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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000086_pilon:804177..810094+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_037087 ID=XLOC_037087|Name=XLOC_037087|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5918bp|location=Sequence derived from alignment at sc0000086_pilon:804177..810094+ (Clytia hemisphaerica_ch_hm2_pilon)
CAGATAAAAGCATGCTTTATTATGGGTTCTGGCTCAACTAAAAAATCAAA
GGAAGATAGAGAACCACGTATGGATAGTATCCAAAACAACAATAATTCTG
ATGAAGTATCTCTCAACAAAGACGGTGAAACAGTAGTAGATTTTCTTCAG
AATTTCGAAAACCTGTTACAAACTTGTAGTGGTTTATTTGATGATGGTAT
CGATGCTTTTAAATGGGCAACGGAGAACTCGTGTAACCTTTTTGATCAAC
TGACAAGGTCATGTCTTCGGAATACTGCTGGTGGAAAGAGACATTTGGAG
AGAGAGGAGCGAGAAGAAATCGCATCCAAGGTAGTGATATCTGATATAAC
AAAACATTTTACCGACTGTCTACAATATATAAGACAAAATTATCCAGATG
CACTTGAGAAGGATGAAAAGTCTCTAAAAAATGAGTTTCAGTCTTTAGAT
GAGGAAGAGGactcaaaagaaaaacttgaattgacaattttgtttcaaaa
aataatttgtgcaattgtcggattttttgtcaataatgtTGATGTGAGTA
AAAACTTTGGTGGTAAGTGTGTTGAAAATGGAACTGTTGGCATACTTCTT
CAATATGTTGAATCTTATCAAAATATATGCTTTGAAGAGGACAAAACTGT
AAGTCAATATGCTTTATTATTAACGCTTTAAATTGAAGGCCCCAAAATGA
AATTTGCTCACCTttgactgaaaaatttgaagagGTCTTGGTATGTACGT
TTGAAAGTTCTTTTcacattttatatttttaagccCTTATAGATATTCTA
TTGTTTAGAATTTTCTGTTGTAATAAAATTATTAGCAAAAATGAATATAA
CTGAAAAAGTCTTTCATGGAAAGTGATGGTCCACCCTACTCCGCTTACTG
ATTCTTACGTAAAAATGAATGTCTAATAATTCAGatgatattttatgttt
gtttaaACAGCATATTATTTTGTGGATGTGATGAATTTATTCATCAATAG
AGTGCTTAACCAACCGAAACTGAAGCGTGATATGATAGTTGAAGCAGTGC
AAATTTTTGTATTAATACTGACAGTTTCATGTCAATTAAAGAtttctaaa
atgttttttcacaGGATGTCAAATTTGAGAATCTtcgagaaaacaaaaga
atccaaACAGTCAACAGAGTGTTGAGTTTCCATCATaacatttcaaaaga
tttttgtgaaCACATGGTGAAGAATAAAGCGATCGAAACCATGGCACCTT
ATGTCAATAGCACCAATCCATTGCTGGCGATGAAATCATTGTTGGTGTTG
TCACATTTGATCTCAGAAGAGCAGAATAATATGATCACATCTACAGATGG
TAAGCTCTACATTCAAATTAAAATCGGATTTTCCAGAACAGTTCTGCGTT
CACTGAAAAAGAAATGCTTAAGAAATCTTTGGATATTCAATATCATCAAG
GGTAGGAGTTGAAGTATTCTCTTAGAAAAAATTCGATCTCTAAACGACCC
TAAAGTGCATCATTGTAGGATAATTTGACACCGACGAGAATGTAAAGATG
AGTAAAATAACACTGTCCTATAGGTAACTATCGGTAGATCAGAGACTATG
GACAGTTTTATCTTTAAAGGTTTCTATTAAAAGCTAAGCAAAAGGAGCTT
TGTAATTTTGTATATAATAGaatatcattattcttttttcaGGTCCCATA
TCAATTCTTCTACAACACTTGGAAGGAGCTGCCAAATCAAATTCCAATCG
TTACAATGGATTCGAAACTTCCGAACTTTTGATGGGTTTGTCCAAAATTC
TGCAGAATgaccaaaataagaaaaaggtaaacacaaagTATTTTCATATC
TCCAAATCGAAAGACAATTGACTAAATTACACCTGGCTAAATGTATGTAG
GGTATTAAGGTATTTCATCGTCGTTGTGACCCTTAAGGGTAAATTTTAAA
CTTCCAAGAGTGCACTGTAAGTGTTGATATAAGATGGGATGAAAAAGAAC
AATTGGAAAATGGGATAACAAAAATTATGAATACACCGTCAGGGTAGATT
TTTGtacaaattctttcaaattttaactaAACTCTAGTTTTCTTTTTTGC
GCTGTGAGTGTTCAATTTTAAGAAGACCCCAACTTTTATCTGTACAAACA
GCCGTGTCTTAAAATCGAATCCTCCTTCCTcccccccTAAACTTTATATA
TATTGACTTTGAAAAAGATGGCCAGGGAGCAGAAAACTATTCTAATTAAA
ACACTGAAAGCCataatttttatagaaatctatttttctttctattCGAA
GGTTGGAGATCAAGGTGGTATTGAAATACTTTCCCAGATCATTTACAAAA
TCACATCATCAAACTCTGAAGACGAAAACAATATGAAAATCCTAGAGTTT
GTTTTTAACTGTATCTATTTATTATCCTTCCACGAAGACAATAAAGAGAA
TATTATGAACAATGGTGTTATTGTACACGCTCTACATAATTGTTCATCAA
TGAACAATAAAAGTATTCTTATTGACGCACATGGCACCCTTTGGGAATTG
AAAGATAAGAAAACACGTGTTCCCATGAAACACCATTATATGAGAAGCAA
ATCaatgaaatcgaagaaggcAACGCTCCCTAAACTAAGAAAGAAATCGA
GAAGTCACAGCGAATTAGAATGGAATGAAAATCAGCAACTACCTAATGCG
AGGGAACTCTCAGGTAAATTCACCTACCAACCCTTActcaatcaagattt
ttgagACTGAGTTTACCAGGGTTAGTTGGTAAACACAAATTATTCAGCTT
TTCGCGCTAGGGTTAATAGGCTTATATAAATGACATTTTCTGCTATTGTG
TGACTCGCTGATCTCGGGTGATTTGGTTGTTTGCAACTGTTTGCAAGACT
GATAGAAGAGAATATACACAGAACGTACTCGTTCGattcatttttataaa
ttatgGCATGGCTTTTTATATAAGCACATTAGAGCATTATTTACGGACAC
AATTTCTTTgtaaatttcacgaaaacaggcgcgaaatcatgaaaaaagaa
caattaatGGCTATGtttaaaaggttttaaattaaaattaatgcTGTACT
TTCTTCCAGTAAATGAACCAATATCAGGAGGTTCATCCgaaactgaggaa
aaagaagaacaagatgaagaagatgaacaacaacctgaagaagaagaaga
tgtagtgataaaggaacagaaATTACAACATATTATGATCTCTTATCAAT
GGTCACATCAACCCATCATGCTAAAAGTATGTTCTTAGCAATACAAAAAG
TGGGAAGTTTACAAGAAAAAAGGAATTCGTTATTGATTTTTCTGTAGTTT
CTAGGCTTTTGTTCATGCGTTCAGGTTTTTACAAACAAATTTTAAAGGTT
ATCAAGACTGAAAAGTTACTTAAATCTTTATTGCTTAGACGATGACTTAA
TTTTTGTATACAAATATTTCCTTTCCCTCGTTAGGTTCGAGACAAACTGC
AAGAAGAAGGGTTCACAGTGTGGATTGATTTGGATGAAATGAAAGGTTCC
ACACTGGAAGCTATGGCAAATGCAGTTGAAGATGCTTACCTCATACTCGT
CACAGTGTCAAGCAATTACAAAGCAAGTGCTAATACTAGATCTGGTAAGA
ATCGAACATTCTCAAGTAATGCTAACAGACTCCTAATAAACAGGGGGTTC
AAAATTTAATAGAGGAGTTTAACCCCATCCTAAAAACTCTAACTCGAATC
TACTTTAActggattaactttcgcgagatttACCCaggaatttttgtcat
tttcgcgaaaatgaaaCTCACAAATTGCGTGAAATCATTCATGTCTACCC
GAAATTTTCTAAATCAGATTTTCAGCGTAAAATACACTGTAAATATGGTA
tttttcacgtttaaggggcaattttcaacaagtttttgactgttttgcga
tattttttttgaaaaagctgattttccattttcgaaaatagatctagaaa
aatttcgcatattttttcGCAAATAtcaatcccattaaagtatagaGTAG
TTTCCAGTAGAGCGTTTCAAACATACTTGATTGTACATTGCATATGCATT
CAACGAGCAAATGTTACCAATTGTATGTAAGAGCGTAAGAGGTACTTGTT
GTTGTCAATGAAGCATTTCCTTAACAATTTTCATTGCATTCCATTAGAAG
CTGAATATGCATTTCAACTGAAGAAACCGATCATCCCTTTAATGATGGAG
AGAGATTACAAAGCCGATGGATGGCTTGGTTTCATCGTTGGTTCCAAATT
ATGGATCGATTTTATTGATGAGAACAATATCGAAAGCTCTTCATTGAATA
ATTTGGTGGCAGAAATCCATCGACAAGGTTTTAAGCCTGATAACGAAAAT
GAGGGTAGGTCAACATTTCcattaatgaaaatttaattaTGTTTTATTAC
TTATTATAGAGAATTACGTTAGTTAGGCTCAAAGTAAGAACCATTGTCCA
TATTGGAttggttttcaaatttttcttttatgtaTTTTTAGTAGGATTTC
TGACTTATCTCTTAATGGTTTAAAATTTGTAATGTTGACCTCTTGTAAAA
ATTCAAACACCTTTGTCCAcactttcacttttttgcattcAATCGATTTA
GTCTTGAAGCCTCAGCCTAGTCCTCAACCATCCACAAAATTCAACGATCG
AGAGGAGCTCCGGAGAAAAATTTCGCAATGGACACCAGATGACGTGCGTA
AATGGATCACATCCAACGAACTGATAGTAAATGGTGACGTCATCGTTAAA
CATTTAGATGGATACGTTTTACTCCACTTATTTGACCTTCGAAAAGAGGT
GTGTATGTATGGAGAAGATTGTTCGTTATTATACTCTTCCTCTATTGACA
AGAAAGCGTATATAGCGAGTAGAAAGAGATTAATCCAATAGAATTAGGTT
TTACCTCGAAAATGATATGTGGCTGAGTTGAATGTGCTCACCCAGCAAAA
ATCATTGACCTTAAAACCTATAACTCCCTTAGTTTATATGTCTTTGTGTC
CGATGGAACTTTTTTACTCGTGTGTTTGAAGCTTTTCTTCGAAATTCTAT
CGAGGGTCTTATGTATAAACCCAACAAAATAAAGCAGGCTATGccatttt
ttcccattttctttaaaatgcgGAGAAGATTGTTGTGAAATATTGCTGGT
GAGATAAAGGCCATTTTCTCACTTGATTATTACCGTTTGAGATTTCAAAG
TTATGAACAAAGGTTCGAGAAGAACAAAAACACATTGTGACAAATCTGAC
TTTATAATcctgattaaaaaaaaagtagtaGAGTTTCCTCTCTAAATTTT
ATAAATCCCATCTTTCCTATACTTCATTTGATGTATCGTTTGTTCAGGAA
GAAAGGTTTTAGACAATCAGTGGGAGGGGACATAAAACCAACCCACTCAA
CAAGCTTTATTTAGTGTAGTGCTCTTTtaataagatttaaaaaagaatgt
aTGCGAACTATATTACTTCGGATGCAAGCTCCTAACTTTCTCTGTATCAC
CGGGATACGCCCTGTATCACCGGGATCCCCCTAGCCACTGAAAAGTCTGT
CTAAGAATCAAGAACTGTTTCAATCTCAAATACTCTGAGATTTCATCTCC
ATTAAAGACAACTATACTTAACAATTCTTGCACTTATCCCAATAGGCGAA
ACTTTGGTTCGAGTTTTGAGCAATCTTCAATCTTCACGTCAATGGACAGA
GAATGTTTGTGCCCTGCTCTTTCAACTGCAAATTGAACATtgatatgttt
tttattttaggctCCAGATACTTTCTACAAGTTCTTAAAGAAAGACCTCG
CATTGGATACGCTGAAAAATCTATTCCAATTTGCGGACTGTCTGGCCAAA
CTTTTGGACGATACATGA Coding sequence (CDS) from alignment at sc0000086_pilon:804177..810094+ >XLOC_037087 ID=XLOC_037087|Name=XLOC_037087|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4536bp|location=Sequence derived from alignment at sc0000086_pilon:804177..810094+ (Clytia hemisphaerica_ch_hm2_pilon)
CAGATAAAAGCATGCTTTATTATGGGTTCTGGCTCAACTAAAAAATCAAA
GGAAGATAGAGAACCACGTATGGATAGTATCCAAAACAACAATAATTCTG
ATGAAGTATCTCTCAACAAAGACGGTGAAACAGTAGTAGATTTTCTTCAG
AATTTCGAAAACCTGTTACAAACTTGTAGTGGTTTATTTGATGATGGTAT
CGATGCTTTTAAATGGGCAACGGAGAACTCGTGTAACCTTTTTGATCAAC
TGACAAGGTCATGTCTTCGGAATACTGCTGGTGGAAAGAGACATTTGGAG
AGAGAGGAGCGAGAAGAAATCGCATCCAAGGTAGTGATATCTGATATAAC
AAAACATTTTACCGACTGTCTACAATATATAAGACAAAATTATCCAGATG
CACTTGAGAAGGATGAAAAGTCTCTAAAAAATGAGTTTCAGTCTTTAGAT
GAGGAAGAGGactcaaaagaaaaacttgaattgacaattttgtttcaaaa
aataatttgtgcaattgtcggattttttgtcaataatgtTGATGTGAGTA
AAAACTTTGGTGGTAAGTGTGTTGAAAATGGAACTGTTGGCATACTTCTT
CAATATGTTGAATCTTATCAAAATATATGCTTTGAAGAGGACAAAACTCA
GATAAAAGCATGCTTTATTATGGGTTCTGGCTCAACTAAAAAATCAAAGG
AAGATAGAGAACCACGTATGGATAGTATCCAAAACAACAATAATTCTGAT
GAAGTATCTCTCAACAAAGACGGTGAAACAGTAGTAGATTTTCTTCAGAA
TTTCGAAAACCTGTTACAAACTTGTAGTGGTTTATTTGATGATGGTATCG
ATGCTTTTAAATGGGCAACGGAGAACTCGTGTAACCTTTTTGATCAACTG
ACAAGGTCATGTCTTCGGAATACTGCTGGTGGAAAGAGACATTTGGAGAG
AGAGGAGCGAGAAGAAATCGCATCCAAGGTAGTGATATCTGATATAACAA
AACATTTTACCGACTGTCTACAATATATAAGACAAAATTATCCAGATGCA
CTTGAGAAGGATGAAAAGTCTCTAAAAAATGAGTTTCAGTCTTTAGATGA
GGAAGAGGactcaaaagaaaaacttgaattgacaattttgtttcaaaaaa
taatttgtgcaattgtcggattttttgtcaataatgtTGATGTGAGTAAA
AACTTTGGTGGTAAGTGTGTTGAAAATGGAACTGTTGGCATACTTCTTCA
ATATGTTGAATCTTATCAAAATATATGCTTTGAAGAGGACAAAACTGATG
TCAAATTTGAGAATCTtcgagaaaacaaaagaatccaaACAGTCAACAGA
GTGTTGAGTTTCCATCATaacatttcaaaagatttttgtgaaCACATGGT
GAAGAATAAAGCGATCGAAACCATGGCACCTTATGTCAATAGCACCAATC
CATTGCTGGCGATGAAATCATTGTTGGTGTTGTCACATTTGATCTCAGAA
GAGCAGAATAATATGATCACATCTACAGATGGATGTCAAATTTGAGAATC
TtcgagaaaacaaaagaatccaaACAGTCAACAGAGTGTTGAGTTTCCAT
CATaacatttcaaaagatttttgtgaaCACATGGTGAAGAATAAAGCGAT
CGAAACCATGGCACCTTATGTCAATAGCACCAATCCATTGCTGGCGATGA
AATCATTGTTGGTGTTGTCACATTTGATCTCAGAAGAGCAGAATAATATG
ATCACATCTACAGATGGTCCCATATCAATTCTTCTACAACACTTGGAAGG
AGCTGCCAAATCAAATTCCAATCGTTACAATGGATTCGAAACTTCCGAAC
TTTTGATGGGTTTGTCCAAAATTCTGCAGAATgaccaaaataagaaaaag
GTCCCATATCAATTCTTCTACAACACTTGGAAGGAGCTGCCAAATCAAAT
TCCAATCGTTACAATGGATTCGAAACTTCCGAACTTTTGATGGGTTTGTC
CAAAATTCTGCAGAATgaccaaaataagaaaaagGTTGGAGATCAAGGTG
GTATTGAAATACTTTCCCAGATCATTTACAAAATCACATCATCAAACTCT
GAAGACGAAAACAATATGAAAATCCTAGAGTTTGTTTTTAACTGTATCTA
TTTATTATCCTTCCACGAAGACAATAAAGAGAATATTATGAACAATGGTG
TTATTGTACACGCTCTACATAATTGTTCATCAATGAACAATAAAAGTATT
CTTATTGACGCACATGGCACCCTTTGGGAATTGAAAGATAAGAAAACACG
TGTTCCCATGAAACACCATTATATGAGAAGCAAATCaatgaaatcgaaga
aggcAACGCTCCCTAAACTAAGAAAGAAATCGAGAAGTCACAGCGAATTA
GAATGGAATGAAAATCAGCAACTACCTAATGCGAGGGAACTCTCAGGTTG
GAGATCAAGGTGGTATTGAAATACTTTCCCAGATCATTTACAAAATCACA
TCATCAAACTCTGAAGACGAAAACAATATGAAAATCCTAGAGTTTGTTTT
TAACTGTATCTATTTATTATCCTTCCACGAAGACAATAAAGAGAATATTA
TGAACAATGGTGTTATTGTACACGCTCTACATAATTGTTCATCAATGAAC
AATAAAAGTATTCTTATTGACGCACATGGCACCCTTTGGGAATTGAAAGA
TAAGAAAACACGTGTTCCCATGAAACACCATTATATGAGAAGCAAATCaa
tgaaatcgaagaaggcAACGCTCCCTAAACTAAGAAAGAAATCGAGAAGT
CACAGCGAATTAGAATGGAATGAAAATCAGCAACTACCTAATGCGAGGGA
ACTCTCAGTAAATGAACCAATATCAGGAGGTTCATCCgaaactgaggaaa
aagaagaacaagatgaagaagatgaacaacaacctgaagaagaagaagat
gtagtgataaaggaacagaaATTACAACATATTATGATCTCTTATCAATG
GTCACATCAACCCATCATGCTAAAATAAATGAACCAATATCAGGAGGTTC
ATCCgaaactgaggaaaaagaagaacaagatgaagaagatgaacaacaac
ctgaagaagaagaagatgtagtgataaaggaacagaaATTACAACATATT
ATGATCTCTTATCAATGGTCACATCAACCCATCATGCTAAAAGTTCGAGA
CAAACTGCAAGAAGAAGGGTTCACAGTGTGGATTGATTTGGATGAAATGA
AAGGTTCCACACTGGAAGCTATGGCAAATGCAGTTGAAGATGCTTACCTC
ATACTCGTCACAGTGTCAAGCAATTACAAAGCAAGTGCTAATACTAGATC
TGGTTCGAGACAAACTGCAAGAAGAAGGGTTCACAGTGTGGATTGATTTG
GATGAAATGAAAGGTTCCACACTGGAAGCTATGGCAAATGCAGTTGAAGA
TGCTTACCTCATACTCGTCACAGTGTCAAGCAATTACAAAGCAAGTGCTA
ATACTAGATCTGAAGCTGAATATGCATTTCAACTGAAGAAACCGATCATC
CCTTTAATGATGGAGAGAGATTACAAAGCCGATGGATGGCTTGGTTTCAT
CGTTGGTTCCAAATTATGGATCGATTTTATTGATGAGAACAATATCGAAA
GCTCTTCATTGAATAATTTGGTGGCAGAAATCCATCGACAAGGTTTTAAG
CCTGATAACGAAAATGAGGAAGCTGAATATGCATTTCAACTGAAGAAACC
GATCATCCCTTTAATGATGGAGAGAGATTACAAAGCCGATGGATGGCTTG
GTTTCATCGTTGGTTCCAAATTATGGATCGATTTTATTGATGAGAACAAT
ATCGAAAGCTCTTCATTGAATAATTTGGTGGCAGAAATCCATCGACAAGG
TTTTAAGCCTGATAACGAAAATGAGGTCTTGAAGCCTCAGCCTAGTCCTC
AACCATCCACAAAATTCAACGATCGAGAGGAGCTCCGGAGAAAAATTTCG
CAATGGACACCAGATGACGTGCGTAAATGGATCACATCCAACGAACTGAT
AGTAAATGGTGACGTCATCGTTAAACATTTAGATGGATACGTTTTACTCC
ACTTATTTGACCTTCGAAAAGAGTCTTGAAGCCTCAGCCTAGTCCTCAAC
CATCCACAAAATTCAACGATCGAGAGGAGCTCCGGAGAAAAATTTCGCAA
TGGACACCAGATGACGTGCGTAAATGGATCACATCCAACGAACTGATAGT
AAATGGTGACGTCATCGTTAAACATTTAGATGGATACGTTTTACTCCACT
TATTTGACCTTCGAAAAGAGgctCCAGATACTTTCTACAAGTTCTTAAAG
AAAGACCTCGCATTGGATACGCTGAAAAATCTATTCCAATTTGCGGACTG
TCTGGCCAAACTTTTGGACGATACATGAgctCCAGATACTTTCTACAAGT
TCTTAAAGAAAGACCTCGCATTGGATACGCTGAAAAATCTATTCCAATTT
GCGGACTGTCTGGCCAAACTTTTGGACGATACATGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086_pilon | genome | sc0000086_pilon:804177..810094 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 2161-2268:5811 |
| Aaloc | 1966-2160:4654 |
| Aaloc | 1759-1962:4200 |
| Aaloc | 1597-1755:3485 |
| Aaloc | 1432-1596:3112 |
| Aaloc | 1018-1428:2302 |
| Aaloc | 886-1017:1695 |
| Aaloc | 649-882:1115 |
| Aaloc | 1-648:1 |
|
