XLOC_036894 (mRNA) -

Overview


Name	XLOC_036894
Unique Name	XLOC_036894
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000026_pilon:429807..435178+
coding sequence from alignment at sc0000026_pilon:429807..435178+

mRNA from alignment at sc0000026_pilon:429807..435178+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_036894 ID=XLOC_036894|Name=XLOC_036894|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5372bp|location=Sequence derived from alignment at sc0000026_pilon:429807..435178+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAAGAATGCATCCTAGCGCTGCTGCTGCTAGCGCGAATCTGTACATC
TTGTAAGTGAATATTAGAAATTCCTTAGCGTCGTGAGTCCATGTGTCGAT
AGATAACagtataattttcttaaaagcaGCCGACTCAcagatttcaaaaa
tcaaataaaattgaaatctgTGAGTGGGCTAATATTCTGTTCcttttttt
gaccaatcttgctccacatccgtgtcaatccaatgtgacaaagcttgtga
attaaaagtgatgagtaagcaaacgatattacACTTACTTAaagacaaaa
cctttaatatttTAACTTTCCTTCGCCTTATTCAGGTGCACAAGATGTAA
TCGAACCGGGTAGTATCGATCCTACACCAAACATACCACCTGCTGATGAC
CATGGTGCTTCTCAACTAATGTCACAACCAATGCAATCATTTCATCAATC
TTTTTCACCGTCAGCCTCACAAAGTGCAATGCCAATGTCACAACCAATGC
AATCATTTCATCAATCTATTTCACCGTCAGCTTCACAAAGTGTAATGCCA
ATGTCATCTGCCATTACTACGGCTCCTCCTACCAGAAAAGGTAACCCTTA
tcaactaccttatcggccaaaacttagtcggcctttagtgactaaatttt
gacaaggtgactaaaattaagggCCGagtaagttttggccgataaggtac
tttaATAGGATGAATTTATGCGAAGCTTAAATTTCGATGTTGAGcatatc
cgcgaaattttaaaaattcgcGGGCATAATTTCGCGGATGGTACTATAGG
GAGACAATGTTTTCCGAATTTTGTACCCTTTAACGCCAAATTATGCATGT
TGCTTGtcgaaatacgcattattagcgcttctttgatacCAGTAAACATT
ATAAAAGTATAGTTGATTTCCCGTTAGTTCTATTTTGAATCCTTGAATAc
atttgatgatgtagcgccatTTGACGTGAAATTTTTAACACATCAATGGC
CTTGCAGGtacaccaaaaaaaaaaaactccgattaaaGATGGCGAGTGTA
ACTTTTTCCAGAGTTTGTAAAGGTGGTCCGATagctttgaacttttttta
ctCCATGTGGTGTAGGAAAAGATCTACAGAATTAATCTTTCGAATCACGT
ATAATGTTCTATGTGTTAATGTTATAAGAAccgtaaattttggctgaagc
tCGACTgttcttgaattgttcttattattgttattttcattAAGTTAGCt
ttttttCAGTGTCATATTCTGGTATTCTgcaataaaaaaacattacataT
ACTGTATACATTTTTTCAGTTCTGTTCCAATGTAATTTCGAAAGAGATGC
ATGTTCACCTGCAAGCACTGGTGATTATTGGGAACGGAGAAATGGCTCAA
CACCAAGTTATGATACCGGTCCTTCAGTAGATGCCACTAcaggtatgtca
aaaattattttcgttgTCAGTCAACCAGACTTTACCTTGGTAATCAATAC
TATTAATCGGATAAACTTTTGCgatattaaatttcgcgattttgcgaatt
tttgccattttcgccaaattaaaactcgcgaaaacgcgtgagatttctga
ctcgcgaaattagatctaccacaaaatttttaagattgtATTTTCGGTGG
AGAAACCAGTCCAAAGTCTCAAATTGTggtaaaaattgctatttttcagc
cgttttcaggcttattcgcgaaattaaatccacgcgaaattcttcaaaac
tctgactctaAATCTGACGAAATTAAATGCagaaaatagttccatttata
TTGGGACGGGaaaatcgtctgagacgagtagtttgtaattaatcgtctca
gtataaacagtgccgtagcaactggggggggggcaataaTGATGAAGTAT
CTCACTAATATCGatcatttgaaagaaattttttttcgaaattctgatta
cgtcagcaaaaaataggatttttccttttttctaaatttctgctgacgtc
atgaaaatttaaaaaaaactcatttttcaacagatcgactttagtaagat
acatctttggtgaaagtttgaagacaattggataaactattctggagaaa
ttcaatttttagttttgttacacatcaggttagaaactacatcatagtac
ccttgatgttcagtcatttatttggtcgttttctgtcggctaatgcgatc
taaaaattatggtaattttaagacatgccataacttacccgagccCTCAA
TAAGAAAATGCTTTATACGGCACTGAAAGGTATTATATATGAATCTTAAA
TGAACAATATTGCATAAGTACGGTCATTCTTTTCACTTCCTACATTCCGA
CTTTAGCATGGAGTTTTTAAGAGTAATCctcttaaaaataataaaagctG
ATCTATGCTCTATGCCAAGTTCAACCTTAATTGTCAACATCCACAATAGG
TTCAGTTTAGGACGAAATTAAGACTAATCTAAATACATAGGCAAGACATT
TCATTCTGTGAAGGTAATGCAACTGCACACAAAAGGCATGGTttgccctc
gcggtgtcactaaacttcagccccccccccccccaataagaaAATGTTTC
CTACAGCACTGATAAATAGAACTGATTTCGCGACTTTTTTCGGTCGCAAA
ATCTAAtcctgcgaaatttaatccgattaatgTATAACATTCAtggtcga
aatggatcatgggtaatcagggcTGATGGGGCCCACCTAACGGCTCTACA
ATGGTTGGACGCAGAAATGCTCTACATATAATATAATgttcgttttgtat
aagattcccatttccgcactaacatttttgtcacttttccggaatTTTTT
CCGCTAAAGGTATGGAAAATGTTGtgtttatttacaaaaactgCCTAATC
CTCGGAGGCTTATTACCCGAAATCCTGGTCTTTTTCTGcttgaaaagtgg
caaaggaatctgaGTGCGGAAAATGAGAATCTTTACAAATTTCTTTATCA
TATAGGAACAAGTGCCGGTCATTACATCCATTACGAATCGTCCAATCCCC
CGTCAGACAATATCGATCTGTTAGAATACATACTACCGCCGACACGCTCA
CACATTTATTGTATCTCTTTCGCTTATCATATGTACGGGAGTGATATCGG
TACCTTAAGAGTTGGTGTACAGAACCCGCTCCCGAACtttttttGGCAGA
TGAGTGGTAACAAAGGGGATCGTTGGCATCGTGTACAAATCAGTCACCTT
TCGGTTACGTCAccattttttcctttcttcCAACCAGCCAGAGTAAGTGC
AGTTTGTTaacagttttgaaaatcttcaaatctCGTAACTGCTCGTaata
ggcttttccagaaaaaaatttttaaccccactgttgaggatattgatttt
tcgaagtatcgaaccccctggatatccactcttaaaaatatcctcaatcc
cctggatatcctctcttataaagatgcttaccccctagatatcgtatttt
tcacttgaaaagacactttacccctgaATATctgctcccttgtagatatt
taaccccctggatatccgatatcctcaacggaatatttctggaaaagccc
attctggGTAGCGTATTAAATTTGTGATCTTTTTAGGATGGGGGCTTATT
CGAGGGAGCTTTTAAAAGAGGTCTAGCGCacatagaaaaggggatagact
ttTTGACTCTGGGCACCTCCAACAGTAGCCAAACAAATGTACTTACTTTG
AAAGATGGGTTTTTATTTAATGCTTCTAAACCAagttcatttttaaaaag
ttattcgtAAAGGTAATCGTAATACCTTATcagccccttttacgccggct
tttggtgttatttttgaataagggccggcgtaaaaggggccggcgttaaC
TTAGGGCCGGCGTTAacttagggccggcgtaaaaagagccGATAAGGTAC
GTAAAGTTTAACGTAATTCTTTGTGTACAAATGAGAAATTTTAATGATGT
TGATGGAGTCAAAATTGGATCAAATACTAAAATAATGCACGTCCTTCTTG
AAGACGtttttttAAGGGGCGTTTattggaaatcttttttttaaggaGGA
TATTATAGTATAGTTgattctcgctaattcgaacccgaaaagggaaattt
tttgttcaaatttgaattcaaatttgaattatagaaagtgcATTAAGagg
atttcaagaaaaaattacaGGGGGAGGGTGGaggaaccttttcaagtcaa
aaacattttttggaaatgtgtggataccccctggaaaatggcaaaattca
CAAAGAAatcttggaaaatttcttttcatacttTAAATTTAAAGTTACGG
TGGGAGAGctaaatcagtcttttaccccctgaaaattttaaaataatttt
ataccccctggaaaaatgactTATTTAGACCTATTGGAAATTCTGCTCGA
ATTATCCCTTGGAAATGTTCGTGTAGCATCCCccattatcagacaataga
aactttttcaaagtaaaaacctttctttttaacaattattaagtatgaat
ttgttttaaaattcgaccctcaCAGAAaaacacccttacagtgcattttg
ggatgctgaaaaacccttaagcgcggcacatgacgtaggccagataaTAT
GAGTGATAGTGAGTGAGTGATATATTCtatgaaaactcaacctctgatat
tCAGGGTACCTTTATGGATATAAAATTGAATGACCCGATTACTTAACAAT
ATTGATCTGAAATTTAAAATTTAATAAAATGAAAATTAAATCTTTATATG
TTTTTTGATTTCTACAGCTTATTTTTGAAGCACGTCGTCCTCGAGGATGG
GAAAGTGACTTTGCAATTGATGACATTGTCGTAACTGAAAGATGTGATGA
TAGTAGTAAGTATCTCTAACCTTTCCCCAGGCAAGAAAAAGTGAAGCCAC
TTATTCCCCATCCAGAACGCGCCTAAAACCTGCCGCAATCATGACGACGG
ATTGTACCTAGCGATTCCTTTGTTTTTGAGGACTGCTTTTTTTGAATTTA
CATTCAATCTGGCGTTTGTGTAAAAACCACGCGCGAGCGTTCTGGATGGG
AAATAAGTGGCTTCATTTCCCATCTAGGAGTCTCGCGTCTATAGCCGTTC
TGGTTTGGAAATCAATGGTGAAAAAAGCCTATAATAATGATGTCATTATT
TTACCTTACAGCTAATAAATATTATCATCATTGGGTTGTCATCTGTTAAA
TGTAGAATTAGCTTTTTGGATTACCTTTCACGCTGTTTCGCGATATTGCT
CCCGCTTATTGTATGTTCGTTTGGAATTTTAAGATACATTTCCGTTTAGA
TACAACGACGACAACCACTTCC

Coding sequence (CDS) from alignment at sc0000026_pilon:429807..435178+

>XLOC_036894 ID=XLOC_036894|Name=XLOC_036894|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1788bp|location=Sequence derived from alignment at sc0000026_pilon:429807..435178+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAAGAATGCATCCTAGCGCTGCTGCTGCTAGCGCGAATCTGTACATC
TTATGAAAGAATGCATCCTAGCGCTGCTGCTGCTAGCGCGAATCTGTACA
TCTTGTGCACAAGATGTAATCGAACCGGGTAGTATCGATCCTACACCAAA
CATACCACCTGCTGATGACCATGGTGCTTCTCAACTAATGTCACAACCAA
TGCAATCATTTCATCAATCTTTTTCACCGTCAGCCTCACAAAGTGCAATG
CCAATGTCACAACCAATGCAATCATTTCATCAATCTATTTCACCGTCAGC
TTCACAAAGTGTAATGCCAATGTCATCTGCCATTACTACGGCTCCTCCTA
CCAGAAAAGGTAACCCTTAtcaactaccttatcggccaaaacttagtcgg
cctttagtgactaaattttgacaagGTGCACAAGATGTAATCGAACCGGG
TAGTATCGATCCTACACCAAACATACCACCTGCTGATGACCATGGTGCTT
CTCAACTAATGTCACAACCAATGCAATCATTTCATCAATCTTTTTCACCG
TCAGCCTCACAAAGTGCAATGCCAATGTCACAACCAATGCAATCATTTCA
TCAATCTATTTCACCGTCAGCTTCACAAAGTGTAATGCCAATGTCATCTG
CCATTACTACGGCTCCTCCTACCAGAAAAGGTAACCCTTAtcaactacct
tatcggccaaaacttagtcggcctttagtgactaaattttgacaagTTCT
GTTCCAATGTAATTTCGAAAGAGATGCATGTTCACCTGCAAGCACTGGTG
ATTATTGGGAACGGAGAAATGGCTCAACACCAAGTTATGATACCGGTCCT
TCAGTAGATGCCACTAcagTTCTGTTCCAATGTAATTTCGAAAGAGATGC
ATGTTCACCTGCAAGCACTGGTGATTATTGGGAACGGAGAAATGGCTCAA
CACCAAGTTATGATACCGGTCCTTCAGTAGATGCCACTAcagGAACAAGT
GCCGGTCATTACATCCATTACGAATCGTCCAATCCCCCGTCAGACAATAT
CGATCTGTTAGAATACATACTACCGCCGACACGCTCACACATTTATTGTA
TCTCTTTCGCTTATCATATGTACGGGAGTGATATCGGTACCTTAAGAGTT
GGTGTACAGAACCCGCTCCCGAACtttttttGGCAGATGAGTGGTAACAA
AGGGGATCGTTGGCATCGTGTACAAATCAGTCACCTTTCGGTTACGTCAc
cattttttcctttcttcCAACCAGCCAGAGAACAAGTGCCGGTCATTACA
TCCATTACGAATCGTCCAATCCCCCGTCAGACAATATCGATCTGTTAGAA
TACATACTACCGCCGACACGCTCACACATTTATTGTATCTCTTTCGCTTA
TCATATGTACGGGAGTGATATCGGTACCTTAAGAGTTGGTGTACAGAACC
CGCTCCCGAACtttttttGGCAGATGAGTGGTAACAAAGGGGATCGTTGG
CATCGTGTACAAATCAGTCACCTTTCGGTTACGTCAccattttttccttt
cttcCAACCAGCCAGACTTATTTTTGAAGCACGTCGTCCTCGAGGATGGG
AAAGTGACTTTGCAATTGATGACATTGTCGTAACTGAAAGATGTGATGAT
AGTACTTATTTTTGAAGCACGTCGTCCTCGAGGATGGGAAAGTGACTTTG
CAATTGATGACATTGTCGTAACTGAAAGATGTGATGATAGTAATACAACG
ACGACAACCACTTCCATACAACGACGACAACCACTTCC

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_036894	XLOC_036894-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000026_pilon	genome	sc0000026_pilon:429807..435178 +

Properties


Property Name	Value
Aaloc	874-894:5352
Aaloc	784-870:4818
Aaloc	499-783:3008
Aaloc	376-495:1322
Aaloc	55-372:338
Aaloc	1-51:1

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XLOC_036894 (mRNA) -