XLOC_036876 (mRNA) -

Overview
NameXLOC_036876
Unique NameXLOC_036876
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000010_pilon:1051388..1060675+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_036876 ID=XLOC_036876|Name=XLOC_036876|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=9288bp|location=Sequence derived from alignment at sc0000010_pilon:1051388..1060675+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGACTGATTATGAAAGAATACtgtgtgttaaaaatgaagtttttatgTA CAAGATACCCCCAAGGAATAGTGCAAGAGGATATAGGTAAAACTTTTCTT TCTATTCGTCAATAAATTTAGGAACCAAACACCccccttttttttctttt tttttttggaatcgcaATCAagccaatcgaacgtaatcgaatgcgATCAA ATAATTGGGATTGATTGATTGtagaacgtaatcgaatctcaatcgaacgg ccgattcctgggtaattttgattcggcgttcgattcgttcgattgacaca cCGTCACGTgcgcgtttggtttgggaacgcgaaacacgaacgcgaactac ccatgtctaaacttttcaatatatctccagaactaacagattttttgaaa ttctgtaaaaagctctaagttcctgaatagttttactatgttctgtgaaa aaatcataaccatcagtcaaatactcgttcgtCTATCTTTACTTGAAATA GGGACGGGataaggccgatgaaatttacatatgagtttaccgtcgtgaac ttacccaaaaatagatgcggcatgatttcattattcattattcattattt tcccaacagcaccttatccaccatttctgccaatcatgctctctcaaaat aaaaaaatttgcttcGCTTAAACCCTTCGCATcttttgcgaacgaaaaat aaagatcgattgctacagtggcgctagattttgcaaaaaactaaaatggc ggtcagggcggtttggcagatatatgggcgggacgcccactgcagttgta ggattgagggcggcagcattttctgtaataaatcttctttgtttacccgt gtaaacatgcgtatagacgattttaacaaagatagaggttgtagttgtaa agaaatatggaaataatgaaaaatttatgaattttgaacataatgaaatt ttcatgcgggtgctttttagagatgcgggcggccgacggtaaactcatat ataaatttcatcggcctaaggctgggacaatctatttaaaggatatggac aaaaaaggcacttttttgggtgataattaagattttacttaaaaacttta attctcttacccccgtctcgccccccccctgatatgagcaagggaaccat aatggccacccctactgaaaatttcagatcaaaataaacaaggaattaat tcctgtaacttgaagaaaattggaaaaagctggtttttgactgtttctga tcctaaagtgctatttagtaaaagctatgcaatttatgtttggatttcta gaaagcttacccattcattgttaatacattttttatttgaaagtaatctc ttcatggaataaaaagatacagtcaatcttgtagggtcatttttcaaaaa ttttttgccaaattcgatttttgcatttcgccaatttaacctacgcaaac gcacgtgccGTCTGGGGAAGTAGATAGATAGAGGATGGCACAAACCACAC AAAAAGCCAGTCTAGAAAGGAGGAAAATATTACGTCCGAGATGCGCCAAC TTAACTGGGAATAGTTGAAAgcaggctggaacttcgatttttgaggatta cgattttaccagttttttagcaatttttgcctcgctaacccaaatctcgc aacctctttaccttaaggaagatcgaaattagagtttttcagcattccga aaaaaacgcatagcagaaattttttcatcttcacaggattgattctcaac aacaaaatacatcttttggtctttgggtttgtttctgacttttttccttc aaagaatatcaatcactttccttttccccttgagcgtgcgagaaaaaaat gattagctcgcgttTTTGCGTGTGGATTTGATCCACTCTTTATGATAAAA AAGCTACCGTTGCTTGGAGTTGAGGCTTCTTCACAATCACAATAAGTttt gtccgaggacttcctctaaccttatatGTCCAGCTGCCATccttttgtaa ttttgttttctcctttgcctTTCTATGCCATTCTTTGATAGTTTCGCGtt cttttttcaagaaatcaTTGGTTACTCTAAATTCGTCTTACTTTAATTTG TGGACTGATGCCAGAATCTGACGTTTCTCTTCTTTGTTCTTTAGCAGTGT GGCTCGAATCcttcagatccttggttagaaaaagctacacctgtttactt ttttcttgccagattcaacaagccatcaacaaaCAAAATTACCAATGACA TCTGAAAATTCACATGACCTTTCCACAGtagacacttctaaattatATGC CATTAGGAAGATATTcagaaattaaccaatcgggtttacaatcggaattA ATACTGTTTTACCTGGGGTTAAAcgtataaaagaaaattgaaacggttta tttttttcttcattatatatttaagtttccgttatcaaaattctagaaat gctaatttgtagaccatattagaaaatgtttatatatttcGCTAATTAAA CACTTACAGAAAGATATAtttcttactatttttaccCCGCTTTTTAAACA TCGTCTTCTGTGGGCATGATATAAGGCAGAGACAAAACACCCTCATCGTA AGATTCTCGTGGGTCGTCTCATTGTTTGTTCCTTTAGTCAAGTCTGTTgg tcctattgttcatgctaaatccatacacgatgatgtcaatgtttggcggc atacctgaaaataaaaacaaaaagattattattatttttgcataaattac GCTACATTATACgttattataaaattatacaaaacgagAGCAAGGCTAGA CCGCCCGCATAGAGAGCGTGAGCCCTAATATTTCAGGGCCATCAggggaa aacaaaagtgatcaatgttcttcgaaggaagaacttgtaaaaaaaaactc tagacaaaaagatgtctttcgaggttgggaatggatcctgcCGAGATGGA AAAAAGTTGACTAGGGtttttttGGCAAACCCAAAAAgtactctaatttt ttttcttccctcaagccCTGTTGAAGcccctgtacaatttttttttgaat agcccaatgattttccaaaaaaaagattgccctggtgggattcgaaccca ctaaatgcaaagttccaatGATCAGAAACCCAATGCTCTAACCACTGCAC CATAGATTCATGCCAAGAGAGTGTTTCTGAcagctatttatattgtacaa actacagaccaggctataataagagaaaatcacaaaatagtGTTTATTTC AAGCTCCAACCCTGgtaccctaactgataataacccaattcctagccaat ctgatacacaaccacacccaaatcacatccatacccaaccacacccatac ccaaccacacccatacccaaccacactcatacccaaccacacccataccc aaccctactaATTTGTCTGCAGGTCCTGACAATATTCCTGCATGCCAgat cagaaaaatatatttgtgtccTTTGCTTTTTTGAAGAAGCCATCACCTGG CATCGTTGCAGCATGAGATTCTGGACTAAGATTCCACTGACTTTTCccaa gaaaatttcttttactttattttcacttactgtttaaatctctttgacaa caagtttgttttgatacttcaaccaagtttatcaatcaaactttcgcCAT CCCATAATCACCAAATGTATATTTAAAGCATTTTGCATAATTTGAAGaag taattaacaatttaatcacACACTCGCTGTTCACTCGTCTGATAACATCT TGATGGCATTATttgttttatgttgtttttctctagagACGCTTTTTCCA GCATGTATTATTGATTGACATGTCAAAGTTACTGAGTGTCAAtaacagat ctcacaattttccGCAGAAGAACAGACTTTTATTATATCTGTTCTGGACC CTTGTGCGATCGCATTTAGGGACACTGTCAaatcaaatgtacaaaaagtg cACACTGTTAAAATGGAtgataccgggtgtgccacaaaaaagtttctctc tttaaaactaattttctagaaatctaaagattttaaaagaaccattccta cttaactggaaagaagaaagataaacttaaattttgatggttcatttatt aaattcgattcattagatcaaaagttatgttcaattgaataaaaaagtta ctttctgaaattgttaaaaaacgttaaaaatcgacctatcaaatcaaaca gaagcataattacacgatacatcagtattttcgtttcagtcattaaaatg ataattagctgtctaaatgaccttttgttgtgtaaaggaaagttgaattt caataaaaggcagaaaattcgtcgaaaaaggcaaaaaaatctggtaaaat tcatgaaaatacataaaatattggtttcgaggtagatccagccttacaca GACTCTATCCAATCTAAAACCGAAAAtcggaggaaaatttcggtaaaagt aaattaaagtgattttgatgaagattttataCCCTTTCGGCCTTTcagtt tcgaaattttaatcatgtaaaggttattgcgattgccaattttatataaa aatttgataggtcgattttcaacgttttcgagtactttcaaaaagtaact tttttattcaattgagcataacttttgatctaatgaatcgaatttaataa atgacccattaAAATCTAAgcttatctttcttctttccagtaAAATAgga attgttcttttaaaatctttagatttctagaaaattagttttaaagagag aaacttttttgtggcgcacccggtataaaagGACATGTTCATTAAAAGCC ACTACTAAATCAATCATTGAAGAATTTCAAAAGTACAACTTTAGCTGTAA CtttttttGTAATTGTCACTCACAGGTCAATGGAATTTTTCAAGGATTCT TTAGGTAAGATAAAAGGGATTGTTTTTTCCCCCGAAAAAAGCAAAcgcta aaaaaagaaatatgatgaAAAGTATACAGTGCACTGACTATCCAATTACt tttttttAGGTGTAAGGTCTAtttttttGACATTGCAAATTGTTTAGTTG gaaacttttttctgaaaattggaaaaaaccaaggaaattttcctcaaaat tgcaaaatgtgtaagaaatcaaatttttcaaaaacttcctGAGACAAagt caggctagctctaaagctctaaaacagcatctagtaATGGGAATCCAAAC TGTAAAGTGCGctcacaaacatcaatttgtcagatgtaacaaaattaata atggCACTGTAAccattgacaatcaaacaaagcattttctttcaaggacc ttgtaaacattcgaacaaCTTCCATCGAGATAATCTGCTGCAGCTAAGTA ACATTTTGCACAGTTTAAGGATCGCGCCAAGTTGTAAAAAAGCCACCCGC GGAGTACACCTCCCTCACAGGTGAAAAtgtttaatctgtcaatcattttc tcaagcaaagagtacgcgaagcgattctagctttacaataTTGCCGCAGA TCATCATCacgacttttgaaaaattgaaattgaaagaatGCTTAGGATAA ACCAAACAgcagaaattgattttttgaatttcttttgactgcaatgatta gttcccgctaaaattagttcccttaaaggtAGATTCAGGGCTTTTACTCA ATGGTCCTTTGCCTTTAACCAAACTTATGATAATTATGCATTAATATgtc tttgttttgatgctgaattttttaattattcaatatgacaTCCTGACTAG CAAAAGATCTATGGTGTTTACTTGCAAACTGTCTAAAGTGActaattttt caactcaaatgaaTAATCTTTTTTCGCGAGAAGTGGAATTTTAGTCTGAG AAGTGGAATTATAGTCTTGGAAGTGGAATCTTATGCCAAACAATGGTAAC ACACTCCCAagggttttttcaaattttaattttttgaaaaaaatcagccC TCAAAATGACTATTATTATATTCAGGGCTGCAGATTGGAAGCTAGAACAA CCAGACTGGACAGTTCGAATGAGGATTGTGGAAATGAATGGTAGATGTAT TTTGAATTTCGAAGATAAAATGTCAGGTtagatttttctttgtatttttc tatttcttttataAGGAGGAAAACCATTTTCGTTAAGGCTATCTCAGTTA AAAACTATGACAAAAAACATTTAAGAAGAGCCTAGATAGTGAAAATTTGG AAGATACACAGAGAGATTTGGAGTTCAGAATCAAAATGTAAAGGCTTAAA TGTATAAGGTTTGTGGCAGTGAAATTTGCTGGATTTAATCAATACCACAG GCCTGGCCATGAAGAAAAGCCTGCGTGTGCCATTATAGCACTTGCAAGCC TTAAATTTGGACTTTCAATACCTGTTTTTGCTTGATTTAGGCGTGCTATT TTAGCACTCGCAAATAATTTTACGTGTGTGCTAGCGTGTGCGCGTGCTAT AGCACGCCATTCAAGGCCAGGCCTGATACCACAATAATACCCTCTAAATT CCCCTACTGCTACAATTGTAAcatgtttcttaaaaacaaagattttgagA TAAAACTCTAGTGCTCAAAGAgtttgacgtcaatcgatacttttattttt cgaaatttcaggTCAGCTGTTTGCTAAGGCACCAATCGATGAATATCCAG GTCCAACAGTTGAAGCAGTATCTGACAGTAGTCGATATTTCGTTATCAAA ATACAAGAAGACGGAGGTATCTTATCAAGGATTTATTAATGTCTGTTTTT GGTGAAGCTATGATAAAATTATAAGCCAGTAttttttttGCCAGTTTAAT TTATTCATACCTTTGTGTGCTGTTTAAAATGTATCATTATTTTGGTTTTC TTGAAAAGCTtcagaaatccaatgattgtattaacctctagccattcaaa tttttaattaaaattcaatgaaatttaaagatctcttatataaaacttac taatcaagctaatcaagtttctgaaactcaaaaaacacaaagacgggggt aactgTCGGACGGGAATTTTGTACCATGATACATATCCATATATCAAAAT CAgaggggatgcatgcagcctaatACTAAACTAGATCAGAAACATGGACA TTTGACATAAACTTTTACATGAATGAAATGAACTTTTTTGTATTACGATT TTGTTTACCACTTGTGGTAACAATTCAATTTATCTGATTTTCTAAAAGCA ATTCGCACATTTTCCtcttaaaattagtttttctttgaattttaggAAGG CATGCATTCATTGGAATGGGTTTCAGTGATCGTGGTGATTCTTTTGATTT CAATGTTTCTCTTCAAGACCATTTcaagtatgtttttttttaactgtttg taacttttttttttaattttcaactgaCCAACTTTTAATACTCTGCTCAT TACGGACCTCTTTTTCAAATAGAACACAGTAATTACTTTTGAACCGGACA TTTTCTTATATCTTTCAAAAAAGTGttatcaattttgataaaaagggcaA ACTCCTGATTATGTCTAATTacattgaattttcttttaaaaacaagatGT GCAATAGTTTTATGCATGTAATAGCTAGTAAGTTCAACCTTATAATTGTC TCGTAGATTTTTAAGTGAATTTTGACACAAACGATTGACTTTGTTTTTCG CAATCAacgaaaatttaaatattttttttcagacgcGAAAAATTGGAGGA TGAAATTTCCAAAGAAGAGAAAAAGCCACAGAAACATGTTGACATGAGTT TCAAAGAAGGACAAACCATCAAAATTAACTTCGGGGTATCTATTATTTGA GAATTAAGGAAATGGTTTGGTTTAGATTTTCCCAACCTCCCAGAATCTCC AGGATTAACAATATCATTGTCCGATAATAATAAAAGGCACAACAAAAGAT CATGGTACCGtttgcattttttatttttttattctttttacgTAAATACT TTGTTCCTTTTCAGAATAAATCAGGACAAGATTCAAGGCCAAAACCTAAA GCACAAGGTATGCTGAAttgattttgacattttattcGGTTACAATgttt ctaattcgaacttctattattcgaactaaaatattggtcccctcagctga aaaagtgatttaaattactctctgtattCGAATCTTTTGTCCCTtaaaca tcgaattagagagagtcaattgaatgtttttattttaactctACTCTGTA TGAAATTGAAAGGTTGAATAAACGAGGAGATAAATTCGACAGTGTTCTGC GCTTCTGCGTGAAATGTATCAGTCAAGGAGACCTTCACTTAATCAGCTGA AATGTTCAAAGCATAAAGTAGCTCATCCAAAGCTAAGAATTTGCTCATTT CATACTCTGGTATTTATCTAGcccagtttttttataatatattttttgaa aaaattctaatgatatttttacattttagcaGGTGGTAATATTGGTTTCC TACCGCCTCCACCCGGAGGAAACACACCTAAACTGGTGCCTCCGCCCGTA GGAGGTGTACCACACGCACGATCAGCGACACAGCCTGCACAACAAGATCC ATTTACGAACGACCCATTCACGCAACAACCAGCAACACAGACTCAACAAC AACCTAAAAGTACATCCGACTGGGGTGATTTCTCATCGTTCGGCCCATCA AAGTAAGtggaattatttttgaaatagatttttcgAGAAAGATGGTATTT TCCCTCATTaaaaaaaGAGAAGTCATTTTTCCTCGCTCAGGGACAAGCAG TGACTTTTCAATTCTTTCACAAGTTTTCACGGCACCATATACACTGGAAA TTCGTGCGTTCTCAATAAAGGAAGAAAATATCACACACACGATAATTAAC GGGCAATGCTTATCtgaattttatttcattatcattttatttttcctacc gTCATATTGTTGAAACTACTCTCAAGCCACCTTATTTGcgttaagggaac taattttcgttgTTTTCGTGGGTTTTCGGCAAAACTGCGAAAGTTAGAAG CCGCAAATTAAATATTTGGCCATTttgcataaaaaaaaattgaaaaattc cttaaaaaaatgaaagaaatgtgtccaaaatAGGGCGCCCCGTGAGAATT TATTCCAGcgaaatgtgatttttttcgatattttttttcaaccgtGAAAA TTAGCGCCCGCAAAAAATAAGTTCTCTCAAGGTAGGTTGAATATATGATT TGATCTTTTGAATTTCAGCACACAAGCATCAACAAATCCATCAACGACGA ATAACAGCGGTGGCGGTGGAAATTGGGTCACTTTTTAA

Coding sequence (CDS) from alignment at sc0000010_pilon:1051388..1060675+

>XLOC_036876 ID=XLOC_036876|Name=XLOC_036876|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1626bp|location=Sequence derived from alignment at sc0000010_pilon:1051388..1060675+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGACTGATTATGAAAGAATACtgtgtgttaaaaatgaagtttttatgTA
CAAGATACCCCCAAGGAATAGTGCAAGAGGATATAGATGACTGATTATGA
AAGAATACtgtgtgttaaaaatgaagtttttatgTACAAGATACCCCCAA
GGAATAGTGCAAGAGGATATAGGGCTGCAGATTGGAAGCTAGAACAACCA
GACTGGACAGTTCGAATGAGGATTGTGGAAATGAATGGTAGATGTATTTT
GAATTTCGAAGATAAAATGTCAGGGCTGCAGATTGGAAGCTAGAACAACC
AGACTGGACAGTTCGAATGAGGATTGTGGAAATGAATGGTAGATGTATTT
TGAATTTCGAAGATAAAATGTCAGgTCAGCTGTTTGCTAAGGCACCAATC
GATGAATATCCAGGTCCAACAGTTGAAGCAGTATCTGACAGTAGTCGATA
TTTCGTTATCAAAATACAAGAAGACGGAGgTCAGCTGTTTGCTAAGGCAC
CAATCGATGAATATCCAGGTCCAACAGTTGAAGCAGTATCTGACAGTAGT
CGATATTTCGTTATCAAAATACAAGAAGACGGAGgAAGGCATGCATTCAT
TGGAATGGGTTTCAGTGATCGTGGTGATTCTTTTGATTTCAATGTTTCTC
TTCAAGACCATTTcaagAAGGCATGCATTCATTGGAATGGGTTTCAGTGA
TCGTGGTGATTCTTTTGATTTCAATGTTTCTCTTCAAGACCATTTcaaac
gcGAAAAATTGGAGGATGAAATTTCCAAAGAAGAGAAAAAGCCACAGAAA
CATGTTGACATGAGTTTCAAAGAAGGACAAACCATCAAAATTAACTTCGG
GacgcGAAAAATTGGAGGATGAAATTTCCAAAGAAGAGAAAAAGCCACAG
AAACATGTTGACATGAGTTTCAAAGAAGGACAAACCATCAAAATTAACTT
CGGGAATAAATCAGGACAAGATTCAAGGCCAAAACCTAAAGCACAAGAAT
AAATCAGGACAAGATTCAAGGCCAAAACCTAAAGCACAAGcaGGTGGTAA
TATTGGTTTCCTACCGCCTCCACCCGGAGGAAACACACCTAAACTGGTGC
CTCCGCCCGTAGGAGGTGTACCACACGCACGATCAGCGACACAGCCTGCA
CAACAAGATCCATTTACGAACGACCCATTCACGCAACAACCAGCAACACA
GACTCAACAACAACCTAAAAGTACATCCGACTGGGGTGATTTCTCATCGT
TCGGCCCATCAAAcaGGTGGTAATATTGGTTTCCTACCGCCTCCACCCGG
AGGAAACACACCTAAACTGGTGCCTCCGCCCGTAGGAGGTGTACCACACG
CACGATCAGCGACACAGCCTGCACAACAAGATCCATTTACGAACGACCCA
TTCACGCAACAACCAGCAACACAGACTCAACAACAACCTAAAAGTACATC
CGACTGGGGTGATTTCTCATCGTTCGGCCCATCAAACACACAAGCATCAA
CAAATCCATCAACGACGAATAACAGCGGTGGCGGTGGAAATTGGGTCACT
TTTTAACACACAAGCATCAACAAATCCATCAACGACGAATAACAGCGGTG
GCGGTGGAAATTGGGTCACTTTTTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_036876XLOC_036876-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010_pilongenomesc0000010_pilon:1051388..1060675 +
Properties
Property NameValue
Aaloc745-813:9220
Aaloc523-741:8432
Aaloc478-519:7965
Aaloc376-477:7684
Aaloc295-372:7248
Aaloc190-291:6614
Aaloc88-186:5977
Aaloc1-84:1