATTTGAAT
CTGGAATCGtgtaagaatttattttttataaatatggtGTCAAAATCATC
TCCAAACCTCACAGGTTTTGATAAAAACGAAGAATTACATACAGGGCGCA
TGTTTGATAATATGTCTGGTATCTACAGACAAGAGGGAAAGGAAAAATTG
ATAACATAtcgcaacctcgtccccgtgtatcccaggctttattcatgtta
ctgattgacgcgttcgaaaaccagacaatgccagggtattatctagtgct
accagtaagcataaaaaagctgataatacagaTCCCTATTTATTATATTA
AAACTTGGGCCATTTACGGTGtaaagaagaatttttccaaaagcaataaa
atgttttgcaaggttttttagttacaagttttaccatttttcaaaaggGA
TGTCCGCACAACttgaagaattatttttgtcCCAAAAaggtcctcccccc
cccccagagtggaaataaaatggaatgaccGATTTAAGTTGCATAAGCTT
ACTGGCTATCTTTTGTTGACATTAGATTCATATGGTTTGCATTTCCTGAA
CATCAGCTGGGGATACTTCATATATGACAAAGAAAGAGTGCGAACACAAG
ATTTTAATAAAGTTGAAATCAAAACTGATCAGACAGTCTCAACCTATCAC
ACTATTGGTCAGTTCATACATTATCTATTTTTTGATTAATTAAATTTAGG
TTTATTATCCTCAAATTCTAAATCTCACTTTGCAAAATGTTTGGCTCATA
GATACCTCAAAATATCTctcaaatttcattaaaaatgcCAACTTtgagtt
tttgactttcttctGTTTCTACCATCTATTTGCTTACGTTCATAGATTAG
TAAGATATGAAAAGCTGTtaataatacacgttttttttattataaagaac
acgtttataaggaactcgatgctgaaaatggtccaaaaaataaggaattg
ttaaggagctgctcaggctgagaataagaaaacaagttttaaggaatcca
atttttgcgaatccaaacttagcagctatgtaaataaggaactcgataag
gaactttgaagctgaaattatctgtaaaaataaggagctccgggctcaga
gcaaagttaaggttccttataaaaaaatgtgtatccaTCAATATCGATTC
ATCATGATTTTTCAGGTCAATGGAAAGGGTTAATAATCGAATTCACATTT
TATCGAAACGCACCTTTGTATTTGATACGAGATTTTCTACCATGTACTCT
AATAGTCATGCTATCTTGGGTCAATTTCTGGATCAACTTTCGAAGTACGC
CTGCGCGGACCGCCCTCGGTATAACAACTGTATTGACAATCGTTACCATG
ACGAACAACGTCCGCAAAAATACGCCAAGTTCATCAGGGTTGTTTCGAAG
TATAGACTTTTACATGTTGGTATGCAATATGTTTGTTTTTGCCGCTCTTG
TTGAAGGGGCGTTAGTGGGAATGACCGCCCCTAATGAGAAATATGTGAAA
AGTACTTTTAAGAATCAAGTCAAGAAGGTTCTGCGAAATACACGAAATAA
AAGCAAGAAGCTGGATATGGTAAGTAGAATGGAATCTCTATAAATCGAAT
ACCCACAGGGAActgaaatttgttcgagttaaagaaacttGCTATGTCAA
ATGTTTCTACTTTGCAGGTATCAGAAGCTTGCGAGCTTTAAGGGACATTT
GAAATATAGAGGGTCGATTTATAAAAATCCTACTGTACTTGTGTGTGAAT
TGAAGCACCGGGATGAAATCTTTCCAGAAATGTAGCCCTGTAAATTTGAT
CCATCTACTTCCATTTGTTCAtctaatttatttaaaatttgccCTAAACC
CGATATTGGTGACGAAAGGTcttttagaatgtttttaaaagaaagagCTT
TCTAGATATTGTTGTTCAAATCCTCTATTAAGAGATAGCCCGCGTTTTCT
TAATCGTGGAGAGTGTGTCGTAACATTATTGCATTATCTAGCACCCAGAT
gcaaaaattttcatccgacacgctaaagctctggaggtcggaaaattttt
caacatctggaatgtttacattgcagaattttgcaagaccacgtcaagaa
ttttgcagcgggaggtctggtaacccagctcTCGTTTTTGGGGATCGGct
ggtccaaccgaaatatttataCCTTCCCGCACAGGAAGGCTGTTGAACCt
gactggggatgcggcacatcaaaggctgaCTATCatttctctccgatggg
aaattgacccgatcctttagagctttaacgTGGGCGGCTGCCAAtccacc
atcggaatatcagataaatgaTTGCACTGCCCCTTGTCTCGTTAGGCGGA
TGTAGTGAAGAGGCGATTaaaagaagagagtgaaaaggagaaagaagaag
aagaagatgaagagaaaaTCACATCCACAATCATCCAACGAGTTCGACCA
ATCACAACAGAGACATTCAAACTCGGTCCATTCCACTTTTACAAAGGAGA
AATTCATATCATTGATCGCATTTGtcgatttttgtttccttttctttttc
ttatattcaactttaccttcttcatttttcatatgTTGAAAGAGGAGAGT
GTTTTGTAA Coding sequence (CDS) from alignment at sc0000086_pilon:773384..779492+ >XLOC_037088 ID=XLOC_037088|Name=XLOC_037088|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2694bp|location=Sequence derived from alignment at sc0000086_pilon:773384..779492+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCATCTatggatgaaaatgaagattggaTTTTTATACCTCTGGATGAA
CATGTGCTGATGCATCTatggatgaaaatgaagattggaTTTTTATACCT
CTGGATGAACATGTGCTGGATTTCTCTTGTAAATGGAGTTGATGAATCGG
AGCTTTCACCGATACTCAATAAAATTTTGGATCCattgatttatgaaaaa
agttcAATCCCAATCAAGGACGGATTTCTCTTGTAAATGGAGTTGATGAA
TCGGAGCTTTCACCGATACTCAATAAAATTTTGGATCCattgatttatga
aaaaagttcAATCCCAATCAAGGACGatCAAAAGCCGATCCAAGCGACAG
TGAGCATTTTCACTAACGATATGATACCACGTGAAAATCTCGATATGatC
AAAAGCCGATCCAAGCGACAGTGAGCATTTTCACTAACGATATGATACCA
CGTGAAAATCTCGATATGcattttacaTACGATTTCTTCTTTACAATCGA
ATGGAATGATTACCGTTTGAAATATAACCTATCAAGCTCCAATGATACTG
TTTTACCTTTCGATTACACCATTTTGAAAGACATCTGGGCACCGAATCTC
TACTTCGCACAAACGAAAGACGGACTTGTACCAGACTTTCCACAGCCGAA
TGTCATGGTCACGATCACTAAGGACGGTGATGTGCGGTTGAATTATAAca
ttttacaTACGATTTCTTCTTTACAATCGAATGGAATGATTACCGTTTGA
AATATAACCTATCAAGCTCCAATGATACTGTTTTACCTTTCGATTACACC
ATTTTGAAAGACATCTGGGCACCGAATCTCTACTTCGCACAAACGAAAGA
CGGACTTGTACCAGACTTTCCACAGCCGAATGTCATGGTCACGATCACTA
AGGACGGTGATGTGCGGTTGAATTATAAgaTAATATTGACGTTATTCTGT
GCTATGGATTTGACGTTTTATCCGTTCGATATACAAAAGTGTAATTTGAA
TCTGGAATCGtgaTAATATTGACGTTATTCTGTGCTATGGATTTGACGTT
TTATCCGTTCGATATACAAAAGTGTAATTTGAATCTGGAATCGtATTCAT
ATGGTTTGCATTTCCTGAACATCAGCTGGGGATACTTCATATATGACAAA
GAAAGAGTGCGAACACAAGATTTTAATAAAGTTGAAATCAAAACTGATCA
GACAGTCTCAACCTATCACACTATTGATTCATATGGTTTGCATTTCCTGA
ACATCAGCTGGGGATACTTCATATATGACAAAGAAAGAGTGCGAACACAA
GATTTTAATAAAGTTGAAATCAAAACTGATCAGACAGTCTCAACCTATCA
CACTATTGGTCAATGGAAAGGGTTAATAATCGAATTCACATTTTATCGAA
ACGCACCTTTGTATTTGATACGAGATTTTCTACCATGTACTCTAATAGTC
ATGCTATCTTGGGTCAATTTCTGGATCAACTTTCGAAGTACGCCTGCGCG
GACCGCCCTCGGTATAACAACTGTATTGACAATCGTTACCATGACGAACA
ACGTCCGCAAAAATACGCCAAGTTCATCAGGGTTGTTTCGAAGTATAGAC
TTTTACATGTTGGTATGCAATATGTTTGTTTTTGCCGCTCTTGTTGAAGG
GGCGTTAGTGGGAATGACCGCCCCTAATGAGAAATATGTGAAAAGTACTT
TTAAGAATCAAGTCAAGAAGGTTCTGCGAAATACACGAAATAAAAGCAAG
AAGCTGGATATGGTCAATGGAAAGGGTTAATAATCGAATTCACATTTTAT
CGAAACGCACCTTTGTATTTGATACGAGATTTTCTACCATGTACTCTAAT
AGTCATGCTATCTTGGGTCAATTTCTGGATCAACTTTCGAAGTACGCCTG
CGCGGACCGCCCTCGGTATAACAACTGTATTGACAATCGTTACCATGACG
AACAACGTCCGCAAAAATACGCCAAGTTCATCAGGGTTGTTTCGAAGTAT
AGACTTTTACATGTTGGTATGCAATATGTTTGTTTTTGCCGCTCTTGTTG
AAGGGGCGTTAGTGGGAATGACCGCCCCTAATGAGAAATATGTGAAAAGT
ACTTTTAAGAATCAAGTCAAGAAGGTTCTGCGAAATACACGAAATAAAAG
CAAGAAGCTGGATATGGCGGATGTAGTGAAGAGGCGATTaaaagaagaga
gtgaaaaggagaaagaagaagaagaagatgaagagaaaaTCACATCCACA
ATCATCCAACGAGTTCGACCAATCACAACAGAGACATTCAAACTCGGTCC
ATTCCACTTTTACAAAGGAGAAATTCATATCATTGATCGCATTTGtcgat
ttttgtttccttttctttttcttatattcaactttaccttcttcattttt
catatgTTGAAAGAGGAGAGTGTTTTGTAAGCGGATGTAGTGAAGAGGCG
ATTaaaagaagagagtgaaaaggagaaagaagaagaagaagatgaagaga
aaaTCACATCCACAATCATCCAACGAGTTCGACCAATCACAACAGAGACA
TTCAAACTCGGTCCATTCCACTTTTACAAAGGAGAAATTCATATCATTGA
TCGCATTTGtcgatttttgtttccttttctttttcttatattcaacttta
ccttcttcatttttcatatgTTGAAAGAGGAGAGTGTTTTGTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086_pilon | genome | sc0000086_pilon:773384..779492 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1084-1347:5846 |
| Aaloc | 682-1083:4668 |
| Aaloc | 550-678:4028 |
| Aaloc | 466-546:3429 |
| Aaloc | 235-462:1633 |
| Aaloc | 166-234:1226 |
| Aaloc | 61-162:671 |
| Aaloc | 1-57:1 |
|
