XLOC_036961 (mRNA) -

Overview


Name	XLOC_036961
Unique Name	XLOC_036961
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000128_pilon:686085..694137-
coding sequence from alignment at sc0000128_pilon:686085..694137-

mRNA from alignment at sc0000128_pilon:686085..694137-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_036961 ID=XLOC_036961|Name=XLOC_036961|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=8053bp|location=Sequence derived from alignment at sc0000128_pilon:686085..694137- (Clytia hemisphaerica_ch_hm2_pilon)
TTAATCAATTTTGTCCCCTCAGCAGTAACTCCACCATCGACCACGGGCAC
TCTATTAGACATTGCATCTGAACCAAGTCCTGTCAACAATGGAGGTATCT
CTCTCGACTTTCCAACATCCACAACTCCTGCTACTAACGACTCTGTCAGC
AAGTAAGTTTTTAAAAGTTCTTTCAATGAAAATGTTTATATATCTAATTC
TACTCGGATTACTTTGACAAGTGCAGTTGATGCTCTCTAATTCGACATTC
TATAATTTGATAAGCTCCCCTTTTCGATCAAATCAAAAGTCACCGTCAAA
TTTCTTTAAGAAACTCTCATAAACGACGCTCTACTATTCGATATTCTATA
TTTCGATAAGCTCCCGTTTTCGATGAAAAATTGACGTCCTTTGAAGATAA
GAGAGCGTCAACAGTAAAAATCTTTACGGGGTCGAACAAACCGAGTCATT
AACGACAATTTTCGCGAATAAGAGGACAAATACTTCTCGTAATCTTAAAA
ACTTAGGCGATTTATTGGAAAAGAGATGAAAACTGCCTTAATTATGACAA
ATCTTATTTGGACCTCTTTGAAACGTTTGTTTTTTTTACTTAAAGAGAGC
TCTAAGGGACTCAAAAAAACACGAATGTTTTTATGAAAGTTTGTACACCC
TAGAGTATGTGAACGGTTGATGTTCGGTAAACTGCTTCTTAATTAAATTT
GTGCAGATATTAGGAGTAAAAAGTTTGTGAGATAATCCCTCAATCCTTTC
TTTGTCTAGATTCATTTGCAAAAGCAATGGTATCCTTTTCGAGAACGACA
TCATCCAGATTGGTATCAAATCTGAATACAGACAAGGCGTTGGTAGGGAA
ATTTCTTTGTCTAACGTTGAGCCTGTTTAACACAATCGCTTGATGGATAA
GTTCAAGTTTGATACACCTTCGTTTTGTCTATTCAAATTCCTCATACAGT
TTATCTGTTCTTTTAAATCTCTGAAAATCTGGCCTCCACTCCTGAAATCT
GAGTTTTGCAAATTTAGACGTGTGATAAGCCGTGCTATCCACCACTTTTA
ATTGTTAAGTCTTTTTAAAGTAAAGCTTCAAATGACTCAGCCTGAAAAAT
GCCCTGTCCTAACCATTAACAAATAAATTTTCCTTTCCTTTTCTAGGACG
TCTTGGTATATTTTACGGTAACAAAACAACCGTACCATTAACAAACTTTT
TGGTCCAACTTCACAACAACCCAGATGTTTCTCAAAGTATGTTTTCAACT
TTTCGTAAATTTCCTTCTAGAACGTCGTCCCTGAGTCCATGACTGAGATA
CCGGTTTTGTAACTTGAATATCAAAAATAACAAATCTACTATCAAAACAA
GTTAAGTTTTTATTCCTGTACCTCTCTCAACAAATACCAAAAAAGTGAAA
ACCAGAACAAAAAAAATGGAAATCAGTCTGAAATATGAAATTTATTACAT
GAAGCATATAGCGTAATTGATCAAATGAATCTATTCTTTAAAAAAATGTC
TTCCCATAGAAATGGCGGTTGAACTTCAGCCAATCAGTAACGTCATCGAC
AATGGTGCGCAGATACAACAAATGATCAAATGTGAAATTATTGATGTCTT
TGATGAAATCCCCGTGCTTACTGTCTCTTTCAGGTAAGGGCTGTTTTTTA
TGTGTCTTTCAGACACTTTTTTTAAAAAACTAATTTATAAGGACCAAGAA
ATTTTCGAGAATAAAAGGACAAATAGTTTTCGTAAGCTTCAAAACTTTGG
CGATTTATTGGAAAGTGATGAAATTGCCTTAATTATGACAAATATTACCA
AACTATCGTAGATATTGGATAGTTGTGGATGTGTTGTCTATATCTGTCCG
AAGATCTTCAATTTACACATTTAAAACCCGTCCACTATCATCTTTCTGAT
CTTTGATGACTTTTAAGTGGAAACTTTTTATTTTCTTTATCAAAAACAAT
GAGAATTAAAAATACACATTTTTTAGATGTTGGTGGAAGGAACTGTACTA
AAATTTACCAATAATTTTCATTTCTAGAAATTCTCATTTCAACTTTGGAT
CGTAAAATCTTCTTTCAACTTTATATTTTCTTATTTTTACAGTGTTGGCA
CAGCACCACAACAACTGTTATTACAATTACCAGTTTTCTTGACCAAATGC
TCTGTCTCTGCTGAAATGACCAATACTGACTTCTTTAACCGATGGAAAGG
TCTATCCGCGTAAGTTGATTCGCTTTTTTTCATCATGATTTTATTGGTTC
TTCTTACAACAAGAAAGTTTTATATATTTTATATGTATGTGTAATAGAAA
TGCTACGGTTCAAACTGATACGATGCGGACAACGGTGTCCGGACAATTCC
CCCCTGGGGAATCCCCCCCGGTGAATTCCCCCTTTGGTGAATTCTCACCC
ATATTATTTTCATATGTGTTTTTAAGTTTCGAAATCATGGACTGTAACCC
CCGGGGGATACTAGGGTTGGCGAATGACGGGACCTTCGAAAATTGACCCT
TAGAGAGACTGATATTTTTGCTGAAAAGGTGACCCTTAGAGTGACTTTTT
GAATTTTTGTTTTTCGATTTTTGAAAAAAGTCATACCCTTAGAGACTTTA
TTACAATTTTTTTCTCTGGAAATCAAAATTTTTTCTAAAAATCCTGAATT
TTCCGCCCCTTAGAGAGACTAATTTAAAACTTTCAATCGAAACAAACCTC
CAATATTAGGATCAAGGATCTTTACAAAGTTTTAAGAATCACAATTCGCT
TATTTCAAATTACATGATTTTTTAGTTCACCTGGGGGGGGGGGGGATTCA
CCGGGTGGGAATTTTCCGGGGGGATTCACCGGGGGGAATTCACCGGGGGG
GAATTGTCCGGGAATCGCGGACAACTAATGTAGTAATGATTGGTTAGGAT
TGGAGTAGTCCAGCTATATGACATTGATGATAAATAGATAGGAAAGCTGA
GTATAGAGAAAGCTTGAAGATATGGTTTATTTAGATAATAAAGGTGGCTT
ACTCGATATAATGTCAGAGAGATAGAGATATAAGAGCTAAAATTTGTCAA
AGTGCTACCGGGTGCGCCACAAAAAAGTTTCTCTCTTTGAAACTGATTTT
CTCGAAATCGAAAAACTTTAAAAGAATCATTCCTATTCCATTGGATAGAA
GAAAGATAAACTTAAATTTTGATGGGTCATTGGATAAATTCGGTTCATTA
GATCAAAAGTTATGCTCAATTGAATAAAAAAGTTACTTTCAGAAAGTGCC
CAAAAACTTTAAAAATCGACCTATCAAAATTTCATTATAAAACTAAAGTC
TATTCACGATAAGTGTGCACTCTTTTTTCTTTTACCTATAACTTTTGAAG
GGATTCTTCAATCTTTATAAATTTGGTATCATTGGAAAGATATTAGTGAG
TGAAACAATTTGAAATAAAAAAGTCTTTAAAAAGATTCTAAAAATGAAGA
TGAAAATGAAGAAGAAAAAAATGAAGATCTTGTAGAAAAGTGCTATAACT
TTCATTTTCACTGGAGAGATTCTTTGATCTTAGGAAATCATCACTGTGAA
GAAATTTCATTAAAATATTTATTCAATATAAAGTTATGATACAAAGTTAA
TAAGTGATTGACCCCAAAAAACAGCAAAAAACTGCAGAAAACAGCGTTTT
TAGACGTCAATCAGCTTATAACTTTGTTTGATATCTTTTGACTGAATGAT
TATTTTTGAGAATTTTTTTCACAGTGATAACGTTCGATGATTAAGAATTT
ACTTCGGTGAAAATGATAGTTATAGCCCTTTTCTACAAGATCTTCATTTT
TTTCTTTTTCATTTTCATCTTCATTTTTATAATCTTTTTAAAGTTTTTTT
TATTTCAAATTGTTCCACTCACTAATATCTTTCCAATGATACCAAATTTA
TAAAGATTGAAGAATTCCTTCAAAAGTTATAGGTAAATGAAAAAAGAGTG
CACACTTATCGTGAATAGACTTTAGTAATTGCAATAGGCTTTACATGATT
AAGAGCATTTTTCAGTAACAAAACATAAATTTTGAAACTGAAGGGTCGAA
AGGGTTAAAAATCTTCATCCAAATCAATTTATTTTAGTTTTACCGAAATT
TCCCTCAGATTTTTGGTTCTAGACTGGATAAAGTCTATGTAAGGCTGAAT
CTAGCTCGAAACCCATATTTGATGTATTTTTAAAATTTTACCAGATTATT
TGGCCTTTTTCGACGAATTTTCTTCCTTTCATTGAAATTCAACCTTCCTT
TAAATAACAAAAGGTCATTTAGACAGCTAATTATCATTTTTAATGACTGA
AACGAAAATACTGATATATCATGTAATTATGCTTCTGTTTAATTTGATAG
GTAAATTTTTAACGTTTTTGAGCATTTTCCGAAAGTAACTTTTTTATTCA
ATTGAACACAACTTTAGATCTAATGAATCGAATTTAATAAATGACCCATC
AAAATTTAAGTTTATCTTTCTTCTTTCTAATGAAATAGGAATGGTTCTTT
TAAAACTTTTAGATTTCGAGAAAATTCGTTTAAAAGAGAGAAACTTTTTT
GTGGCGCACCCGGTAGTTAATTGCCCCCGCAACGAGCGCAGCGAGTGAGG
AGGCACTCATAGCTTCAGGCGCAAGGATTGTTGGACTGGAATCTCGCATT
TTTGTTTTGTTGTTGTTGTCGCGCAAGCCTACCCGTAGTTAGTCTCTTCC
GTAAATGTTCGGTATCTTCCGCCGGTTTTTTACAGCTTTTATTTTTCACG
TCAAGCGCCGCGGGAATTTTACACTGCTTTTTAGGGCGGGTTTTCATTTC
TTCTTATATATAAAATTTGTCCGATTGGTTAACATTCAGGAAAGGAAGAA
AATGTAGATGCGTGGAAATTTCTGGAAGAATTCAAAAACAAGTAGTCTCT
CCTGCAGTCAAGACGTATTATTTGTGACTTTGAGTGAGATACAACTAGAT
ATAAATACCTTACATTTATTACTTCCAAGTTCTAAGTGATTACAATAATG
TGAACGAATTGATGTTTAATTTTTACCACAGAGCGATAATGAACAATGAT
TAAAATGATAATAGTAGAACAATAATGAATGAATAATGAACAAAAGTGAT
TATTGTTGGTGGTTGAATTGGCAACAAAATTCTAACACTCGTCATTCAGC
ATACTCTACTCCATCAAGAATGCATAAAGATCCTGTATTATAGTACTTTG
ACAGTAAGTACATTTTTTTCATTAAAAGTGTGCTTTTTTTATAGATCTAT
TATGCAGTTTTATGTTTAGCATTTGTTCTTGTTGACACTTACCAAGCACT
ATTTGGGAAATTATTATCGGAAATTGAAAGAACCTTTTGTGTACTATTTT
GAGGAAATTTCAGTACACTCATCATATAGAATCTAATTTCATGTTTCTTA
TTTTCAATTTAAAGCTTATTTTATGAATGTGGATTCGTTTACTACCTTGA
CAACGCAATATTACCTCTTTACTGCTACTATTACCATGTTACGTCATGAT
TTTCCATCCTCCTACACGATATTGCTGTTACAACTGCAAGATAACCGGCA
TATCTTTTTAATGTAAAAACAATTTTGTCCATGAGATCCCTTATCATGCC
GTTGGAAAAAGTCCTGAATGTACGCTATTTCCTGTTAATACCTGCTTCCT
GCTCATCAATATTGCCTCGTTACTGATACTATTACAACGCTACGTCCTAT
CATCTTCCATCCTTTACACGACGCTGTTACAGCTTCTAGATTACTGGTAA
AATCCATTTAATGTAAACAATTTTGGATCACGATATCCTTTGTTAAACCG
TTGGAAAAACTCCTAAGTACCGTCAACTGCTCCAACTTGGGACGAGTGTA
CGCAACATGGGACTTGATATCTGGTCTGTATTTTCACTTACTGTAAAATC
GAAAGAGAATCGTGTATTTTTTAATACGTGGTTCATTAAACTCAATTCAA
ATGACTCTGGAGGTTCGGTGAAATGGTGGTGGAATGGCCGTCCCATGTTG
CGTAAGATAGTCCCAAGTTGGAGCAGTTGACGGTACGTTGTTACCTGTCA
ATTTTTGGTTCCTGCTCGTTATGTTTCTGGCTCATAGCATTTCTTATGCT
GTTTGGTTCTACTATGTTTCATTTATATTTCAAATTGGTTGAAATAAATA
TAGTTGCATGTCTTTTGACTGGTTTAGTATCTGTAATTGATTCTACATGG
ACACTTTTCCTAATGAATGTTTTAAGATTCGTATTTTATTCTTTGTAAAA
AGTAATTCACATTTTTAGAAAAAAAATATGTTTCATTTATATGTTAGCTT
ATTCATTGATATCTCAAAGAAAATGCTGTTGAGAAGAATCATTCTAACTA
TTCCAAATAATTTCCAAACTTTTGCTATAAAGCATTACAAAGCCTTAATT
AGCATTAATTAGTTTTTACAAGCATTGTACTAGCGGGTGGCAGTTAGTGA
AAGCTATGGCTAGTAAGTTATAAAATACTAAATATTAGGAAATAAAAAAC
TCTCTCGATCAAACAGCCTTGTTGATTCCTTCCTCGTCTGTCACGAGGGA
GAAATGGCGGGTAAACACTCTATATTTAAAAACCTTTCTTGTTAGAACAC
ACCCCAACTCTTCTGCTTCATAAATTGTAGACTTTTTTAATCAAAACTTA
ATGATTTTGAATTCAGGTTCGCGCTCTTTGTTGTTTACTCTTTGTTTTCA
TTTTCAGACCTGGTCAAGAAAGTCAAAAGATTTTCAACGCAAACTTTCCT
ATCGATACTGAAGCTTCCAAACTCAAGGTTACTACACTTTCTAAATCAAG
AAACACACTCTCAACTATTAAAATTTCAATCTTTATAATCATTAGCAGTT
ATAATTGTTACTACTATATAACTGAAATTTTAAATACAAAATACTTCATA
AGGTTTTGAGTGAGAGTCTAGTACATCTTGTCTTGGCTTTTGTTGATCTC
TAAAGACCTCAAACAACCTTGGACCCCTTTCGATTATATATTTTTTATCT
AGTACGACGAAGAAACGTTTAATTGTATTATCATGTTATTTTTCAGCTTG
TGGGCTGCAGTATGGGATTACTAGAGGAAATCGATCCTAACCCAGACAAT
TTCGTCACCGCTGGTATCATACACACACGTCAAGGGCAAATCGGATATCT
TCTACGTCTCGAACCAAACATACCAGCACAGGTTTGTCTTACGATGTTAT
GTTTACATTGGATATTACCAAATGTTATCACCTAAAGAAAGAATGAATGC
ACATTGTTAGATTTGTTTACAAAACTGTCGTCTGCAATTAAATGTTTCTT
TATTGCACTTATAAGCATATATAGTTTCAGATATGGCAAAAATTCAAGCA
TAGGCTAAGAGTTACTTCGAGCCTACGAAATATATATTTTCCAATTTTGG
CTGTTTTTGATTTAAGGAATTTCCCTCAGGATATAAGCCTCCTTCAGCCT
TGCCAATCTCTTGACCTAAGCATCTCTGAATCAGTTGTTGGATTTGTGTA
TGCGTGTAAAAGTAAATCGATTTCTCACATGAAACGCAAATCTTGTTCGG
GCTATGAAAGGCTCGAACTTTAGAGAGAGTACTTAGTATAAATTGAATGA
CTCCTTAACAGAAAAAGCAAGTAGGACTTCGAAGTTCGTAATTTCGTTTA
AAAAAAAAGATGGAGCACATTATTAAACTTATCAAACCTAGCCCTGCCAG
GGAATTAGACTCGATCTTACTAAAGGTTTGAACGGGTTCAGTTGTCTGTG
TCCACACGATGACATAATCCGTTTCAATCACTTCAAACGTTTTCTTCTAA
CATACAAATACTTAGCACTTCCTCAATTAGTGGGCCAATCACGGGTCTTC
GGCAACCAAGGTTGTACTGTGTTGGCCTCGCCTCAAGTTAAGATTTGCTA
TTAATTTCCTGCCCTGGACCATAATCAGTTACAGAAAATGCTGATTGACT
GATTGATACTTTATTTACTTTATAGATGTATCGTTTAACAATTCGAGCAT
CACGAGCTGGTGTAGCTGACATTCTCACCAATGTTCTCCAAGATCAATTC
TGA

Coding sequence (CDS) from alignment at sc0000128_pilon:686085..694137-

>XLOC_036961 ID=XLOC_036961|Name=XLOC_036961|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1698bp|location=Sequence derived from alignment at sc0000128_pilon:686085..694137- (Clytia hemisphaerica_ch_hm2_pilon)
TTAATCAATTTTGTCCCCTCAGCAGTAACTCCACCATCGACCACGGGCAC
TCTATTAGACATTGCATCTGAACCAAGTCCTGTCAACAATGGAGGTATCT
CTCTCGACTTTCCAACATCCACAACTCCTGCTACTAACGACTCTGTCAGC
AATTAATCAATTTTGTCCCCTCAGCAGTAACTCCACCATCGACCACGGGC
ACTCTATTAGACATTGCATCTGAACCAAGTCCTGTCAACAATGGAGGTAT
CTCTCTCGACTTTCCAACATCCACAACTCCTGCTACTAACGACTCTGTCA
GCAAATTCATTTGCAAAAGCAATGGTATCCTTTTCGAGAACGACATCATC
CAGATTGGTATCAAATCTGAATACAGACAAGGCGTTGATTCATTTGCAAA
AGCAATGGTATCCTTTTCGAGAACGACATCATCCAGATTGGTATCAAATC
TGAATACAGACAAGGCGTTGGACGTCTTGGTATATTTTACGGTAACAAAA
CAACCGTACCATTAACAAACTTTTTGGTCCAACTTCACAACAACCCAGAT
GTTTCTCAAAGACGTCTTGGTATATTTTACGGTAACAAAACAACCGTACC
ATTAACAAACTTTTTGGTCCAACTTCACAACAACCCAGATGTTTCTCAAA
AAATGGCGGTTGAACTTCAGCCAATCAGTAACGTCATCGACAATGGTGCG
CAGATACAACAAATGATCAAATGTGAAATTATTGATGTCTTTGATGAAAT
CCCCGTGCTTACTGTCTCTTTCAGAAATGGCGGTTGAACTTCAGCCAATC
AGTAACGTCATCGACAATGGTGCGCAGATACAACAAATGATCAAATGTGA
AATTATTGATGTCTTTGATGAAATCCCCGTGCTTACTGTCTCTTTCAGTG
TTGGCACAGCACCACAACAACTGTTATTACAATTACCAGTTTTCTTGACC
AAATGCTCTGTCTCTGCTGAAATGACCAATACTGACTTCTTTAACCGATG
GAAAGGTCTATCCGCTGTTGGCACAGCACCACAACAACTGTTATTACAAT
TACCAGTTTTCTTGACCAAATGCTCTGTCTCTGCTGAAATGACCAATACT
GACTTCTTTAACCGATGGAAAGGTCTATCCGCACCTGGTCAAGAAAGTCA
AAAGATTTTCAACGCAAACTTTCCTATCGATACTGAAGCTTCCAAACTCA
AGACCTGGTCAAGAAAGTCAAAAGATTTTCAACGCAAACTTTCCTATCGA
TACTGAAGCTTCCAAACTCAAGCTTGTGGGCTGCAGTATGGGATTACTAG
AGGAAATCGATCCTAACCCAGACAATTTCGTCACCGCTGGTATCATACAC
ACACGTCAAGGGCAAATCGGATATCTTCTACGTCTCGAACCAAACATACC
AGCACAGCTTGTGGGCTGCAGTATGGGATTACTAGAGGAAATCGATCCTA
ACCCAGACAATTTCGTCACCGCTGGTATCATACACACACGTCAAGGGCAA
ATCGGATATCTTCTACGTCTCGAACCAAACATACCAGCACAGATGTATCG
TTTAACAATTCGAGCATCACGAGCTGGTGTAGCTGACATTCTCACCAATG
TTCTCCAAGATCAATTCTGAATGTATCGTTTAACAATTCGAGCATCACGA
GCTGGTGTAGCTGACATTCTCACCAATGTTCTCCAAGATCAATTCTGA

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_036961	XLOC_036961-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000128_pilon	genome	sc0000128_pilon:686085..694137 -

Properties


Property Name	Value
Aaloc	772-849:79
Aaloc	637-771:1008
Aaloc	568-636:1346
Aaloc	451-564:5961
Aaloc	328-447:6543
Aaloc	238-324:6906
Aaloc	154-234:7294
Aaloc	1-150:8054

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XLOC_036961 (mRNA) -